Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

32101543 .. 32103680

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1232600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAAGCACAACAACGTTATCCCGAGCTCTCACTTCAGGAAGCATTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCTGCTAGGAAGACCAGGAGGAGAACTGCTCGCCAGAAGAAGGCTGTGAAAATCTTCCCTCGTCCAACCACTGGTCCCCTCCGTCCCATTGTTCACGGACAGACTCTGAAGTATAACATGAAAGTGAGAGCTGGTAGAGGCTTTACTCTTGAAGAATTGAAGTCTGCTGGAATTCCAAAGAAACTTGCACCTACCATTGGAATTTCTGTTGATCATCGTAGGAAGAATCGTTCTCTGGAGGGTCTTCAAGCTAATGTTCAACGTCTGAAGACATACAAGGCCAAATTAGTGGTCTTCCCAAGACGTGCTAAGCATACCAAGGCTGGTGATTCTTCCGCAGAGGAGCTTGCCAACGCCACCCAGCTCCATGCTCCCTACCTTCCAATTGCACGTGAGAAGCCAACGGTTGAGCTTGTGAAGATTACCGATGAGCTGAAATCATTCAAGGCTTATGACAAACTCCGTGTGGAGAGGATGAACCAACGCCATGTCGGTGCCAGGCTCAAGAAGGCAGCAGAGGCCGAGAAGGAAGAGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

208

Amino Acids

23.85

Weight (kDa)

10.91

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	7 - 185	2.7e-79	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	152
AciI	CCGC	1 cut(s)	417
AclI	AACGTT	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	252, 282
AcuI	CTGAAG	3 cut(s)	22, 209, 368
AcvI	CACGTG	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	121, 152, 278
AgsI	TTSAA	5 cut(s)	233, 241, 329, 341, 526
AjiI	CACGTC	1 cut(s)	386
AjnI	CCWGG	3 cut(s)	68, 95, 578
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	7 cut(s)	30, 212, 332, 427, 445, 493, 514
AluI	AGCT	7 cut(s)	30, 212, 332, 427, 445, 493, 514
Alw21I	GWGCWC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	360, 600
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	2 cut(s)	252, 282
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
Asp700I	GAANNNNTTC	2 cut(s)	134, 521
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	16, 419
AvaI	CYCGRG	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	473
BbsI	GAAGAC	4 cut(s)	98, 317, 356, 367
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	605
BciT130I	CCWGG	3 cut(s)	70, 97, 580
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	594
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	595
Bme1390I	CCNGG	3 cut(s)	70, 97, 580
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	157, 577
BmrFI	CCNGG	3 cut(s)	70, 97, 580
BpiI	GAAGAC	4 cut(s)	98, 317, 356, 367
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpmI	CTGGAG	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 152, 278
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	3 cut(s)	70, 97, 580
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	3 cut(s)	121, 152, 278
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	115, 437
BseXI	GCAGC	1 cut(s)	605
BseYI	CCCAGC	1 cut(s)	441
BshFI	GGCC	2 cut(s)	362, 602
BshNI	GGYRCC	1 cut(s)	575
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	141, 150
BslI	CCNNNNNNNGG	3 cut(s)	121, 152, 278
BsmFI	GGGAC	2 cut(s)	141, 150
BsnI	GGCC	2 cut(s)	362, 602
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	362, 602
BspLI	GGNNCC	2 cut(s)	157, 577
BspMI	ACCTGC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	3 cut(s)	70, 97, 580
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	606
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	112, 429
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	561
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	3 cut(s)	70, 97, 580
BstSCI	CCNGG	3 cut(s)	68, 95, 578
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	4 cut(s)	98, 317, 356, 367
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	362, 602
BtrI	CACGTC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	112, 429
CaiI	CAGNNNCTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	68
CviAII	CATG	3 cut(s)	199, 449, 569
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	3 cut(s)	22, 209, 368
Eco72I	CACGTG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	68, 95, 578
EcoT14I	CCWWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	202, 452, 572
FaiI	YATR	8 cut(s)	60, 195, 200, 355, 396, 450, 534, 570
FaqI	GGGAC	2 cut(s)	141, 150
FatI	CATG	3 cut(s)	198, 448, 568
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	1 cut(s)	594
GsaI	CCCAGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	362, 602
Hin1II	CATG	3 cut(s)	202, 452, 572
HinfI	GANTC	3 cut(s)	184, 307, 410
HphI	GGTGA	2 cut(s)	16, 419
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	189, 348
Hpy188III	TCNNGA	6 cut(s)	25, 40, 64, 230, 317, 586
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	115, 470, 583, 601
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	4 cut(s)	18, 343, 385, 472
HpyCH4V	TGCA	2 cut(s)	269, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	4 cut(s)	18, 343, 385, 472
Hsp92II	CATG	3 cut(s)	202, 452, 572
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	3 cut(s)	424, 450, 457
Lsp1109I	GCAGC	1 cut(s)	605
MabI	ACCWGGT	1 cut(s)	68
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	4 cut(s)	18, 343, 385, 472
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MfeI	CAATTG	1 cut(s)	465
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	5 cut(s)	236, 252, 282, 365, 465
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	93, 150, 170, 212, 313, 415, 546, 592
MroXI	GAANNNNTTC	2 cut(s)	134, 521
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	203, 573
MspR9I	CCNGG	3 cut(s)	70, 97, 580
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	3 cut(s)	70, 97, 580
MwoI	GCNNNNNNNGC	1 cut(s)	599
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	202, 452, 572
NlaIV	GGNNCC	2 cut(s)	157, 577
PdmI	GAANNNNTTC	2 cut(s)	134, 521
PfeI	GAWTC	2 cut(s)	307, 410
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	3 cut(s)	68, 95, 578
PspCI	CACGTG	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	441
PspGI	CCWGG	3 cut(s)	68, 95, 578
PspN4I	GGNNCC	2 cut(s)	157, 577
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	203, 573
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	3 cut(s)	70, 97, 580
SduI	GDGCHC	1 cut(s)	32
SexAI	ACCWGGT	1 cut(s)	68
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	2 cut(s)	203, 573
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	5 cut(s)	236, 252, 282, 365, 465
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	87
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	3 cut(s)	68, 95, 578
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	4 cut(s)	21, 346, 388, 475
TasI	AATT	5 cut(s)	236, 252, 282, 365, 465
TfiI	GAWTC	2 cut(s)	307, 410
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	593
TspDTI	ATGAA	2 cut(s)	215, 572
TspGWI	ACGGA	3 cut(s)	152, 192, 533
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	252, 282
XmnI	GAANNNNTTC	2 cut(s)	134, 521
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.