Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

42593022 .. 42595319

Gene Structure 2298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG290200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTGTTTGTTTTTGTGGGATGGATATAAAGTTGGCTATCATTTTGCAGGTCCATTTGAGAAATTCACACAGGTGACGATGATACTACCATTGACTGGCCAGCAATACTCGGAGAAGGTTTCAGAGAATTGTGTTGCCATTTGGAAAAAATTTGGAATTTATACTGATGCAGAAGCCAAAGCCATTGAAAAGTTTATGGAGGTCTTCAAGGATCAGACCTTCCCACCTGGTGCTTCTATTCTCTTTACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTCCATACCAGCAGTTGGAAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAATCATTGGAAAGCAAGGTGTTTCTCCTGAAGCAAGGAAATGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAGTGATGATTGCGTGGCCGGAAATGGGGAAGTAAAGGAAGCAGAAGTTAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

163

Amino Acids

17.78

Weight (kDa)

5.12

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	16 - 142	5.6e-63	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AccB7I	CCANNNNNTGG	2 cut(s)	95, 308
AciI	CCGC	1 cut(s)	317
AclWI	GGATC	2 cut(s)	219, 271
AcoI	YGGCCR	2 cut(s)	97, 450
AcsI	RAATTY	3 cut(s)	62, 149, 156
AcuI	CTGAAG	1 cut(s)	408
AdeI	CACNNNGTG	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	95, 308, 459
AgsI	TTSAA	4 cut(s)	188, 208, 326, 430
AjnI	CCWGG	1 cut(s)	226
AleI	CACNNNNGTG	1 cut(s)	71
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	2 cut(s)	219, 271
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	97, 450
ApoI	RAATTY	3 cut(s)	62, 149, 156
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	85, 246, 331
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	196
BccI	CCATC	2 cut(s)	14, 284
BciT130I	CCWGG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 308, 459
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	3 cut(s)	95, 308, 459
BseNI	ACTGG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	99, 452
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	3 cut(s)	95, 308, 459
BsnI	GGCC	2 cut(s)	99, 452
BsoBI	CYCGRG	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	211, 263
BspACI	CCGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	99, 452
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	219, 271
BsrI	ACTGG	1 cut(s)	100
BssMI	GATC	2 cut(s)	211, 263
Bst2UI	CCWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	214, 266
BstMBI	GATC	2 cut(s)	211, 263
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	99, 452
BtsCI	GGATG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	226
CviAII	CATG	1 cut(s)	489
CviJI	RGCY	9 cut(s)	36, 99, 176, 182, 279, 334, 407, 415, 452
CviKI_1	RGCY	9 cut(s)	36, 99, 176, 182, 279, 334, 407, 415, 452
DpnI	GATC	2 cut(s)	213, 265
DpnII	GATC	2 cut(s)	211, 263
DraIII	CACNNNGTG	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	97, 450
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	492
FaiI	YATR	5 cut(s)	27, 162, 197, 299, 490
FatI	CATG	1 cut(s)	488
FokI	GGATG	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	99, 452
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	1 cut(s)	492
HinfI	GANTC	2 cut(s)	344, 356
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	3 cut(s)	85, 246, 331
Hpy188I	TCNGA	5 cut(s)	112, 124, 216, 343, 421
Hpy188III	TCNNGA	2 cut(s)	353, 386
HpyAV	CCTTC	2 cut(s)	109, 229
HpyCH4V	TGCA	2 cut(s)	47, 170
Hsp92II	CATG	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	211, 263
LpnPI	CCDG	9 cut(s)	33, 56, 81, 113, 213, 240, 315, 399, 466
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	213, 265
MboI	GATC	2 cut(s)	211, 263
MboII	GAAGA	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	5 cut(s)	62, 127, 149, 156, 422
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	2 cut(s)	353, 365
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	1 cut(s)	193
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	211, 263
NlaIII	CATG	1 cut(s)	492
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	71
PaeR7I	CTCGAG	1 cut(s)	353
PflMI	CCANNNNNTGG	2 cut(s)	95, 308
PleI	GAGTC	2 cut(s)	352, 364
PpsI	GAGTC	2 cut(s)	352, 364
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	2 cut(s)	211, 263
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	353, 365
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	8 cut(s)	52, 75, 120, 204, 221, 229, 336, 379
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	5 cut(s)	62, 127, 149, 156, 422
SsiI	CCGC	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	226
TaqI	TCGA	1 cut(s)	354
TasI	AATT	5 cut(s)	62, 127, 149, 156, 422
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	73
Van91I	CCANNNNNTGG	2 cut(s)	95, 308
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	3 cut(s)	62, 149, 156
XhoI	CTCGAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.