MD01G1118100.v1.1

Belongs to the chalcone isomerase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
23197949 .. 23201355
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1118100.v1.1.491

Sequence Viewer

Length: 1374 bp
ATGGCTCCAACGCCATCGCTCGCCGGACTCCAGGTCGAGACGACTGCGTTTCCACCGTCCGTCAAACCTCCGGGCTCCCCCAACACTCTGTTCCTCGGCGGCGCAGGGGTGAGGGGGCTGGAGATTCAGGGGAACTTCGTGAAGTTCACGGCGATCGGAGTGTACTTGGAGGAAAACGCCGTGCCTCTGCTCGCCGTTAAGTGGAAGGGTAAGACGGCCGAGGAGTTGACGGAGTCCGTTGAGTTCTTCAGGGACATTGTTACAGGTAACACGGATTTCTTCGCTGGCCAGCAATACTCTGACAAAGTTTCGGAGAATTGCGTTGCCTTTTGGAAGTCAATCGGAATTTACACTGATGCAGAAGGCAAAGCCATTGAAAAGTTCCTTGAGGTCTTCAAAGATCAAAACTTCCCACCCGGCGCCTCCATTCTTTTCACGCAATCTCCCAAAGGATCACTAACGATTAGCTTCTCTAGAGATGCATCCGTACCTGAAGCTGCAAACACGGTGATAGAAAACAAACTACTTTCCGAGGCAGTTCTAGAGTCGATCGTTGGAAAGCACGGTGTTTCCCCTGCAGCAAAGCAAAGTTTGGCCGAAAGGTTATCCAAATTGTTGAACGGGTGTAATGAATCTAAAGATGCCAAAGCCGGAAATGAGAAAGATTGTCAAATAGCTCCACCACCGTCGCTCGCCGGACTTCAGGTCGAAACGACTGCGTTTCCACCGTCCGTCAAACCTCCGGGCTCCTCCAACACTCTGTTCCTCGGCGGCGCAGGGGTGAGGGGGCTGGAGATTCAGGGGAACTTCGTGAAGTTCACGGCAATCGGAGTGTACTTGGAGGATAACGCCGTGCCTCAGCTCGCCGTTAAGTGGAAGGGTAAGACAGCCGAGGAGTTGATGGAGTCCGTTGAGTTCTTCAGGGACATCGTTACAGGTCCGTTTGAGAAATTCATTCAAGTGACAACGATATTGCCACTGACAGGCCAGCAATACTCTGACAAAGTTTCGGAGAATTGCGTTGTCTTTTGGAAGTCAGTCGGAATTTACACTGATGCAGAAGGCAAAGCCATTGAAAAGTTCCTTGAGGTCTTCAAAGATCAAAATTTCCCACCCGGTGCTTCCATTCTTTTCACACAATCTCCCAAAGGATCACTAACGATTAGCTTCTCTAGAAATGCATCCGTAGCTGAAGCTGCAAATGCGGTGATAGAAAACAAACTACTTTCCGAGGCAGTTCTAGAGTCGATCGTTGGAAAGCACGGTGTTTCTCCTGCAGCAAAGCAAAGTTTGGCCGCGAGGTTATCCGAATTGTTGAATGGGTGCAAGGAATCTAATGGTGCTGAAGCCGGAAATGAAAAAGTGGAGGCATGA

Protein Analysis

458

Amino Acids

48.71

Weight (kDa)

5.11

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chalcone PF02431 12 - 205 9.1e-92 Chalcone-flavanone isomerase
Chalcone PF02431 236 - 438 4.6e-104 Chalcone-flavanone isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccII CGCG 1 cut(s) 1298
AciI CCGC 4 cut(s) 99, 771, 1205, 1296
AclWI GGATC 2 cut(s) 460, 1159
AcoI YGGCCR 4 cut(s) 216, 286, 594, 1293
AcsI RAATTY 4 cut(s) 345, 950, 1044, 1105
AcuI CTGAAG 6 cut(s) 232, 513, 686, 904, 1212, 1365
AcyI GRCGYC 1 cut(s) 420
AdeI CACNNNGTG 1 cut(s) 1118
AfaI GTAC 3 cut(s) 164, 489, 836
AfiI CCNNNNNNNGG 3 cut(s) 201, 873, 983
AgsI TTSAA 7 cut(s) 377, 397, 619, 959, 1076, 1096, 1318
AhdI GACNNNNNGTC 2 cut(s) 32, 704
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 746, 778
AluBI AGCT 7 cut(s) 468, 497, 677, 862, 1167, 1190, 1196
AluI AGCT 7 cut(s) 468, 497, 677, 862, 1167, 1190, 1196
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 460, 1159
AoxI GGCC 5 cut(s) 216, 286, 594, 985, 1293
ApeKI GCWGC 4 cut(s) 497, 578, 1196, 1277
ApoI RAATTY 4 cut(s) 345, 950, 1044, 1105
AspLEI GCGC 3 cut(s) 104, 422, 776
AspS9I GGNCC 1 cut(s) 938
AsuC2I CCSGG 4 cut(s) 72, 417, 744, 1116
AsuHPI GGTGA 4 cut(s) 121, 520, 793, 1219
AvaII GGWCC 1 cut(s) 938
BalI TGGCCA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 77, 749
BbsI GAAGAC 2 cut(s) 385, 1084
BbvCI CCTCAGC 1 cut(s) 858
BbvI GCAGC 4 cut(s) 484, 590, 1183, 1289
BccI CCATC 2 cut(s) 22, 895
BceAI ACGGC 7 cut(s) 164, 165, 179, 231, 836, 837, 851
BcgI CGANNNNNNTGC 4 cut(s) 26, 60, 698, 732
BciT130I CCWGG 1 cut(s) 32
BcnI CCSGG 4 cut(s) 72, 417, 744, 1116
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 4 cut(s) 474, 542, 1173, 1241
BfmI CTRYAG 2 cut(s) 576, 1275
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 7 cut(s) 100, 498, 579, 772, 1197, 1278, 1296
BlsI GCNGC 7 cut(s) 101, 499, 580, 773, 1198, 1279, 1297
Bme1390I CCNGG 5 cut(s) 32, 72, 417, 744, 1116
Bme18I GGWCC 1 cut(s) 938
BmeRI GACNNNNNGTC 2 cut(s) 32, 704
BmgT120I GGNCC 1 cut(s) 938
BmiI GGNNCC 4 cut(s) 6, 76, 421, 748
BmrFI CCNGG 5 cut(s) 32, 72, 417, 744, 1116
BmsI GCATC 6 cut(s) 346, 469, 491, 631, 1045, 1190
BpiI GAAGAC 2 cut(s) 385, 1084
BpmI CTGGAG 3 cut(s) 14, 140, 812
Bpu10I CCTNAGC 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 407, 1106
BpuMI CCSGG 4 cut(s) 72, 417, 744, 1116
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 6 cut(s) 94, 219, 531, 766, 891, 1230
BsaXI ACNNNNNCTCC 4 cut(s) 427, 457, 1126, 1156
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 873, 983
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 6 cut(s) 94, 219, 531, 766, 891, 1230
BseGI GGATG 2 cut(s) 482, 1181
BseLI CCNNNNNNNGG 3 cut(s) 201, 873, 983
BseMII CTCAG 1 cut(s) 872
BseRI GAGGAG 3 cut(s) 236, 739, 908
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 484, 590, 1183, 1289
Bsh1236I CGCG 1 cut(s) 1298
Bsh1285I CGRYCG 4 cut(s) 156, 219, 552, 1251
BshFI GGCC 5 cut(s) 218, 288, 596, 987, 1295
BshNI GGYRCC 1 cut(s) 419
BsiEI CGRYCG 4 cut(s) 156, 219, 552, 1251
BsiSI CCGG 8 cut(s) 24, 71, 417, 651, 696, 743, 1116, 1350
BslFI GGGAC 2 cut(s) 266, 938
BslI CCNNNNNNNGG 3 cut(s) 201, 873, 983
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 2 cut(s) 266, 938
BsnI GGCC 5 cut(s) 218, 288, 596, 987, 1295
Bsp1286I GDGCHC 2 cut(s) 77, 749
Bsp143I GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
BspACI CCGC 4 cut(s) 99, 771, 1205, 1296
BspANI GGCC 5 cut(s) 218, 288, 596, 987, 1295
BspCNI CTCAG 1 cut(s) 871
BspFNI CGCG 1 cut(s) 1298
BspLI GGNNCC 4 cut(s) 6, 76, 421, 748
BspMAI CTGCAG 2 cut(s) 580, 1279
BspPI GGATC 2 cut(s) 460, 1159
BspT107I GGYRCC 1 cut(s) 419
BssECI CCNNGG 6 cut(s) 94, 219, 531, 766, 891, 1230
BssMI GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
BssNI GRCGYC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 6 cut(s) 57, 508, 566, 687, 729, 1265
BstACI GRCGYC 1 cut(s) 420
BstC8I GCNNGC 7 cut(s) 21, 192, 286, 290, 693, 864, 989
BstDEI CTNAG 1 cut(s) 858
BstF5I GGATG 2 cut(s) 482, 1181
BstFNI CGCG 1 cut(s) 1298
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 3 cut(s) 104, 422, 776
BstKTI GATC 7 cut(s) 156, 403, 455, 552, 1102, 1154, 1251
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
BstMCI CGRYCG 4 cut(s) 156, 219, 552, 1251
BstMWI GCNNNNNNNGC 3 cut(s) 1187, 1196, 1202
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 5 cut(s) 30, 70, 415, 742, 1114
BstSFI CTRYAG 2 cut(s) 576, 1275
BstUI CGCG 1 cut(s) 1298
BstV1I GCAGC 4 cut(s) 484, 590, 1183, 1289
BstV2I GAAGAC 2 cut(s) 385, 1084
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 5 cut(s) 218, 288, 596, 987, 1295
BtsCI GGATG 2 cut(s) 482, 1181
BtsIMutI CAGTG 3 cut(s) 351, 977, 1050
Cac8I GCNNGC 7 cut(s) 21, 192, 286, 290, 693, 864, 989
CfoI GCGC 3 cut(s) 104, 422, 776
Cfr13I GGNCC 1 cut(s) 938
Csp6I GTAC 3 cut(s) 163, 488, 835
CviAII CATG 1 cut(s) 1371
CviQI GTAC 3 cut(s) 163, 488, 835
DdeI CTNAG 1 cut(s) 858
DinI GGCGCC 1 cut(s) 421
DpnI GATC 7 cut(s) 155, 402, 454, 551, 1101, 1153, 1250
DpnII GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
DraIII CACNNNGTG 1 cut(s) 1118
DriI GACNNNNNGTC 2 cut(s) 32, 704
EaeI YGGCCR 4 cut(s) 216, 286, 594, 1293
EagI CGGCCG 1 cut(s) 216
Eam1105I GACNNNNNGTC 2 cut(s) 32, 704
EclXI CGGCCG 1 cut(s) 216
Eco24I GRGCYC 2 cut(s) 77, 749
Eco47I GGWCC 1 cut(s) 938
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 6 cut(s) 232, 513, 686, 904, 1212, 1365
EcoRII CCWGG 1 cut(s) 30
EcoT22I ATGCAT 2 cut(s) 484, 1183
EcoT38I GRGCYC 2 cut(s) 77, 749
EgeI GGCGCC 1 cut(s) 421
EheI GGCGCC 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 1374
FaiI YATR 1 cut(s) 1372
FaqI GGGAC 2 cut(s) 266, 938
FatI CATG 1 cut(s) 1370
Fnu4HI GCNGC 7 cut(s) 100, 498, 579, 772, 1197, 1278, 1296
FokI GGATG 2 cut(s) 469, 1168
FriOI GRGCYC 2 cut(s) 77, 749
Fsp4HI GCNGC 7 cut(s) 100, 498, 579, 772, 1197, 1278, 1296
FspBI CTAG 4 cut(s) 474, 542, 1173, 1241
GlaI GCGC 3 cut(s) 103, 421, 775
GluI GCNGC 7 cut(s) 100, 498, 579, 772, 1197, 1278, 1296
GsuI CTGGAG 3 cut(s) 14, 140, 812
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 5 cut(s) 218, 288, 596, 987, 1295
HapII CCGG 8 cut(s) 24, 71, 417, 651, 696, 743, 1116, 1350
HhaI GCGC 3 cut(s) 104, 422, 776
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 1 cut(s) 1374
Hin6I GCGC 3 cut(s) 102, 420, 774
HinP1I GCGC 3 cut(s) 102, 420, 774
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 9 cut(s) 27, 124, 233, 545, 632, 796, 905, 1244, 1331
HpaII CCGG 8 cut(s) 24, 71, 417, 651, 696, 743, 1116, 1350
HphI GGTGA 4 cut(s) 121, 520, 793, 1219
Hpy166II GTNNAC 5 cut(s) 147, 163, 228, 819, 835
Hpy188III TCNNGA 7 cut(s) 37, 139, 474, 542, 811, 1173, 1241
Hpy8I GTNNAC 5 cut(s) 147, 163, 228, 819, 835
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 4 cut(s) 199, 356, 871, 1055
HpyCH4III ACNGT 6 cut(s) 57, 508, 566, 687, 729, 1265
HpyCH4V TGCA 9 cut(s) 359, 482, 500, 578, 1058, 1181, 1199, 1277, 1326
HpyF10VI GCNNNNNNNGC 3 cut(s) 1187, 1196, 1202
HpyF3I CTNAG 1 cut(s) 858
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 1 cut(s) 1374
HspAI GCGC 3 cut(s) 102, 420, 774
KasI GGCGCC 1 cut(s) 419
Kzo9I GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
LmnI GCTCC 4 cut(s) 10, 80, 682, 752
Lsp1109I GCAGC 4 cut(s) 484, 590, 1183, 1289
LweI GCATC 6 cut(s) 346, 469, 491, 631, 1045, 1190
MaeI CTAG 4 cut(s) 474, 542, 1173, 1241
MaeIII GTNAC 4 cut(s) 259, 266, 931, 961
MalI GATC 7 cut(s) 155, 402, 454, 551, 1101, 1153, 1250
MboI GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
MboII GAAGA 5 cut(s) 238, 271, 385, 910, 1084
MhlI GDGCHC 2 cut(s) 77, 749
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 8 cut(s) 316, 345, 611, 950, 1015, 1044, 1105, 1310
MluNI TGGCCA 1 cut(s) 288
Mly113I GGCGCC 1 cut(s) 420
MlyI GAGTC 5 cut(s) 21, 242, 554, 914, 1253
MmeI TCCRAC 5 cut(s) 32, 535, 777, 1021, 1234
Mox20I TGGCCA 1 cut(s) 288
Mph1103I ATGCAT 2 cut(s) 484, 1183
MscI TGGCCA 1 cut(s) 288
MseI TTAA 2 cut(s) 198, 870
MslI CAYNNNNRTG 1 cut(s) 959
Msp20I TGGCCA 1 cut(s) 288
MspI CCGG 8 cut(s) 24, 71, 417, 651, 696, 743, 1116, 1350
MspR9I CCNGG 5 cut(s) 32, 72, 417, 744, 1116
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 1298
MwoI GCNNNNNNNGC 3 cut(s) 1187, 1196, 1202
NarI GGCGCC 1 cut(s) 420
NciI CCSGG 4 cut(s) 72, 417, 744, 1116
NdeII GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
NlaIII CATG 1 cut(s) 1374
NlaIV GGNNCC 4 cut(s) 6, 76, 421, 748
NmeAIII GCCGAG 4 cut(s) 75, 244, 747, 916
NmuCI GTSAC 1 cut(s) 961
NsiI ATGCAT 2 cut(s) 484, 1183
PfeI GAWTC 4 cut(s) 124, 632, 796, 1331
PflFI GACNNNGTC 1 cut(s) 232
PkrI GCNGC 7 cut(s) 101, 499, 580, 773, 1198, 1279, 1297
Ple19I CGATCG 3 cut(s) 156, 552, 1251
PleI GAGTC 5 cut(s) 21, 241, 553, 913, 1252
PluTI GGCGCC 1 cut(s) 423
PpsI GAGTC 5 cut(s) 21, 241, 553, 913, 1252
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 4 cut(s) 6, 76, 421, 748
PspPI GGNCC 1 cut(s) 938
PstI CTGCAG 2 cut(s) 580, 1279
PsyI GACNNNGTC 1 cut(s) 232
PvuI CGATCG 3 cut(s) 156, 552, 1251
RsaI GTAC 3 cut(s) 164, 489, 836
RsaNI GTAC 3 cut(s) 163, 488, 835
RseI CAYNNNNRTG 1 cut(s) 959
SaqAI TTAA 2 cut(s) 198, 870
SatI GCNGC 7 cut(s) 100, 498, 579, 772, 1197, 1278, 1296
Sau3AI GATC 7 cut(s) 153, 400, 452, 549, 1099, 1151, 1248
Sau96I GGNCC 1 cut(s) 938
SchI GAGTC 5 cut(s) 21, 242, 554, 914, 1253
ScrFI CCNGG 5 cut(s) 32, 72, 417, 744, 1116
SduI GDGCHC 2 cut(s) 77, 749
SfaNI GCATC 6 cut(s) 346, 469, 491, 631, 1045, 1190
SfcI CTRYAG 2 cut(s) 576, 1275
SfoI GGCGCC 1 cut(s) 421
SinI GGWCC 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 2 cut(s) 386, 1085
SmoI CTYRAG 2 cut(s) 386, 1085
Sse9I AATT 8 cut(s) 316, 345, 611, 950, 1015, 1044, 1105, 1310
SsiI CCGC 4 cut(s) 99, 771, 1205, 1296
SspDI GGCGCC 1 cut(s) 419
SspMI CTAG 4 cut(s) 474, 542, 1173, 1241
StyD4I CCNGG 5 cut(s) 30, 70, 415, 742, 1114
TaaI ACNGT 6 cut(s) 57, 508, 566, 687, 729, 1265
TaqI TCGA 4 cut(s) 36, 548, 708, 1247
TasI AATT 8 cut(s) 316, 345, 611, 950, 1015, 1044, 1105, 1310
TatI WGTACW 2 cut(s) 162, 834
TauI GCSGC 3 cut(s) 102, 774, 1298
TfiI GAWTC 4 cut(s) 124, 632, 796, 1331
Tru1I TTAA 2 cut(s) 198, 870
Tru9I TTAA 2 cut(s) 198, 870
TscAI CASTG 3 cut(s) 358, 984, 1057
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 4 cut(s) 497, 578, 1196, 1277
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 3 cut(s) 645, 943, 1371
TspGWI ACGGA 9 cut(s) 49, 226, 245, 287, 475, 721, 898, 930, 1174
TspRI CASTG 3 cut(s) 358, 984, 1057
Tth111I GACNNNGTC 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 4 cut(s) 345, 950, 1044, 1105
XbaI TCTAGA 4 cut(s) 473, 541, 1172, 1240
XspI CTAG 4 cut(s) 474, 542, 1173, 1241
Zsp2I ATGCAT 2 cut(s) 484, 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.