Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Reverse (-)

27349430 .. 27350331

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAAAGTGAGAGCTGGTAGAGGCTTTACTCTTGAAGAATTGAAGTCTGCCGGGATTCCAAAGAAACTTGCACCTACAATTGGAATTTCTGTTGATCATCGTAGGAAGAATCGTTCTCTCGAGGGTCTTCAAGCTAATGTTCAGCGTCTGAAGACATACAAGGCCAAATTAGTGGTCTTCCCAAGACGCGCCAAGCATATCAAGGCTGGTGATTCTCCTGTGGAGGAAATTGCCAATGCCACCCAGCTCCAAGGCCCCTACCTTCCAATTGCACGTGAGAAGCCTACAGTTGAGCTTGTGAAGGTTACCGATGAGTTGAAATCATTCAAGGCATATGACAAACTTCGCGTGGAGAGGATGAACACACGCCATATTGGTGCCAGGCTCAAGAAGGCAGCAGAGGCAGAGAAGGAAGAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

10.25

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	1 - 119	1.4e-45	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	2 cut(s)	189, 348
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	5 cut(s)	35, 43, 131, 319, 328
AjnI	CCWGG	1 cut(s)	380
AloI	GAACNNNNNNTCC	2 cut(s)	97, 129
AluBI	AGCT	4 cut(s)	14, 134, 247, 295
AluI	AGCT	4 cut(s)	14, 134, 247, 295
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	162, 253
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	84
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	3 cut(s)	119, 158, 169
BbvI	GCAGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	382
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	52, 382
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	256, 379
BmrFI	CCNGG	2 cut(s)	52, 382
BpiI	GAAGAC	3 cut(s)	119, 158, 169
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	243
Bsh1236I	CGCG	2 cut(s)	189, 348
BshFI	GGCC	2 cut(s)	164, 255
BshNI	GGYRCC	1 cut(s)	377
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	80
BsnI	GGCC	2 cut(s)	164, 255
BsoBI	CYCGRG	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	164, 255
BspFNI	CGCG	2 cut(s)	189, 348
BspLI	GGNNCC	2 cut(s)	256, 379
BspT107I	GGYRCC	1 cut(s)	377
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	275
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	363
BstFNI	CGCG	2 cut(s)	189, 348
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	50, 380
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	189, 348
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	3 cut(s)	119, 158, 169
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	164, 255
BtsCI	GGATG	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	2 cut(s)	134, 195
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaiI	YATR	5 cut(s)	157, 198, 334, 336, 372
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	396
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	164, 255
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	134, 195
HhaI	GCGC	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	55, 109, 212
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	32, 119, 388
HpyAV	CCTTC	4 cut(s)	272, 295, 385, 403
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	2 cut(s)	71, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	274
HspAI	GCGC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	6 cut(s)	64, 192, 231, 257, 367, 394
Lsp1109I	GCAGC	1 cut(s)	407
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	6 cut(s)	47, 118, 119, 163, 169, 425
MfeI	CAATTG	2 cut(s)	78, 267
MluCI	AATT	6 cut(s)	38, 78, 84, 167, 228, 267
MnlI	CCTC	5 cut(s)	14, 115, 217, 348, 394
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	52, 382
MunI	CAATTG	2 cut(s)	78, 267
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	189, 348
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	52
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	256, 379
PaeR7I	CTCGAG	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	55, 109, 212
PkrI	GCNGC	1 cut(s)	397
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	380
PspCI	CACGTG	1 cut(s)	275
PspEI	GGTNACC	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	256, 379
PspPI	GGNCC	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	375
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	52, 382
SetI	ASST	8 cut(s)	16, 76, 136, 249, 264, 277, 297, 306
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	119, 386
SmoI	CTYRAG	2 cut(s)	119, 386
Sse9I	AATT	6 cut(s)	38, 78, 84, 167, 228, 267
StyD4I	CCNGG	2 cut(s)	50, 380
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	1 cut(s)	120
TasI	AATT	6 cut(s)	38, 78, 84, 167, 228, 267
TfiI	GAWTC	3 cut(s)	55, 109, 212
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	17, 374
XapI	RAATTY	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.