Rw2G020870

Belongs to the eukaryotic ribosomal protein eL13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001375
Physical Location & Seq
Forward (+)
28607606 .. 28609076
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020870.1

Sequence Viewer

Length: 624 bp
ATGGTGAAGCACAACAATGTTATTCCCGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCCGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCAAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTTCGTCCAGTTGTTCGCGGACAGACATTGAAGTATAACATGAAGGTCAGGGCTGGTCGCGGTTTCACTTTGGAAGAGTTGAAGGCTGCTGGTATCCCAAGGAAACTTGCACCAACCATTGGAATCTCAGTTGATCATCGTAGGAAGAATCGTTCTCTCGAGGGGTTTCAAGTTAATGTGCTTCGTCTGAAGACATACAAGCAGAAATTAGTTGTCTTCCCAAGGCGTGCTGGCAAGTTTAAGGCCGGTGACTCTGCAGCAGAGGAGCTTGCAAATGCAACCCAGGTCCAAGGTCCTCTGTTGCCCATCCAACGCGAGAAACCAACTGTTGAGCTTGTAAAGGTTACTAAAGATTTGACTGCAGTCAAGGCATATGACAAGCTTCGTGTGGAACGTGTGAATGTACGTCATGTTGGGGCCAGAGCAAAGAAGGCAGCTGAGGCTGAAAAGGAAGAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13e

Protein Analysis

207

Amino Acids

23.62

Weight (kDa)

11.16

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13e PF01294 7 - 185 1.9e-77 Ribosomal protein L13e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 3 cut(s) 177, 219, 474
AciI CCGC 3 cut(s) 84, 177, 219
AcuI CTGAAG 2 cut(s) 22, 368
AfaI GTAC 1 cut(s) 564
AfiI CCNNNNNNNGG 2 cut(s) 152, 278
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 190, 241, 329
AjnI CCWGG 4 cut(s) 68, 95, 114, 441
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 125, 427, 493, 541, 596
AluI AGCT 5 cut(s) 125, 427, 493, 541, 596
Alw21I GWGCWC 1 cut(s) 36
Ama87I CYCGRG 2 cut(s) 26, 317
AoxI GGCC 3 cut(s) 143, 402, 576
ApeKI GCWGC 3 cut(s) 245, 416, 593
AspA2I CCTAGG 1 cut(s) 140
AspS9I GGNCC 4 cut(s) 155, 445, 452, 576
AsuC2I CCSGG 2 cut(s) 27, 28
AsuHPI GGTGA 2 cut(s) 16, 419
AvaI CYCGRG 2 cut(s) 26, 317
AvaII GGWCC 3 cut(s) 155, 445, 452
AvrII CCTAGG 1 cut(s) 140
BbsI GAAGAC 3 cut(s) 98, 356, 367
Bbv12I GWGCWC 1 cut(s) 36
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 232, 428, 605
BccI CCATC 1 cut(s) 473
BciT130I CCWGG 4 cut(s) 70, 97, 116, 443
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 27, 28
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 2 cut(s) 414, 519
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 3 cut(s) 246, 417, 594
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 3 cut(s) 247, 418, 595
Bme1390I CCNGG 6 cut(s) 27, 28, 70, 97, 116, 443
Bme18I GGWCC 3 cut(s) 155, 445, 452
BmeT110I CYCGRG 2 cut(s) 26, 317
BmgT120I GGNCC 4 cut(s) 155, 445, 452, 576
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 6 cut(s) 27, 28, 70, 97, 116, 443
BoxI GACNNNNGTC 1 cut(s) 521
BpiI GAAGAC 3 cut(s) 98, 356, 367
BplI GAGNNNNNCTC 2 cut(s) 94, 126
Bpu10I CCTNAGC 1 cut(s) 597
BpuMI CCSGG 2 cut(s) 27, 28
BsaJI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 278
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 53, 167
BseBI CCWGG 4 cut(s) 70, 97, 116, 443
BseDI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
BseGI GGATG 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 152, 278
BseMII CTCAG 2 cut(s) 300, 588
BseNI ACTGG 2 cut(s) 53, 167
BseRI GAGGAG 2 cut(s) 115, 437
BseXI GCAGC 3 cut(s) 232, 428, 605
Bsh1236I CGCG 3 cut(s) 177, 219, 474
BshFI GGCC 3 cut(s) 145, 404, 578
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 2 cut(s) 26, 317
BsiSI CCGG 2 cut(s) 27, 405
BslI CCNNNNNNNGG 2 cut(s) 152, 278
BsnI GGCC 3 cut(s) 145, 404, 578
BsoBI CYCGRG 2 cut(s) 26, 317
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 3 cut(s) 84, 177, 219
BspANI GGCC 3 cut(s) 145, 404, 578
BspCNI CTCAG 2 cut(s) 299, 589
BspFNI CGCG 3 cut(s) 177, 219, 474
BspLI GGNNCC 1 cut(s) 577
BspMAI CTGCAG 2 cut(s) 418, 523
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 2 cut(s) 53, 167
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 7 cut(s) 26, 27, 140, 257, 380, 441, 448
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 4 cut(s) 140, 257, 380, 448
Bst2UI CCWGG 4 cut(s) 70, 97, 116, 443
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 3 cut(s) 165, 228, 606
BstC8I GCNNGC 4 cut(s) 112, 387, 391, 429
BstDEI CTNAG 2 cut(s) 286, 597
BstF5I GGATG 1 cut(s) 465
BstFNI CGCG 3 cut(s) 177, 219, 474
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
BstNI CCWGG 4 cut(s) 70, 97, 116, 443
BstPAI GACNNNNGTC 1 cut(s) 521
BstSCI CCNGG 6 cut(s) 25, 26, 68, 95, 114, 441
BstSFI CTRYAG 2 cut(s) 414, 519
BstUI CGCG 3 cut(s) 177, 219, 474
BstV1I GCAGC 3 cut(s) 232, 428, 605
BstV2I GAAGAC 3 cut(s) 98, 356, 367
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 3 cut(s) 145, 404, 578
BtsCI GGATG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 4 cut(s) 112, 387, 391, 429
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 4 cut(s) 155, 445, 452, 576
Cfr9I CCCGGG 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 68
Csp6I GTAC 1 cut(s) 563
CviAII CATG 2 cut(s) 199, 569
CviQI GTAC 1 cut(s) 563
DdeI CTNAG 2 cut(s) 286, 597
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
DrdI GACNNNNNNGTC 1 cut(s) 162
DseDI GACNNNNNNGTC 1 cut(s) 162
Eam1104I CTCTTC 3 cut(s) 165, 228, 606
EarI CTCTTC 3 cut(s) 165, 228, 606
Eco130I CCWWGG 4 cut(s) 140, 257, 380, 448
Eco147I AGGCCT 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 155, 445, 452
Eco57I CTGAAG 2 cut(s) 22, 368
Eco88I CYCGRG 2 cut(s) 26, 317
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 4 cut(s) 68, 95, 114, 441
EcoT14I CCWWGG 4 cut(s) 140, 257, 380, 448
ErhI CCWWGG 4 cut(s) 140, 257, 380, 448
FaeI CATG 2 cut(s) 202, 572
FaiI YATR 7 cut(s) 60, 195, 200, 355, 532, 534, 570
FatI CATG 2 cut(s) 198, 568
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 532
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 246, 417, 594
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 3 cut(s) 246, 417, 594
FspBI CTAG 1 cut(s) 141
GluI GCNGC 3 cut(s) 246, 417, 594
HaeIII GGCC 3 cut(s) 145, 404, 578
HapII CCGG 2 cut(s) 27, 405
Hin1II CATG 2 cut(s) 202, 572
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 3 cut(s) 282, 307, 410
HpaII CCGG 2 cut(s) 27, 405
HphI GGTGA 2 cut(s) 16, 419
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 3 cut(s) 40, 64, 317
HpyAV CCTTC 3 cut(s) 196, 235, 583
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4IV ACGT 2 cut(s) 553, 565
HpyCH4V TGCA 5 cut(s) 269, 416, 431, 437, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
HpyF3I CTNAG 2 cut(s) 286, 597
HpySE526I ACGT 2 cut(s) 553, 565
Hsp92II CATG 2 cut(s) 202, 572
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 31, 424
Lsp1109I GCAGC 3 cut(s) 232, 428, 605
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 553, 565
MaeIII GTNAC 2 cut(s) 407, 502
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 7 cut(s) 103, 152, 245, 316, 361, 367, 623
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 365
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 6 cut(s) 93, 168, 313, 415, 465, 592
MseI TTAA 3 cut(s) 75, 333, 399
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 2 cut(s) 27, 405
MspR9I CCNGG 6 cut(s) 27, 28, 70, 97, 116, 443
MvaI CCWGG 4 cut(s) 70, 97, 116, 443
MvnI CGCG 3 cut(s) 177, 219, 474
MwoI GCNNNNNNNGC 4 cut(s) 116, 527, 590, 599
NciI CCSGG 2 cut(s) 27, 28
NdeI CATATG 1 cut(s) 532
NdeII GATC 1 cut(s) 292
NlaIII CATG 2 cut(s) 202, 572
NlaIV GGNNCC 1 cut(s) 577
NmuCI GTSAC 1 cut(s) 407
PaeR7I CTCGAG 1 cut(s) 317
PceI AGGCCT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PfeI GAWTC 2 cut(s) 282, 307
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 3 cut(s) 247, 418, 595
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 4 cut(s) 68, 95, 114, 441
PspGI CCWGG 4 cut(s) 68, 95, 114, 441
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 4 cut(s) 155, 445, 452, 576
PspPPI RGGWCCY 1 cut(s) 452
PstI CTGCAG 2 cut(s) 418, 523
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 564
RsaNI GTAC 1 cut(s) 563
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 3 cut(s) 75, 333, 399
SatI GCNGC 3 cut(s) 246, 417, 594
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 4 cut(s) 155, 445, 452, 576
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 6 cut(s) 27, 28, 70, 97, 116, 443
SduI GDGCHC 1 cut(s) 36
SexAI ACCWGGT 1 cut(s) 68
SfcI CTRYAG 2 cut(s) 414, 519
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 3 cut(s) 155, 445, 452
SlaI CTCGAG 1 cut(s) 317
SmaI CCCGGG 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 365
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 3 cut(s) 84, 177, 219
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 6 cut(s) 25, 26, 68, 95, 114, 441
StyI CCWWGG 4 cut(s) 140, 257, 380, 448
TaaI ACNGT 1 cut(s) 487
TaiI ACGT 2 cut(s) 556, 568
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 365
TfiI GAWTC 2 cut(s) 282, 307
Tru1I TTAA 3 cut(s) 75, 333, 399
Tru9I TTAA 3 cut(s) 75, 333, 399
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 245, 416, 593
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 215
TspMI CCCGGG 1 cut(s) 26
TspRI CASTG 1 cut(s) 53
Van91I CCANNNNNTGG 1 cut(s) 278
VpaK11BI GGWCC 3 cut(s) 155, 445, 452
XhoI CTCGAG 1 cut(s) 317
XmaI CCCGGG 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 140
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.