Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Forward (+)

42476475 .. 42477144

Gene Structure 670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAGAAGCCAAAGCCATTGAAAAGTTTATGGAGGTCTTCAAAGATCAGACCTTCCCACCTGGTGCTTCTATTCTCCACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTCCATACCAGCAGTTGGAAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAATCATTGGAAAGCAAGGTGTTTCTCCTGAAGCAAGGAAATGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAGTGATGATTGCGTGGCCGGAAATGGGGAAGTAAAGGAAGCAGAAGTTAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

107

Amino Acids

11.43

Weight (kDa)

9.0

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	11 - 86	2.8e-24	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	64
AfiI	CCNNNNNNNGG	2 cut(s)	140, 291
AgsI	TTSAA	4 cut(s)	22, 42, 158, 262
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	78, 163
AvaI	CYCGRG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	30
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 291
BseBI	CCWGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	140, 291
BshFI	GGCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	140, 291
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	45, 95
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	103
BssMI	GATC	2 cut(s)	45, 95
Bst2UI	CCWGG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	48, 98
BstMBI	GATC	2 cut(s)	45, 95
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	284
CsiI	ACCWGGT	1 cut(s)	60
CviAII	CATG	1 cut(s)	321
CviJI	RGCY	7 cut(s)	10, 16, 111, 166, 239, 247, 284
CviKI_1	RGCY	7 cut(s)	10, 16, 111, 166, 239, 247, 284
DpnI	GATC	2 cut(s)	47, 97
DpnII	GATC	2 cut(s)	45, 95
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	324
FaiI	YATR	3 cut(s)	31, 131, 322
FatI	CATG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	1 cut(s)	324
HinfI	GANTC	2 cut(s)	176, 188
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	78, 163
Hpy188I	TCNGA	3 cut(s)	50, 175, 253
Hpy188III	TCNNGA	2 cut(s)	185, 218
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	45, 95
LpnPI	CCDG	5 cut(s)	47, 74, 147, 231, 298
MabI	ACCWGGT	1 cut(s)	60
MalI	GATC	2 cut(s)	47, 97
MboI	GATC	2 cut(s)	45, 95
MboII	GAAGA	1 cut(s)	30
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	185, 197
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	45, 95
NlaIII	CATG	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	140
PleI	GAGTC	2 cut(s)	184, 196
PpsI	GAGTC	2 cut(s)	184, 196
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	315
Sau3AI	GATC	2 cut(s)	45, 95
SchI	GAGTC	2 cut(s)	185, 197
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	5 cut(s)	38, 55, 63, 168, 211
SexAI	ACCWGGT	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.