Rorug01G0441900

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001375
Physical Location & Seq
Reverse (-)
53923739 .. 53925591
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0441900.1

Sequence Viewer

Length: 1638 bp
ATGGCTTATTTCCTAGAGCTCAAACTCTCAAAATTACTGCCACAATGCACATTCAGACAGTTGAAGCAAATACATGCCCTCATTCTCACTACCTCACTCAACCAAGACATCCAAACTTTCTCCAGATTTCTCCGGCGGAGCACGGAGTTTGGAGCAATGGAATATCCCAATCTCATATATTCCCAACTGGGTTCTCATTTCAGTAATAACATCATGATTCAAAATGCTATGATTAGAGGGTATGGTGGAAATGGTCTCTTTGAGCAATGCCTGCACCTGTACGATGAAATGCCTCAGAGAGGACTCAAACCCCATAACTTCACTTACCCATATGTGTTGAGCTCGTGTTCTAAACTGGGTTGGTTCCGAAAAGGCAAACAAGTGCATTGCCGGATTGTAAAGGATGGGTTTGAGTCCAATCTATCAGTTGCTAATGCCCTTTTCCATTTATACGTTAAAATGGTGGATTTGAGTGATGCCCGCAAGGTGTTTGATGATGTGTCTGTGAAAACTATCGAATTACGGAACCGAATGATTTCACTTTATGTGAGTGCTCGCGATGTTCAGAGTGCAAGGAAGCTGTTTGATGTCATGCCTGAAAGGGACATTGTTTCGTGGAATTCGATGATCACCGGCTACGCTGAAGTAGGGGATGCAGGCAATGCGAGAGATTTGTTTGAGCGGATGCCCGAGAAGGATGTTGTATCATGGACAATAATGATCAGAGTGTATGCCGCTGCAGGAGACCTTATGACAGCGACAAAGTTTTTCGAGACAATGCCTTGCAAGAATGTGGTTTCATGGAACTCTATGATTTCAAGTTACTCCCAGCATGGACAACTTGAACAAGCATTGGATCTCTTTGTCCAAATGCAATCGGGTGGTGAAGTTCCGGACAAATACACGTTTGTTTCTGTTCTATCGGCTTGTTCTCAGTTGGGTGCTTTAGAATTTGGAAAGTGGATACACTACTTGATACAAGACTGGTCTCAGTTTGGAGCCATTTTGGGGACTGCCCTTATAGACATGTATGCAAAATGCGGGGACATACATAGAGCTCTCACGCTTTTTATCAAGATGGGAGAGAGGGATGTATTTTGTTGGAATGTTATGATTAGATCTGTAGCTATCCACGGAAGAACAGGAGACGCCATCAAGATATACTCATTGATGCAAAAAAAAGGGTTGGAGCCGAATGACTTCACGTTCACTGCTGCTCTCTTTGCTTGTAGCCATGGAGGCTTAGTAAAGGAAGGTGAAGGAATCTTCTATTCCATGGAGAGGGATTTTGGGGTTGAACCAAAACTCGAGCATTATGGCTGCATAATTGACCTACTGAGCCGAAATGGTCAGTTGGAGGAAGCAGTACGTCTAGTAAAGGAAATGCCGTATAAGCCTGACATAGCAATATGGGGAGCTTTGCTTGGCGGTTGCAGAGATAGAAGTCACCTTAAATTGGCAGAGGAAGTGATAGAGAAAGCTACAGAGTTGGAAGCAAATGAATCAGGAGTTTATGTGCTCTTGTCTAACATGCATGCCTCAGTAGGGCAATGGCCGGAGGCTCAAAGTGCAAGAGAAATGATGGAAGAAAAGAAAATTTGGAAGAACACAGGGCATAGTAATGTTTATGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

545

Amino Acids

61.83

Weight (kDa)

6.58

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 70 - 118 5.7e-09 PPR repeat family
PPR PF01535 204 - 233 2.1e-06 PPR repeat
PPR_2 PF13041 263 - 311 1.2e-13 PPR repeat family
PPR PF01535 266 - 295 1.1e-08 PPR repeat
PPR_2 PF13041 363 - 410 1.2e-10 PPR repeat family
E_motif PF20431 483 - 542 1.8e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 682
AccII CGCG 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 892
AciI CCGC 6 cut(s) 136, 481, 682, 735, 1041, 1428
AclWI GGATC 1 cut(s) 864
AcoI YGGCCR 1 cut(s) 1553
AcsI RAATTY 3 cut(s) 619, 950, 1596
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 1149
AfaI GTAC 2 cut(s) 281, 1368
AfiI CCNNNNNNNGG 5 cut(s) 299, 1008, 1281, 1456, 1545
AflIII ACRYGT 2 cut(s) 903, 1026
AgsI TTSAA 5 cut(s) 64, 221, 819, 845, 1298
AluBI AGCT 7 cut(s) 19, 342, 580, 1058, 1127, 1418, 1481
AluI AGCT 7 cut(s) 19, 342, 580, 1058, 1127, 1418, 1481
Alw21I GWGCWC 6 cut(s) 21, 143, 344, 556, 1060, 1521
Alw26I GTCTC 5 cut(s) 260, 738, 767, 993, 1140
AlwI GGATC 1 cut(s) 864
Ama87I CYCGRG 2 cut(s) 689, 1307
Aor13HI TCCGGA 1 cut(s) 892
AoxI GGCC 1 cut(s) 1553
ApeKI GCWGC 3 cut(s) 737, 1214, 1320
ApoI RAATTY 3 cut(s) 619, 950, 1596
Asp700I GAANNNNTTC 2 cut(s) 535, 1199
AsuHPI GGTGA 4 cut(s) 622, 896, 1268, 1439
AvaI CYCGRG 2 cut(s) 689, 1307
BanII GRGCYC 3 cut(s) 21, 344, 1060
BauI CACGAG 1 cut(s) 343
Bbv12I GWGCWC 6 cut(s) 21, 143, 344, 556, 1060, 1521
BbvI GCAGC 3 cut(s) 724, 1201, 1307
BccI CCATC 4 cut(s) 398, 1072, 1160, 1576
BceAI ACGGC 1 cut(s) 1372
BciVI GTATCC 1 cut(s) 957
BclI TGATCA 2 cut(s) 627, 720
BcoDI GTCTC 5 cut(s) 260, 738, 767, 993, 1140
BfaI CTAG 2 cut(s) 14, 1373
BfmI CTRYAG 3 cut(s) 738, 1122, 1482
BfuI GTATCC 1 cut(s) 957
BglI GCCNNNNNGGC 1 cut(s) 1239
BglII AGATCT 1 cut(s) 1118
BisI GCNGC 4 cut(s) 735, 738, 1215, 1321
BlsI GCNGC 4 cut(s) 736, 739, 1216, 1322
BmeT110I CYCGRG 2 cut(s) 689, 1307
BmiI GGNNCC 4 cut(s) 365, 527, 1000, 1191
BmrI ACTGGG 2 cut(s) 197, 365
BmsI GCATC 4 cut(s) 466, 643, 675, 1161
BmuI ACTGGG 2 cut(s) 197, 365
BpmI CTGGAG 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 1149
BsaI GGTCTC 3 cut(s) 260, 738, 993
BsaJI CCNNGG 3 cut(s) 1132, 1234, 1275
BsaWI WCCGGW 1 cut(s) 892
BsaXI ACNNNNNCTCC 4 cut(s) 1230, 1260, 1500, 1530
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 1008, 1281, 1456, 1545
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 3 cut(s) 192, 360, 989
Bse3DI GCAATG 5 cut(s) 162, 272, 385, 667, 1556
BseAI TCCGGA 1 cut(s) 892
BseDI CCNNGG 3 cut(s) 1132, 1234, 1275
BseGI GGATG 6 cut(s) 108, 409, 658, 690, 703, 1096
BseLI CCNNNNNNNGG 5 cut(s) 299, 1008, 1281, 1456, 1545
BseMI GCAATG 5 cut(s) 162, 272, 385, 667, 1556
BseMII CTCAG 5 cut(s) 308, 947, 1004, 1328, 1554
BseNI ACTGG 3 cut(s) 192, 360, 989
BseXI GCAGC 3 cut(s) 724, 1201, 1307
BseYI CCCAGC 1 cut(s) 828
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 1 cut(s) 1555
BsiHKAI GWGCWC 6 cut(s) 21, 143, 344, 556, 1060, 1521
BsiHKCI CYCGRG 2 cut(s) 689, 1307
BsiSI CCGG 5 cut(s) 133, 391, 633, 893, 1556
BslFI GGGAC 3 cut(s) 617, 1024, 1058
BslI CCNNNNNNNGG 5 cut(s) 299, 1008, 1281, 1456, 1545
BsmAI GTCTC 5 cut(s) 260, 738, 767, 993, 1140
BsmBI CGTCTC 1 cut(s) 1140
BsmFI GGGAC 3 cut(s) 617, 1024, 1058
BsnI GGCC 1 cut(s) 1555
Bso31I GGTCTC 3 cut(s) 260, 738, 993
BsoBI CYCGRG 2 cut(s) 689, 1307
Bsp1286I GDGCHC 6 cut(s) 21, 143, 344, 556, 1060, 1521
Bsp13I TCCGGA 1 cut(s) 892
Bsp143I GATC 4 cut(s) 627, 720, 856, 1118
Bsp19I CCATGG 2 cut(s) 1234, 1275
Bsp68I TCGCGA 1 cut(s) 558
BspACI CCGC 6 cut(s) 136, 481, 682, 735, 1041, 1428
BspANI GGCC 1 cut(s) 1555
BspCNI CTCAG 5 cut(s) 307, 946, 1003, 1329, 1553
BspEI TCCGGA 1 cut(s) 892
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 4 cut(s) 365, 527, 1000, 1191
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 1 cut(s) 864
BspTNI GGTCTC 3 cut(s) 260, 738, 993
BsrBI CCGCTC 1 cut(s) 682
BsrDI GCAATG 5 cut(s) 162, 272, 385, 667, 1556
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 3 cut(s) 192, 360, 989
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 1132, 1234, 1275
BssMI GATC 4 cut(s) 627, 720, 856, 1118
BssNI GRCGYC 1 cut(s) 1149
BssSI CACGAG 1 cut(s) 343
BssT1I CCWWGG 2 cut(s) 1234, 1275
Bst2BI CACGAG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 1149
BstAPI GCANNNNNTGC 2 cut(s) 271, 662
BstC8I GCNNGC 5 cut(s) 272, 481, 556, 658, 1536
BstDEI CTNAG 6 cut(s) 294, 933, 990, 1243, 1337, 1540
BstDSI CCRYGG 3 cut(s) 1132, 1234, 1275
BstENI CCTNNNNNAGG 1 cut(s) 297
BstF5I GGATG 6 cut(s) 108, 409, 658, 690, 703, 1096
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 4 cut(s) 630, 723, 859, 1121
BstMAI GTCTC 5 cut(s) 260, 738, 767, 993, 1140
BstMBI GATC 4 cut(s) 627, 720, 856, 1118
BstMWI GCNNNNNNNGC 6 cut(s) 271, 662, 1223, 1239, 1393, 1568
BstNSI RCATGY 4 cut(s) 77, 1030, 1534, 1538
BstSFI CTRYAG 3 cut(s) 738, 1122, 1482
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 3 cut(s) 724, 1201, 1307
BstX2I RGATCY 2 cut(s) 856, 1118
BstYI RGATCY 2 cut(s) 856, 1118
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 1 cut(s) 1555
BtgI CCRYGG 3 cut(s) 1132, 1234, 1275
BtgZI GCGATG 1 cut(s) 573
BtsCI GGATG 6 cut(s) 108, 409, 658, 690, 703, 1096
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 1 cut(s) 1209
BtuMI TCGCGA 1 cut(s) 558
Cac8I GCNNGC 5 cut(s) 272, 481, 556, 658, 1536
CciI TCATGA 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 632
CseI GACGC 1 cut(s) 1157
Csp6I GTAC 2 cut(s) 280, 1367
CviQI GTAC 2 cut(s) 280, 1367
DdeI CTNAG 6 cut(s) 294, 933, 990, 1243, 1337, 1540
DpnI GATC 4 cut(s) 629, 722, 858, 1120
DpnII GATC 4 cut(s) 627, 720, 856, 1118
EaeI YGGCCR 1 cut(s) 1553
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 3 cut(s) 19, 342, 1058
Eco130I CCWWGG 2 cut(s) 1234, 1275
Eco24I GRGCYC 3 cut(s) 21, 344, 1060
Eco31I GGTCTC 3 cut(s) 260, 738, 993
Eco53kI GAGCTC 3 cut(s) 19, 342, 1058
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 2 cut(s) 689, 1307
EcoICRI GAGCTC 3 cut(s) 19, 342, 1058
EcoNI CCTNNNNNAGG 1 cut(s) 297
EcoRI GAATTC 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 1234, 1275
EcoT22I ATGCAT 1 cut(s) 1536
EcoT38I GRGCYC 3 cut(s) 21, 344, 1060
ErhI CCWWGG 2 cut(s) 1234, 1275
Esp3I CGTCTC 1 cut(s) 1140
FaqI GGGAC 3 cut(s) 617, 1024, 1058
FauI CCCGC 2 cut(s) 488, 1034
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 2 cut(s) 627, 720
Fnu4HI GCNGC 4 cut(s) 735, 738, 1215, 1321
FokI GGATG 6 cut(s) 95, 416, 665, 697, 710, 1103
FriOI GRGCYC 3 cut(s) 21, 344, 1060
Fsp4HI GCNGC 4 cut(s) 735, 738, 1215, 1321
FspBI CTAG 2 cut(s) 14, 1373
GluI GCNGC 4 cut(s) 735, 738, 1215, 1321
GsaI CCCAGC 1 cut(s) 832
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 1 cut(s) 1555
HapII CCGG 5 cut(s) 133, 391, 633, 893, 1556
HgaI GACGC 1 cut(s) 1157
Hin1I GRCGYC 1 cut(s) 1149
HinfI GANTC 5 cut(s) 217, 303, 413, 1263, 1502
HpaII CCGG 5 cut(s) 133, 391, 633, 893, 1556
HphI GGTGA 4 cut(s) 622, 896, 1268, 1439
Hpy166II GTNNAC 1 cut(s) 1209
Hpy188I TCNGA 5 cut(s) 56, 297, 368, 567, 725
Hpy188III TCNNGA 9 cut(s) 123, 214, 557, 772, 893, 1075, 1156, 1506, 1635
Hpy8I GTNNAC 1 cut(s) 1209
HpyAV CCTTC 3 cut(s) 688, 1247, 1253
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 4 cut(s) 453, 905, 1205, 1369
HpyF10VI GCNNNNNNNGC 6 cut(s) 271, 662, 1223, 1239, 1393, 1568
HpyF3I CTNAG 6 cut(s) 294, 933, 990, 1243, 1337, 1540
HpySE526I ACGT 4 cut(s) 453, 905, 1205, 1369
Hsp92I GRCGYC 1 cut(s) 1149
Kpn2I TCCGGA 1 cut(s) 892
Ksp22I TGATCA 2 cut(s) 627, 720
Kzo9I GATC 4 cut(s) 627, 720, 856, 1118
LmnI GCTCC 5 cut(s) 138, 152, 998, 1189, 1415
Lsp1109I GCAGC 3 cut(s) 724, 1201, 1307
LweI GCATC 4 cut(s) 466, 643, 675, 1161
MaeI CTAG 2 cut(s) 14, 1373
MaeII ACGT 4 cut(s) 453, 905, 1205, 1369
MaeIII GTNAC 2 cut(s) 821, 1445
MalI GATC 4 cut(s) 629, 722, 858, 1120
MbiI CCGCTC 1 cut(s) 682
MboI GATC 4 cut(s) 627, 720, 856, 1118
MboII GAAGA 4 cut(s) 1149, 1258, 1598, 1615
MflI RGATCY 2 cut(s) 856, 1118
MhlI GDGCHC 6 cut(s) 21, 143, 344, 556, 1060, 1521
MluCI AATT 7 cut(s) 32, 518, 619, 950, 1326, 1454, 1596
MlyI GAGTC 2 cut(s) 297, 422
MmeI TCCRAC 4 cut(s) 1082, 1167, 1335, 1470
Mph1103I ATGCAT 1 cut(s) 1536
MroI TCCGGA 1 cut(s) 892
MroXI GAANNNNTTC 2 cut(s) 535, 1199
MseI TTAA 2 cut(s) 456, 1452
MslI CAYNNNNRTG 1 cut(s) 1620
MspA1I CMGCKG 1 cut(s) 737
MspI CCGG 5 cut(s) 133, 391, 633, 893, 1556
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 6 cut(s) 271, 662, 1223, 1239, 1393, 1568
NcoI CCATGG 2 cut(s) 1234, 1275
NdeI CATATG 1 cut(s) 331
NdeII GATC 4 cut(s) 627, 720, 856, 1118
NlaIV GGNNCC 4 cut(s) 365, 527, 1000, 1191
NmuCI GTSAC 1 cut(s) 1445
NruI TCGCGA 1 cut(s) 558
NsiI ATGCAT 1 cut(s) 1536
NspI RCATGY 4 cut(s) 77, 1030, 1534, 1538
PaeI GCATGC 1 cut(s) 1538
PaeR7I CTCGAG 1 cut(s) 1307
PagI TCATGA 1 cut(s) 213
PciI ACATGT 1 cut(s) 1026
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PdmI GAANNNNTTC 2 cut(s) 535, 1199
PfeI GAWTC 3 cut(s) 217, 1263, 1502
PkrI GCNGC 4 cut(s) 736, 739, 1216, 1322
PleI GAGTC 2 cut(s) 297, 421
PpsI GAGTC 2 cut(s) 297, 421
PscI ACATGT 1 cut(s) 1026
Psp124BI GAGCTC 3 cut(s) 21, 344, 1060
PspFI CCCAGC 1 cut(s) 828
PspN4I GGNNCC 4 cut(s) 365, 527, 1000, 1191
PspXI VCTCGAGB 1 cut(s) 1307
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 856, 1118
RruI TCGCGA 1 cut(s) 558
RsaI GTAC 2 cut(s) 281, 1368
RsaNI GTAC 2 cut(s) 280, 1367
RseI CAYNNNNRTG 1 cut(s) 1620
SacI GAGCTC 3 cut(s) 21, 344, 1060
SaqAI TTAA 2 cut(s) 456, 1452
SatI GCNGC 4 cut(s) 735, 738, 1215, 1321
Sau3AI GATC 4 cut(s) 627, 720, 856, 1118
SchI GAGTC 2 cut(s) 297, 422
SduI GDGCHC 6 cut(s) 21, 143, 344, 556, 1060, 1521
SfaNI GCATC 4 cut(s) 466, 643, 675, 1161
SfcI CTRYAG 3 cut(s) 738, 1122, 1482
Sfr274I CTCGAG 1 cut(s) 1307
SlaI CTCGAG 1 cut(s) 1307
SmiMI CAYNNNNRTG 1 cut(s) 1620
SmlI CTYRAG 1 cut(s) 1307
SmoI CTYRAG 1 cut(s) 1307
SphI GCATGC 1 cut(s) 1538
Sse9I AATT 7 cut(s) 32, 518, 619, 950, 1326, 1454, 1596
SsiI CCGC 6 cut(s) 136, 481, 682, 735, 1041, 1428
SspMI CTAG 2 cut(s) 14, 1373
SstI GAGCTC 3 cut(s) 21, 344, 1060
StyI CCWWGG 2 cut(s) 1234, 1275
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 4 cut(s) 456, 908, 1208, 1372
TaqI TCGA 4 cut(s) 516, 623, 771, 1308
TasI AATT 7 cut(s) 32, 518, 619, 950, 1326, 1454, 1596
TauI GCSGC 1 cut(s) 737
TfiI GAWTC 3 cut(s) 217, 1263, 1502
Tru1I TTAA 2 cut(s) 456, 1452
Tru9I TTAA 2 cut(s) 456, 1452
TscAI CASTG 1 cut(s) 1216
TseFI GTSAC 1 cut(s) 1445
TseI GCWGC 3 cut(s) 737, 1214, 1320
Tsp45I GTSAC 1 cut(s) 1445
TspDTI ATGAA 3 cut(s) 300, 789, 1515
TspGWI ACGGA 3 cut(s) 158, 538, 1149
TspRI CASTG 1 cut(s) 1216
XagI CCTNNNNNAGG 1 cut(s) 297
XapI RAATTY 3 cut(s) 619, 950, 1596
XceI RCATGY 4 cut(s) 77, 1030, 1534, 1538
XhoI CTCGAG 1 cut(s) 1307
XmnI GAANNNNTTC 2 cut(s) 535, 1199
XspI CTAG 2 cut(s) 14, 1373
Zsp2I ATGCAT 1 cut(s) 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.