pycom01g14550

Belongs to the chalcone isomerase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
14673969 .. 14678327
4359 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g14550.6

Sequence Viewer

Length: 1401 bp
ATGGCTCCAACGCCCTCGCTCGCCGGACTCCAGATCGAGACGACCGCGTTTCCACGGTCCGTCAAACCTCCGGGCTCCTCCAACACTCTGTTCCTCGGCGGCGCAGGGGTGAGGGGGCTGGAGATTCAGGGGAACTTCGTGAAGTTCACGGCGATCGGAGTGTATTTGGAGGATAACGCCGTGCCTCAGCTCGCCGTTAAGTGGAAGGGTAAGACGGCCGAGGAGTTGACGGAGTCCGTTGAGTTCTTCAGGGACATCGTTACAGGTCCATTTGAGAAATTCATTCAAGTGACAACGATACTGCCACTGACGGGCCAGCAATATGCTGAGAAAGTTTCGGAGAATTGCGTTGCCTTTTGGAAGTCTGTGGGAATTTACACTGATGCAGAAGAAAAAGCCATTGAAAAGTTCCTTGAGGTCTTCAAAGATCAAAATTTCCCGCCCGGCGCCTCCATTCTTTTCACGCAATCCCCCAAAGGATCACTGACGATTAGCTTCTCTAGAGATGCATCCGTACCTGAAGCTGCAAATGCGGTGATAGAAAACAAACTACTTTCCGAGGCAGTTCTAGAGTCGATCGTTGGAAAGCATGGTGTTTCCCCTGCAGCAAAGCAAAGTTTGGCCGTGAGGTTATCCGAATTGTTGAACGGGTGTAATGAATCTAATGATGGCAAAGCCGGAAATGAGAGAGATTGTCAAATGGCTCCACCACCGTCGCTCGCCGGACTTCAGATCGAAACGACTACGTTTCCACCGTCCGTCAAACCTCCGGGATCCTCCAACACTTTGTTCCTCGGCGGTGGAGGGGTGAGGGGGCTGGAGATTCAGGGGAACTTTGTGAAGTTCACAGCGATCGGAGTGTACTTGGAGGATAGCGCCATGCCTCAGCTCGCCTTTAAGTGGAAGGGTAAGACAGCCAAGGAGTTGACGGAGTCTGTTGAGTTCTTCAGGGACATCGTTACAGGTCCATTTGAGAAATTCATTCAAGTGACAACGATACTGCCACTGACAGGCCGGCAATACTCTGAGAAAGTTTCGGAGAATTGCGTTGCCTTTTGGAAGTCAGTCGGAATTTACACTGATGCAGAAGGCAAAGCCATTGAAAAGTTCCTTGAGGTCTTCAAAGATCAAAACTTCCCACCCGGCGCCTCCATTCTTTTCACGCAATCTCCCAAAGGATCACTAACGATTAGCTTCTCTAGAGATGCATCCGTACCTGAAGCTGCAAACGCGGTGATAGAAAACAAACTACTTTCCGAGGCAGTTCTAGAGTCGATCGTTGGAAAGCACGGTGTTTCTCCTGCAGCAAAGCAAAGTTTGGCCGCGAGGTTATCCGAATTGTTGAACGGGTGCAAGGAATCTAATGGTGCTGAAGCCGGAAATGAAAAAGTGGAGGCATGA

Protein Analysis

467

Amino Acids

49.92

Weight (kDa)

5.19

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 446, 1145
AccII CGCG 3 cut(s) 47, 1232, 1325
AciI CCGC 7 cut(s) 45, 99, 440, 533, 798, 1232, 1323
AclWI GGATC 4 cut(s) 487, 768, 781, 1186
AcoI YGGCCR 3 cut(s) 216, 621, 1320
AcsI RAATTY 5 cut(s) 278, 372, 433, 977, 1071
AcuI CTGAAG 6 cut(s) 232, 540, 713, 931, 1239, 1392
AcyI GRCGYC 2 cut(s) 447, 1146
AfaI GTAC 3 cut(s) 516, 863, 1215
AfiI CCNNNNNNNGG 4 cut(s) 201, 311, 900, 1010
AgsI TTSAA 8 cut(s) 287, 404, 424, 646, 986, 1103, 1123, 1345
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 773, 805
AluBI AGCT 6 cut(s) 190, 495, 524, 889, 1194, 1223
AluI AGCT 6 cut(s) 190, 495, 524, 889, 1194, 1223
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 487, 768, 781, 1186
AoxI GGCC 5 cut(s) 216, 313, 621, 1012, 1320
ApeKI GCWGC 4 cut(s) 524, 605, 1223, 1304
ApoI RAATTY 5 cut(s) 278, 372, 433, 977, 1071
AspLEI GCGC 4 cut(s) 104, 449, 878, 1148
AspS9I GGNCC 4 cut(s) 57, 266, 313, 965
AsuC2I CCSGG 4 cut(s) 72, 444, 771, 1143
AsuHPI GGTGA 4 cut(s) 121, 547, 820, 1246
AvaII GGWCC 3 cut(s) 57, 266, 965
BamHI GGATCC 1 cut(s) 773
BanI GGYRCC 2 cut(s) 446, 1145
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 412, 1111
BbvCI CCTCAGC 2 cut(s) 186, 885
BbvI GCAGC 4 cut(s) 511, 617, 1210, 1316
BccI CCATC 1 cut(s) 662
BceAI ACGGC 5 cut(s) 164, 165, 179, 231, 608
BcnI CCSGG 4 cut(s) 72, 444, 771, 1143
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 4 cut(s) 501, 569, 1200, 1268
BfmI CTRYAG 2 cut(s) 603, 1302
BfoI RGCGCY 3 cut(s) 450, 879, 1149
BisI GCNGC 6 cut(s) 100, 525, 606, 1224, 1305, 1323
BlsI GCNGC 6 cut(s) 101, 526, 607, 1225, 1306, 1324
Bme1390I CCNGG 4 cut(s) 72, 444, 771, 1143
Bme18I GGWCC 3 cut(s) 57, 266, 965
BmgT120I GGNCC 4 cut(s) 57, 266, 313, 965
BmiI GGNNCC 6 cut(s) 6, 76, 448, 705, 775, 1147
BmrFI CCNGG 4 cut(s) 72, 444, 771, 1143
BmsI GCATC 6 cut(s) 373, 496, 518, 1072, 1195, 1217
BpiI GAAGAC 2 cut(s) 412, 1111
BpmI CTGGAG 3 cut(s) 14, 140, 839
Bpu10I CCTNAGC 2 cut(s) 186, 885
BpuEI CTTGAG 2 cut(s) 434, 1133
BpuMI CCSGG 4 cut(s) 72, 444, 771, 1143
BsaHI GRCGYC 2 cut(s) 447, 1146
BsaJI CCNNGG 7 cut(s) 53, 94, 219, 558, 793, 918, 1257
BsaXI ACNNNNNCTCC 2 cut(s) 1153, 1183
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 311, 900, 1010
Bse118I RCCGGY 1 cut(s) 1014
BseDI CCNNGG 7 cut(s) 53, 94, 219, 558, 793, 918, 1257
BseGI GGATG 2 cut(s) 509, 1208
BseLI CCNNNNNNNGG 4 cut(s) 201, 311, 900, 1010
BseMII CTCAG 4 cut(s) 200, 318, 899, 1017
BseRI GAGGAG 2 cut(s) 67, 236
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 511, 617, 1210, 1316
Bsh1236I CGCG 3 cut(s) 47, 1232, 1325
Bsh1285I CGRYCG 6 cut(s) 45, 156, 219, 579, 855, 1278
BshFI GGCC 5 cut(s) 218, 315, 623, 1014, 1322
BshNI GGYRCC 2 cut(s) 446, 1145
BsiEI CGRYCG 6 cut(s) 45, 156, 219, 579, 855, 1278
BsiSI CCGG 9 cut(s) 24, 71, 444, 678, 723, 770, 1015, 1143, 1377
BslFI GGGAC 2 cut(s) 266, 965
BslI CCNNNNNNNGG 4 cut(s) 201, 311, 900, 1010
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 266, 965
BsnI GGCC 5 cut(s) 218, 315, 623, 1014, 1322
Bsp1286I GDGCHC 1 cut(s) 77
BspACI CCGC 7 cut(s) 45, 99, 440, 533, 798, 1232, 1323
BspANI GGCC 5 cut(s) 218, 315, 623, 1014, 1322
BspCNI CTCAG 4 cut(s) 199, 319, 898, 1018
BspFNI CGCG 3 cut(s) 47, 1232, 1325
BspLI GGNNCC 6 cut(s) 6, 76, 448, 705, 775, 1147
BspMAI CTGCAG 2 cut(s) 607, 1306
BspPI GGATC 4 cut(s) 487, 768, 781, 1186
BspT107I GGYRCC 2 cut(s) 446, 1145
BsrFI RCCGGY 1 cut(s) 1014
BssAI RCCGGY 1 cut(s) 1014
BssECI CCNNGG 7 cut(s) 53, 94, 219, 558, 793, 918, 1257
BssNI GRCGYC 2 cut(s) 447, 1146
BssT1I CCWWGG 1 cut(s) 918
Bst4CI ACNGT 4 cut(s) 57, 714, 756, 1292
BstACI GRCGYC 2 cut(s) 447, 1146
BstC8I GCNNGC 6 cut(s) 21, 192, 317, 720, 891, 1016
BstDEI CTNAG 4 cut(s) 186, 327, 885, 1026
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 509, 1208
BstFNI CGCG 3 cut(s) 47, 1232, 1325
BstH2I RGCGCY 3 cut(s) 450, 879, 1149
BstHHI GCGC 4 cut(s) 104, 449, 878, 1148
BstMAI GTCTC 1 cut(s) 32
BstMCI CGRYCG 6 cut(s) 45, 156, 219, 579, 855, 1278
BstMWI GCNNNNNNNGC 2 cut(s) 530, 1229
BstSCI CCNGG 4 cut(s) 70, 442, 769, 1141
BstSFI CTRYAG 2 cut(s) 603, 1302
BstUI CGCG 3 cut(s) 47, 1232, 1325
BstV1I GCAGC 4 cut(s) 511, 617, 1210, 1316
BstV2I GAAGAC 2 cut(s) 412, 1111
BstX2I RGATCY 1 cut(s) 773
BstYI RGATCY 1 cut(s) 773
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 5 cut(s) 218, 315, 623, 1014, 1322
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 509, 1208
BtsIMutI CAGTG 5 cut(s) 305, 378, 482, 1004, 1077
Cac8I GCNNGC 6 cut(s) 21, 192, 317, 720, 891, 1016
CfoI GCGC 4 cut(s) 104, 449, 878, 1148
Cfr10I RCCGGY 1 cut(s) 1014
Cfr13I GGNCC 4 cut(s) 57, 266, 313, 965
CpoI CGGWCCG 1 cut(s) 57
Csp6I GTAC 3 cut(s) 515, 862, 1214
CspI CGGWCCG 1 cut(s) 57
CviAII CATG 3 cut(s) 590, 880, 1398
CviQI GTAC 3 cut(s) 515, 862, 1214
DdeI CTNAG 4 cut(s) 186, 327, 885, 1026
DinI GGCGCC 2 cut(s) 448, 1147
EaeI YGGCCR 3 cut(s) 216, 621, 1320
EagI CGGCCG 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 918
Eco24I GRGCYC 1 cut(s) 77
Eco47I GGWCC 3 cut(s) 57, 266, 965
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 6 cut(s) 232, 540, 713, 931, 1239, 1392
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 2 cut(s) 511, 1210
EcoT38I GRGCYC 1 cut(s) 77
EgeI GGCGCC 2 cut(s) 448, 1147
EheI GGCGCC 2 cut(s) 448, 1147
ErhI CCWWGG 1 cut(s) 918
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 3 cut(s) 593, 883, 1401
FaiI YATR 4 cut(s) 324, 591, 881, 1399
FaqI GGGAC 2 cut(s) 266, 965
FatI CATG 3 cut(s) 589, 879, 1397
FauI CCCGC 1 cut(s) 447
Fnu4HI GCNGC 6 cut(s) 100, 525, 606, 1224, 1305, 1323
FokI GGATG 2 cut(s) 496, 1195
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 100, 525, 606, 1224, 1305, 1323
FspBI CTAG 4 cut(s) 501, 569, 1200, 1268
GlaI GCGC 4 cut(s) 103, 448, 877, 1147
GluI GCNGC 6 cut(s) 100, 525, 606, 1224, 1305, 1323
GsuI CTGGAG 3 cut(s) 14, 140, 839
HaeII RGCGCY 3 cut(s) 450, 879, 1149
HaeIII GGCC 5 cut(s) 218, 315, 623, 1014, 1322
HapII CCGG 9 cut(s) 24, 71, 444, 678, 723, 770, 1015, 1143, 1377
HhaI GCGC 4 cut(s) 104, 449, 878, 1148
Hin1I GRCGYC 2 cut(s) 447, 1146
Hin1II CATG 3 cut(s) 593, 883, 1401
Hin6I GCGC 4 cut(s) 102, 447, 876, 1146
HinP1I GCGC 4 cut(s) 102, 447, 876, 1146
HincII GTYRAC 2 cut(s) 228, 927
HindII GTYRAC 2 cut(s) 228, 927
HinfI GANTC 9 cut(s) 27, 124, 233, 572, 659, 823, 932, 1271, 1358
HpaII CCGG 9 cut(s) 24, 71, 444, 678, 723, 770, 1015, 1143, 1377
HphI GGTGA 4 cut(s) 121, 547, 820, 1246
Hpy166II GTNNAC 5 cut(s) 147, 228, 846, 862, 927
Hpy188III TCNNGA 7 cut(s) 31, 37, 139, 501, 569, 1200, 1268
Hpy8I GTNNAC 5 cut(s) 147, 228, 846, 862, 927
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 3 cut(s) 199, 898, 1082
HpyCH4III ACNGT 4 cut(s) 57, 714, 756, 1292
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 9 cut(s) 386, 509, 527, 605, 1085, 1208, 1226, 1304, 1353
HpyF10VI GCNNNNNNNGC 2 cut(s) 530, 1229
HpyF3I CTNAG 4 cut(s) 186, 327, 885, 1026
HpySE526I ACGT 1 cut(s) 746
Hsp92I GRCGYC 2 cut(s) 447, 1146
Hsp92II CATG 3 cut(s) 593, 883, 1401
HspAI GCGC 4 cut(s) 102, 447, 876, 1146
KasI GGCGCC 2 cut(s) 446, 1145
KroI GCCGGC 1 cut(s) 1014
KroNI GCCGGC 1 cut(s) 1016
LmnI GCTCC 3 cut(s) 10, 80, 709
Lsp1109I GCAGC 4 cut(s) 511, 617, 1210, 1316
LweI GCATC 6 cut(s) 373, 496, 518, 1072, 1195, 1217
MaeI CTAG 4 cut(s) 501, 569, 1200, 1268
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 4 cut(s) 259, 289, 958, 988
MboII GAAGA 5 cut(s) 238, 401, 412, 937, 1111
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 9 cut(s) 278, 343, 372, 433, 638, 977, 1042, 1071, 1337
Mly113I GGCGCC 2 cut(s) 447, 1146
MlyI GAGTC 5 cut(s) 21, 242, 581, 941, 1280
MmeI TCCRAC 6 cut(s) 32, 105, 562, 804, 1048, 1261
Mph1103I ATGCAT 2 cut(s) 511, 1210
MroNI GCCGGC 1 cut(s) 1014
MseI TTAA 2 cut(s) 198, 897
MslI CAYNNNNRTG 2 cut(s) 287, 986
MspI CCGG 9 cut(s) 24, 71, 444, 678, 723, 770, 1015, 1143, 1377
MspR9I CCNGG 4 cut(s) 72, 444, 771, 1143
MvnI CGCG 3 cut(s) 47, 1232, 1325
MwoI GCNNNNNNNGC 2 cut(s) 530, 1229
NaeI GCCGGC 1 cut(s) 1016
NarI GGCGCC 2 cut(s) 447, 1146
NciI CCSGG 4 cut(s) 72, 444, 771, 1143
NgoMIV GCCGGC 1 cut(s) 1014
NlaIII CATG 3 cut(s) 593, 883, 1401
NlaIV GGNNCC 6 cut(s) 6, 76, 448, 705, 775, 1147
NmeAIII GCCGAG 3 cut(s) 75, 244, 774
NmuCI GTSAC 2 cut(s) 289, 988
NsiI ATGCAT 2 cut(s) 511, 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 1016
PfeI GAWTC 4 cut(s) 124, 659, 823, 1358
PflFI GACNNNGTC 2 cut(s) 232, 931
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 6 cut(s) 101, 526, 607, 1225, 1306, 1324
Ple19I CGATCG 4 cut(s) 156, 579, 855, 1278
PleI GAGTC 5 cut(s) 21, 241, 580, 940, 1279
PluTI GGCGCC 2 cut(s) 450, 1149
PpsI GAGTC 5 cut(s) 21, 241, 580, 940, 1279
PspN4I GGNNCC 6 cut(s) 6, 76, 448, 705, 775, 1147
PspPI GGNCC 4 cut(s) 57, 266, 313, 965
PstI CTGCAG 2 cut(s) 607, 1306
PsuI RGATCY 1 cut(s) 773
PsyI GACNNNGTC 2 cut(s) 232, 931
PvuI CGATCG 4 cut(s) 156, 579, 855, 1278
RsaI GTAC 3 cut(s) 516, 863, 1215
RsaNI GTAC 3 cut(s) 515, 862, 1214
RseI CAYNNNNRTG 2 cut(s) 287, 986
Rsr2I CGGWCCG 1 cut(s) 57
RsrII CGGWCCG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 198, 897
SatI GCNGC 6 cut(s) 100, 525, 606, 1224, 1305, 1323
Sau96I GGNCC 4 cut(s) 57, 266, 313, 965
SchI GAGTC 5 cut(s) 21, 242, 581, 941, 1280
ScrFI CCNGG 4 cut(s) 72, 444, 771, 1143
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 6 cut(s) 373, 496, 518, 1072, 1195, 1217
SfcI CTRYAG 2 cut(s) 603, 1302
SfoI GGCGCC 2 cut(s) 448, 1147
SinI GGWCC 3 cut(s) 57, 266, 965
SmiMI CAYNNNNRTG 2 cut(s) 287, 986
SmlI CTYRAG 2 cut(s) 413, 1112
SmoI CTYRAG 2 cut(s) 413, 1112
Sse9I AATT 9 cut(s) 278, 343, 372, 433, 638, 977, 1042, 1071, 1337
SsiI CCGC 7 cut(s) 45, 99, 440, 533, 798, 1232, 1323
SspDI GGCGCC 2 cut(s) 446, 1145
SspMI CTAG 4 cut(s) 501, 569, 1200, 1268
StyD4I CCNGG 4 cut(s) 70, 442, 769, 1141
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 4 cut(s) 57, 714, 756, 1292
TaiI ACGT 1 cut(s) 749
TaqI TCGA 4 cut(s) 36, 575, 735, 1274
TasI AATT 9 cut(s) 278, 343, 372, 433, 638, 977, 1042, 1071, 1337
TatI WGTACW 1 cut(s) 861
TauI GCSGC 2 cut(s) 102, 1325
TfiI GAWTC 4 cut(s) 124, 659, 823, 1358
Tru1I TTAA 2 cut(s) 198, 897
Tru9I TTAA 2 cut(s) 198, 897
TscAI CASTG 5 cut(s) 312, 385, 489, 1011, 1084
TseFI GTSAC 2 cut(s) 289, 988
TseI GCWGC 4 cut(s) 524, 605, 1223, 1304
Tsp45I GTSAC 2 cut(s) 289, 988
TspDTI ATGAA 4 cut(s) 271, 672, 970, 1398
TspGWI ACGGA 7 cut(s) 49, 226, 245, 502, 748, 944, 1201
TspRI CASTG 5 cut(s) 312, 385, 489, 1011, 1084
Tth111I GACNNNGTC 2 cut(s) 232, 931
VpaK11BI GGWCC 3 cut(s) 57, 266, 965
XapI RAATTY 5 cut(s) 278, 372, 433, 977, 1071
XbaI TCTAGA 4 cut(s) 500, 568, 1199, 1267
XspI CTAG 4 cut(s) 501, 569, 1200, 1268
Zsp2I ATGCAT 2 cut(s) 511, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.