Rw7G029060

Belongs to the chalcone isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004474
Physical Location & Seq
Forward (+)
40074830 .. 40076186
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029060.1

Sequence Viewer

Length: 651 bp
ATGGCTCAATCAGTTACCGGAATTCAGGTCGAAGCGACCACGTTTCCTCCCGCAGTCAAGCCTCCGGGCTCCGCCAGCACTCTGTTCCTCGCCGGTGCAGGGGCGAGGGGGCTGGAGATACAGGGGAATTTCGTCAAGTTCACGGCGATTGGAGTTTACTTGGAGGATAAGGCCGGGCCGACGGCCGAGGAGTTGACGGAGTCCGTTGAGTTCTTCAGGGAGATCGTTACAGGTCCGTTTGAGAAATTCACACAGGTGACGATGATACTACGAAGGTTTCAGAAAATTGTGTTGCCATTTGGAAAAAATTTGGAATTTATACTGGATGCAGAAGCCAAAGCCATTGAAAAGTTTATGGAGGTCTTCAAAGATCAGACCTTCCCACCTGGTGCTTCTATTCTCTTCACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTCCATACCAGCAGTTGGAAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAGTCATTGGAAAGCAAGGTGTTTCTCCTGAAGCAAGGAAATGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAGTGATGATTGTGTGGCCGGAAATGGGGAAGTAAAGGAAGCAGAAGTTAAGGCATGA

Protein Analysis

216

Amino Acids

23.11

Weight (kDa)

4.95

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chalcone PF02431 10 - 195 1.8e-71 Chalcone-flavanone isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 467
AciI CCGC 3 cut(s) 51, 72, 476
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 2 cut(s) 183, 609
AcsI RAATTY 5 cut(s) 21, 127, 245, 307, 314
AcuI CTGAAG 2 cut(s) 199, 567
AdeI CACNNNGTG 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 99, 467, 618
AgsI TTSAA 4 cut(s) 347, 367, 485, 589
AjnI CCWGG 1 cut(s) 385
AleI CACNNNNGTG 1 cut(s) 254
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 4 cut(s) 171, 176, 183, 609
ApoI RAATTY 5 cut(s) 21, 127, 245, 307, 314
AspS9I GGNCC 2 cut(s) 176, 233
AsuC2I CCSGG 2 cut(s) 66, 175
AsuHPI GGTGA 3 cut(s) 268, 405, 490
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 355
BccI CCATC 1 cut(s) 443
BceAI ACGGC 2 cut(s) 159, 198
BciT130I CCWGG 1 cut(s) 387
BcnI CCSGG 2 cut(s) 66, 175
Bme1390I CCNGG 3 cut(s) 66, 175, 387
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 176, 233
BmiI GGNNCC 2 cut(s) 70, 454
BmrFI CCNGG 3 cut(s) 66, 175, 387
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 134
BpuMI CCSGG 2 cut(s) 66, 175
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 467, 618
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 99, 467, 618
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 203
BseX3I CGGCCG 1 cut(s) 183
BsgI GTGCAG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 173, 178, 185, 611
BsiEI CGRYCG 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 5 cut(s) 18, 65, 93, 174, 612
BslI CCNNNNNNNGG 3 cut(s) 99, 467, 618
BsnI GGCC 4 cut(s) 173, 178, 185, 611
BsoBI CYCGRG 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 222, 370, 422
BspACI CCGC 3 cut(s) 51, 72, 476
BspANI GGCC 4 cut(s) 173, 178, 185, 611
BspLI GGNNCC 2 cut(s) 70, 454
BspPI GGATC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 3 cut(s) 222, 370, 422
Bst2UI CCWGG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 225, 373, 425
BstMBI GATC 3 cut(s) 222, 370, 422
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 387
BstSCI CCNGG 3 cut(s) 64, 173, 385
BstV2I GAAGAC 1 cut(s) 355
BstZI CGGCCG 1 cut(s) 183
BsuRI GGCC 4 cut(s) 173, 178, 185, 611
BtsCI GGATG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 176, 233
CsiI ACCWGGT 1 cut(s) 385
CviAII CATG 1 cut(s) 648
DpnI GATC 3 cut(s) 224, 372, 424
DpnII GATC 3 cut(s) 222, 370, 422
DraIII CACNNNGTG 1 cut(s) 389
EaeI YGGCCR 2 cut(s) 183, 609
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EciI GGCGGA 1 cut(s) 61
EclXI CGGCCG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 233
Eco52I CGGCCG 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 199, 567
Eco88I CYCGRG 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 651
FaiI YATR 4 cut(s) 320, 356, 458, 649
FatI CATG 1 cut(s) 647
FauI CCCGC 1 cut(s) 58
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 4 cut(s) 173, 178, 185, 611
HapII CCGG 5 cut(s) 18, 65, 93, 174, 612
Hin1II CATG 1 cut(s) 651
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 3 cut(s) 200, 503, 515
HpaII CCGG 5 cut(s) 18, 65, 93, 174, 612
HphI GGTGA 3 cut(s) 268, 405, 490
Hpy166II GTNNAC 3 cut(s) 141, 157, 195
Hpy188I TCNGA 4 cut(s) 282, 375, 502, 580
Hpy188III TCNNGA 2 cut(s) 512, 545
Hpy8I GTNNAC 3 cut(s) 141, 157, 195
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 267, 388
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 98, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 651
Kzo9I GATC 3 cut(s) 222, 370, 422
LmnI GCTCC 1 cut(s) 74
LweI GCATC 1 cut(s) 316
MabI ACCWGGT 1 cut(s) 385
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 3 cut(s) 13, 226, 256
MalI GATC 3 cut(s) 224, 372, 424
MboI GATC 3 cut(s) 222, 370, 422
MboII GAAGA 3 cut(s) 205, 355, 394
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 7 cut(s) 21, 127, 245, 285, 307, 314, 581
MlyI GAGTC 3 cut(s) 209, 512, 524
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 7 cut(s) 57, 72, 98, 99, 157, 181, 352
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 5 cut(s) 18, 65, 93, 174, 612
MspR9I CCNGG 3 cut(s) 66, 175, 387
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 75
NciI CCSGG 2 cut(s) 66, 175
NdeII GATC 3 cut(s) 222, 370, 422
NlaIII CATG 1 cut(s) 651
NlaIV GGNNCC 2 cut(s) 70, 454
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 256
OliI CACNNNNGTG 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 512
PflFI GACNNNGTC 1 cut(s) 199
PflMI CCANNNNNTGG 1 cut(s) 467
PleI GAGTC 3 cut(s) 208, 511, 523
PpsI GAGTC 3 cut(s) 208, 511, 523
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 2 cut(s) 70, 454
PspPI GGNCC 2 cut(s) 176, 233
PsyI GACNNNGTC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 642
Sau3AI GATC 3 cut(s) 222, 370, 422
Sau96I GGNCC 2 cut(s) 176, 233
SchI GAGTC 3 cut(s) 209, 512, 524
ScrFI CCNGG 3 cut(s) 66, 175, 387
SduI GDGCHC 1 cut(s) 71
SexAI ACCWGGT 1 cut(s) 385
SfaNI GCATC 1 cut(s) 316
Sfr274I CTCGAG 1 cut(s) 512
SgrAI CRCCGGYG 1 cut(s) 92
SinI GGWCC 1 cut(s) 233
SlaI CTCGAG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 7 cut(s) 21, 127, 245, 285, 307, 314, 581
SsiI CCGC 3 cut(s) 51, 72, 476
StyD4I CCNGG 3 cut(s) 64, 173, 385
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 30, 513
TasI AATT 7 cut(s) 21, 127, 245, 285, 307, 314, 581
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 3 cut(s) 193, 212, 225
Tth111I GACNNNGTC 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 467
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 5 cut(s) 21, 127, 245, 307, 314
XhoI CTCGAG 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.