Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001375

Physical Location & Seq

Genomic Coordinates Forward (+)

774469 .. 776681

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTGAAGCACAATAATGTTATCCCTGGGGAGCACTTCAGGAAGCACTGGCAGAACTATGTCAAGACCTGGTTTAACCAACCAGCAAGGAAGACCAGGAGGAGAAATGCTCGCCAGGCAAAAGCTGTGAAAATCTTTCCTAGGCCTACTGCTGGACCTCTCCGTCCTGTTGTTCGTGGACAGACATTGAAGTATAACATGAAGGTCAGGGCTGGTCGTGGCTTCACTCTGGAAGAGTTGAAGGCCGCTGGGATTCCAAGGAAACTTGCACCAACCATCGGTATCTCGGTTGATCATCGCAGGAAGAACCGTTCTCTTGAGGGGTTTCAAACTAATGTGCTTCGCTTGAAGACATACAAGCAAAAGTTGGTTGTCTTCCCAAGGCGCGCTGGCAAGTTCAAGGCTGGTGATTCTGCAGCAGAGGAGCTAGCAAATGCAACCCAGCTCCAAGGTCCTCTCTTGGCAATTCAACAGGAGAAACCAGTCACTGAGCTTGTGAAGGTCACTGCAGATATGAAGAAAGTCAATGCATATGACAAGCTCCGTATTGAGCGGGTCAATGTCCGTCATGTTGGGGCCAGGGCAAAGAAGGCTGCTGAGGCTGAGAAGGAAGAAAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13e

Protein Analysis

207

Amino Acids

23.63

Weight (kDa)

11.07

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13e	PF01294	7 - 185	1.5e-77	Ribosomal protein L13e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT3G49010 AT5G23900
fragaria_vesca	FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33460 FvH4_7g33500
malus_domestica	MD01G1232600.v1.1 MD03G1289100.v1.1 MD11G1308800.v1.1
prunus_persica	Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.2G323200_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1 Prupe.5G019600_v2.0.a1
pyrus_communis	pycom04g06880 pycom07g27760 pycom11g27020
rosa_chinensis	RchiOBHm_Chr1g0380821 RchiOBHm_Chr1g0383541 RchiOBHm_Chr2g0116901
rosa_laevigata	RLG00000018312 RLG00000026101 RLG00000026270
rosa_multiflora	Rmu_sc0002962.1_g000012 Rmu_sc0005884.1_g000001 Rmu_sc0012471.1_g000015 Rmu_sc0012636.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126900 Rroxscaffold_4G00277290
rosa_rugosa	Rorug01G0441900
rosa_samantha	Rh1AG448700 Rh1AG467400 Rh1BG404300 Rh1BG425000 Rh1CG418400 Rh1CG437700 Rh1DG434700 Rh1DG457800 Rh2AG264900 Rh2BG276400 Rh2DG272300 Rh2DG291100
rosa_wichuraiana	Rw1G039050 Rw1G040500 Rw2G020870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	553
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	246, 553
AcuI	CTGAAG	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	152, 278
AgsI	TTSAA	6 cut(s)	190, 241, 329, 349, 400, 470
AjnI	CCWGG	5 cut(s)	25, 68, 95, 114, 578
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	5 cut(s)	125, 427, 445, 493, 541
AluI	AGCT	5 cut(s)	125, 427, 445, 493, 541
Alw21I	GWGCWC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	143, 243, 576
ApeKI	GCWGC	2 cut(s)	416, 593
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	2 cut(s)	387, 389
AspS9I	GGNCC	3 cut(s)	155, 452, 576
AsuHPI	GGTGA	2 cut(s)	16, 419
AsuNHI	GCTAGC	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	155, 452
AvrII	CCTAGG	1 cut(s)	140
BbsI	GAAGAC	3 cut(s)	98, 356, 367
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	428, 580
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	5 cut(s)	27, 70, 97, 116, 580
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	2 cut(s)	141, 428
BfmI	CTRYAG	2 cut(s)	414, 507
BisI	GCNGC	3 cut(s)	246, 417, 594
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	247, 418, 595
Bme1390I	CCNGG	5 cut(s)	27, 70, 97, 116, 580
Bme18I	GGWCC	2 cut(s)	155, 452
BmgT120I	GGNCC	3 cut(s)	155, 452, 576
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	5 cut(s)	27, 70, 97, 116, 580
BmtI	GCTAGC	1 cut(s)	431
BpiI	GAAGAC	3 cut(s)	98, 356, 367
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
Bpu10I	CCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	7 cut(s)	25, 26, 140, 257, 380, 448, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 278
Bse1I	ACTGG	2 cut(s)	53, 482
BseBI	CCWGG	5 cut(s)	27, 70, 97, 116, 580
BseDI	CCNNGG	7 cut(s)	25, 26, 140, 257, 380, 448, 579
BseLI	CCNNNNNNNGG	2 cut(s)	152, 278
BseMII	CTCAG	3 cut(s)	480, 588, 594
BseNI	ACTGG	2 cut(s)	53, 482
BsePI	GCGCGC	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	115, 437
BseXI	GCAGC	2 cut(s)	428, 580
BseYI	CCCAGC	2 cut(s)	248, 441
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	145, 245, 578
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	152, 278
BsnI	GGCC	3 cut(s)	145, 245, 578
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	246, 553
BspANI	GGCC	3 cut(s)	145, 245, 578
BspCNI	CTCAG	3 cut(s)	481, 589, 595
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	2 cut(s)	418, 511
BspOI	GCTAGC	1 cut(s)	431
BsrBI	CCGCTC	1 cut(s)	553
BsrI	ACTGG	2 cut(s)	53, 482
BssECI	CCNNGG	7 cut(s)	25, 26, 140, 257, 380, 448, 579
BssHII	GCGCGC	1 cut(s)	385
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	4 cut(s)	140, 257, 380, 448
Bst2UI	CCWGG	5 cut(s)	27, 70, 97, 116, 580
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	4 cut(s)	112, 387, 391, 429
BstDEI	CTNAG	3 cut(s)	489, 597, 603
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	387, 389
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 590, 599
BstNI	CCWGG	5 cut(s)	27, 70, 97, 116, 580
BstSCI	CCNGG	5 cut(s)	25, 68, 95, 114, 578
BstSFI	CTRYAG	2 cut(s)	414, 507
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	428, 580
BstV2I	GAAGAC	3 cut(s)	98, 356, 367
BsuRI	GGCC	3 cut(s)	145, 245, 578
BtgZI	GCGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	3 cut(s)	46, 486, 504
Cac8I	GCNNGC	4 cut(s)	112, 387, 391, 429
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	2 cut(s)	387, 389
Cfr13I	GGNCC	3 cut(s)	155, 452, 576
CsiI	ACCWGGT	1 cut(s)	68
CviAII	CATG	2 cut(s)	199, 569
DdeI	CTNAG	3 cut(s)	489, 597, 603
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	4 cut(s)	140, 257, 380, 448
Eco147I	AGGCCT	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	155, 452
Eco57I	CTGAAG	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	5 cut(s)	25, 68, 95, 114, 578
EcoT14I	CCWWGG	4 cut(s)	140, 257, 380, 448
EcoT22I	ATGCAT	1 cut(s)	532
ErhI	CCWWGG	4 cut(s)	140, 257, 380, 448
FaeI	CATG	2 cut(s)	202, 572
FaiI	YATR	8 cut(s)	60, 195, 200, 355, 515, 532, 534, 570
FatI	CATG	2 cut(s)	198, 568
FauI	CCCGC	1 cut(s)	546
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	246, 417, 594
Fsp4HI	GCNGC	3 cut(s)	246, 417, 594
FspBI	CTAG	2 cut(s)	141, 428
GlaI	GCGC	2 cut(s)	386, 388
GluI	GCNGC	3 cut(s)	246, 417, 594
GsaI	CCCAGC	2 cut(s)	252, 445
HaeIII	GGCC	3 cut(s)	145, 245, 578
HhaI	GCGC	2 cut(s)	387, 389
Hin1II	CATG	2 cut(s)	202, 572
Hin6I	GCGC	2 cut(s)	385, 387
HinP1I	GCGC	2 cut(s)	385, 387
HinfI	GANTC	2 cut(s)	253, 410
HphI	GGTGA	2 cut(s)	16, 419
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188III	TCNNGA	4 cut(s)	40, 64, 230, 317
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	5 cut(s)	196, 235, 493, 583, 601
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	5 cut(s)	269, 416, 437, 509, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 590, 599
HpyF3I	CTNAG	3 cut(s)	489, 597, 603
Hsp92II	CATG	2 cut(s)	202, 572
HspAI	GCGC	2 cut(s)	385, 387
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	4 cut(s)	31, 424, 450, 546
Lsp1109I	GCAGC	2 cut(s)	428, 580
MabI	ACCWGGT	1 cut(s)	68
MaeI	CTAG	2 cut(s)	141, 428
MaeIII	GTNAC	2 cut(s)	484, 502
MalI	GATC	1 cut(s)	294
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	1 cut(s)	292
MboII	GAAGA	7 cut(s)	103, 245, 316, 361, 367, 529, 623
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	465
MnlI	CCTC	6 cut(s)	93, 168, 313, 415, 465, 592
Mph1103I	ATGCAT	1 cut(s)	532
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	5 cut(s)	27, 70, 97, 116, 580
MvaI	CCWGG	5 cut(s)	27, 70, 97, 116, 580
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	116, 590, 599
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	1 cut(s)	292
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	202, 572
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	484, 502
NsiI	ATGCAT	1 cut(s)	532
PasI	CCCWGGG	1 cut(s)	26
PauI	GCGCGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	253, 410
PkrI	GCNGC	3 cut(s)	247, 418, 595
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	5 cut(s)	25, 68, 95, 114, 578
PspFI	CCCAGC	2 cut(s)	248, 441
PspGI	CCWGG	5 cut(s)	25, 68, 95, 114, 578
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	3 cut(s)	155, 452, 576
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	2 cut(s)	418, 511
PstNI	CAGNNNCTG	1 cut(s)	488
PteI	GCGCGC	1 cut(s)	385
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	246, 417, 594
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	3 cut(s)	155, 452, 576
ScrFI	CCNGG	5 cut(s)	27, 70, 97, 116, 580
SduI	GDGCHC	1 cut(s)	36
SexAI	ACCWGGT	1 cut(s)	68
SfcI	CTRYAG	2 cut(s)	414, 507
SinI	GGWCC	2 cut(s)	155, 452
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	465
SseBI	AGGCCT	1 cut(s)	145
SsiI	CCGC	2 cut(s)	246, 553
SspMI	CTAG	2 cut(s)	141, 428
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	5 cut(s)	25, 68, 95, 114, 578
StyI	CCWWGG	4 cut(s)	140, 257, 380, 448
TaaI	ACNGT	1 cut(s)	311
TasI	AATT	1 cut(s)	465
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	253, 410
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	3 cut(s)	53, 493, 511
TseFI	GTSAC	2 cut(s)	484, 502
TseI	GCWGC	2 cut(s)	416, 593
Tsp45I	GTSAC	2 cut(s)	484, 502
TspDTI	ATGAA	2 cut(s)	215, 530
TspGWI	ACGGA	3 cut(s)	152, 533, 554
TspRI	CASTG	3 cut(s)	53, 493, 511
VpaK11BI	GGWCC	2 cut(s)	155, 452
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	141, 428
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.