Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

20430059 .. 20431597

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCTTCATCCAACGCCTGCGCCTCTCCGTCACCGTTCCCCGCCGTCACGAAGCTTCATGTAGACTCCGTCACGTTTGTACCGTCCGTCAAGTCACCGGCCTCCTCCAATCCATTATTCCTCGGCGGCGCCGGTGTCCGAGGCCTTGATATCCAAGGTAAATTCGTGATCTTCACCGTCATTGGAGTATACCTAGAGGGTAACGCCGTTCCTTCTCTATCTGTCAAGTGGAAGGGAAAAACTACGGAGGAGCTAACAGAATCTATCCCGTTCTTCCGTGAAATAGTCACCGGTGCGTTTGAGAAGTTTATCAAGGTGACAATGAAACTGCCGTTAACGGGACAACAATATTCGGAGAAAGTGACGGAGAATTGTGTGGCTATATGGAAACAATTAGGGCTTTATACGGACTGTGAAGCTAAAGCTGTGGAGAAGTTCTTGGAGATCTTCAAGGAAGAAACATTCCCTCCCGGTTCATCGATCCTCTTCGCTCTCTCCCCTACCGGCTCTCTTACGGTTGCGTTTTCGAAAGATGATAGTATCCCTGAAACCGGGATCGCTGTGATCGAGAACAAATTGTTGGCGGAGGCGGTTCTGGAATCTATCATCGGGAAGAACGGTGTGTCACCTGGCACTAGGTTAAGTGTTGCAGAAAGATTATCTCAGCTAATGATGAAGAACAAGGACGAAAAGGAAGTTAGTGATCACTCTGTTGAGGAAAAACTAGCCAAAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0010033 GO:0010224 GO:0012505 GO:0016020 GO:0016853 GO:0016872 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042221 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

246

Amino Acids

26.6

Weight (kDa)

5.43

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	21 - 223	2e-105	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	63, 189
AciI	CCGC	4 cut(s)	42, 126, 584, 590
AclWI	GGATC	2 cut(s)	475, 563
AcsI	RAATTY	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	338, 551
AgeI	ACCGGT	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 563, 595
AluBI	AGCT	5 cut(s)	55, 253, 419, 425, 667
AluI	AGCT	5 cut(s)	55, 253, 419, 425, 667
AlwI	GGATC	2 cut(s)	475, 563
AoxI	GGCC	2 cut(s)	99, 142
ApoI	RAATTY	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	23, 131
AsuC2I	CCSGG	2 cut(s)	471, 553
AsuHPI	GGTGA	6 cut(s)	24, 87, 166, 280, 328, 618
AsuII	TTCGAA	1 cut(s)	527
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BanI	GGYRCC	1 cut(s)	128
BceAI	ACGGC	3 cut(s)	29, 191, 316
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	1 cut(s)	703
BcnI	CCSGG	2 cut(s)	471, 553
BfaI	CTAG	3 cut(s)	194, 636, 725
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	444
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	471, 553, 630
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	3 cut(s)	471, 553, 630
Bpu14I	TTCGAA	1 cut(s)	527
BpuMI	CCSGG	2 cut(s)	471, 553
Bsa29I	ATCGAT	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	121, 139, 154
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 551
Bse118I	RCCGGY	4 cut(s)	97, 131, 290, 503
BseBI	CCWGG	1 cut(s)	630
BseCI	ATCGAT	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	121, 139, 154
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	338, 551
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	94, 263
BshFI	GGCC	2 cut(s)	101, 144
BshNI	GGYRCC	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	479
BsiSI	CCGG	6 cut(s)	98, 132, 291, 471, 504, 552
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	338, 551
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	101, 144
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
BspACI	CCGC	4 cut(s)	42, 126, 584, 590
BspANI	GGCC	2 cut(s)	101, 144
BspCNI	CTCAG	1 cut(s)	676
BspDI	ATCGAT	1 cut(s)	479
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	475, 563
BspT104I	TTCGAA	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	128
BsrFI	RCCGGY	4 cut(s)	97, 131, 290, 503
BssAI	RCCGGY	4 cut(s)	97, 131, 290, 503
BssECI	CCNNGG	3 cut(s)	121, 139, 154
BssMI	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
BssNAI	GTATAC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	154
Bst1107I	GTATAC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	6 cut(s)	36, 84, 178, 413, 517, 620
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	23, 131
BstKTI	GATC	6 cut(s)	171, 447, 483, 558, 567, 706
BstMBI	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	3 cut(s)	469, 551, 628
BstX2I	RGATCY	1 cut(s)	444
BstYI	RGATCY	1 cut(s)	444
BstZ17I	GTATAC	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	101, 144
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	2 cut(s)	23, 131
Cfr10I	RCCGGY	4 cut(s)	97, 131, 290, 503
ClaI	ATCGAT	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	290
CviAII	CATG	1 cut(s)	59
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	663
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	6 cut(s)	170, 446, 482, 557, 566, 705
DpnII	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
EciI	GGCGGA	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	154
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	62
FaiI	YATR	5 cut(s)	60, 190, 383, 385, 405
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	63, 189
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	3 cut(s)	194, 636, 725
GlaI	GCGC	2 cut(s)	22, 130
GluI	GCNGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	101, 144
HapII	CCGG	6 cut(s)	98, 132, 291, 471, 504, 552
HhaI	GCGC	2 cut(s)	23, 131
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	2 cut(s)	21, 129
HinP1I	GCGC	2 cut(s)	21, 129
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	3 cut(s)	65, 260, 599
HpaI	GTTAAC	1 cut(s)	336
HpaII	CCGG	6 cut(s)	98, 132, 291, 471, 504, 552
HphI	GGTGA	6 cut(s)	24, 87, 166, 280, 328, 618
Hpy166II	GTNNAC	3 cut(s)	64, 190, 336
Hpy188I	TCNGA	2 cut(s)	140, 355
Hpy188III	TCNNGA	5 cut(s)	49, 166, 568, 596, 610
Hpy8I	GTNNAC	3 cut(s)	64, 190, 336
HpyAV	CCTTC	2 cut(s)	222, 226
HpyCH4III	ACNGT	6 cut(s)	36, 84, 178, 413, 517, 620
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	650
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	2 cut(s)	21, 129
KasI	GGCGCC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	703
KspAI	GTTAAC	1 cut(s)	336
Kzo9I	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
LmnI	GCTCC	1 cut(s)	250
MaeI	CTAG	3 cut(s)	194, 636, 725
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	9 cut(s)	30, 46, 70, 93, 200, 286, 316, 361, 624
MalI	GATC	6 cut(s)	170, 446, 482, 557, 566, 705
MboI	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
MboII	GAAGA	7 cut(s)	163, 265, 439, 467, 478, 625, 688
MflI	RGATCY	1 cut(s)	444
MluCI	AATT	4 cut(s)	161, 370, 392, 575
Mly113I	GGCGCC	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	1 cut(s)	36
MseI	TTAA	2 cut(s)	335, 641
MspI	CCGG	6 cut(s)	98, 132, 291, 471, 504, 552
MspR9I	CCNGG	3 cut(s)	471, 553, 630
MvaI	CCWGG	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	129
NciI	CCSGG	2 cut(s)	471, 553
NdeII	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	8 cut(s)	30, 46, 70, 93, 286, 316, 361, 624
NspV	TTCGAA	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 564
PfeI	GAWTC	2 cut(s)	260, 599
PflFI	GACNNNGTC	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	290
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	59
PluTI	GGCGCC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	444
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	335, 641
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	6 cut(s)	168, 444, 480, 555, 564, 703
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	3 cut(s)	471, 553, 630
SfoI	GGCGCC	1 cut(s)	130
SfuI	TTCGAA	1 cut(s)	527
SgrAI	CRCCGGYG	2 cut(s)	131, 290
Sse9I	AATT	4 cut(s)	161, 370, 392, 575
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	4 cut(s)	42, 126, 584, 590
SspDI	GGCGCC	1 cut(s)	128
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	194, 636, 725
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	469, 551, 628
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	6 cut(s)	36, 84, 178, 413, 517, 620
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	479, 527, 567
TasI	AATT	4 cut(s)	161, 370, 392, 575
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	2 cut(s)	260, 599
Tru1I	TTAA	2 cut(s)	335, 641
Tru9I	TTAA	2 cut(s)	335, 641
TseFI	GTSAC	8 cut(s)	30, 46, 70, 93, 286, 316, 361, 624
Tsp45I	GTSAC	8 cut(s)	30, 46, 70, 93, 286, 316, 361, 624
TspDTI	ATGAA	4 cut(s)	47, 338, 465, 689
TspGWI	ACGGA	7 cut(s)	18, 58, 76, 260, 266, 380, 422
Tth111I	GACNNNGTC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	161
XmiI	GTMKAC	2 cut(s)	63, 189
XspI	CTAG	3 cut(s)	194, 636, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.