Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024062.1

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

2004 .. 2386

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024062.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggaggtcttcaaagatcagaccttcccacctggtgcttctattctcttcacacaatcaccaaatggatcattgatgattggcttctccaaagatggttccataccagcagttggaaatgcggtgattgaaaacaagctactttcagagtcagttctcgagtcaatcattggaaagcaaggtgtttctcctgaagcaaggaaatgtgtggctacaaggctatcagaattgttgaaagagagtgatgattgtgtggccggaaatggggaagtaaaggaagcagaagttaaggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

98

Amino Acids

10.31

Weight (kDa)

4.76

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	113, 264
AgsI	TTSAA	3 cut(s)	13, 131, 235
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	51, 136
AvaI	CYCGRG	1 cut(s)	158
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 264
BseBI	CCWGG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	113, 264
BshFI	GGCC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	113, 264
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	16, 68
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	76
BssMI	GATC	2 cut(s)	16, 68
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	19, 71
BstMBI	GATC	2 cut(s)	16, 68
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	257
CsiI	ACCWGGT	1 cut(s)	31
CviAII	CATG	1 cut(s)	294
CviJI	RGCY	5 cut(s)	84, 139, 212, 220, 257
CviKI_1	RGCY	5 cut(s)	84, 139, 212, 220, 257
DpnI	GATC	2 cut(s)	18, 70
DpnII	GATC	2 cut(s)	16, 68
DraIII	CACNNNGTG	1 cut(s)	35
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	297
FaiI	YATR	2 cut(s)	104, 295
FatI	CATG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	297
HinfI	GANTC	2 cut(s)	149, 161
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	2 cut(s)	51, 136
Hpy188I	TCNGA	3 cut(s)	21, 148, 226
Hpy188III	TCNNGA	2 cut(s)	158, 191
HpyAV	CCTTC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	16, 68
LpnPI	CCDG	5 cut(s)	18, 45, 120, 204, 271
MabI	ACCWGGT	1 cut(s)	31
MalI	GATC	2 cut(s)	18, 70
MboI	GATC	2 cut(s)	16, 68
MboII	GAAGA	1 cut(s)	40
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	158, 170
MmeI	TCCRAC	1 cut(s)	94
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	16, 68
NlaIII	CATG	1 cut(s)	297
NlaIV	GGNNCC	1 cut(s)	100
PaeR7I	CTCGAG	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	113
PleI	GAGTC	2 cut(s)	157, 169
PpsI	GAGTC	2 cut(s)	157, 169
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	16, 68
SchI	GAGTC	2 cut(s)	158, 170
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	5 cut(s)	9, 26, 34, 141, 184
SexAI	ACCWGGT	1 cut(s)	31
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	113
XhoI	CTCGAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.