Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

20280396 .. 20280587

Gene Structure 192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGAGAATAAACTACTCGGAGAGGCAATTCTGGAGTCGATCATCGGAAAGCACGGTGTTTCGCCAGCGGCAAGGCAAAGCTTGGCCGAGAGGTTATCGGATTTGTTGACTGAGAAGCCTGAACTGTTGGGGGTTGGAAAGGCCACAAACCAAGTTGAGGTTGGGGCAACTGATCAGAGAGAAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

64

Amino Acids

6.77

Weight (kDa)

5.03

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	1 - 35	4e-12	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	157
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
AoxI	GGCC	2 cut(s)	84, 141
BclI	TGATCA	1 cut(s)	172
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	86, 143
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	2 cut(s)	86, 143
Bsp143I	GATC	2 cut(s)	39, 172
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	86, 143
BspCNI	CTCAG	1 cut(s)	103
BssMI	GATC	2 cut(s)	39, 172
Bst4CI	ACNGT	2 cut(s)	56, 126
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	42, 175
BstMBI	GATC	2 cut(s)	39, 172
BsuRI	GGCC	2 cut(s)	86, 143
Cac8I	GCNNGC	1 cut(s)	66
CviJI	RGCY	4 cut(s)	81, 86, 118, 143
CviKI_1	RGCY	4 cut(s)	81, 86, 118, 143
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	41, 174
DpnII	GATC	2 cut(s)	39, 172
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	86, 143
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	4 cut(s)	20, 47, 100, 177
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	108
HpyCH4III	ACNGT	2 cut(s)	56, 126
HpyF3I	CTNAG	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	39, 172
LpnPI	CCDG	3 cut(s)	17, 78, 132
MalI	GATC	2 cut(s)	41, 174
MboI	GATC	2 cut(s)	39, 172
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	3 cut(s)	16, 84, 151
MspA1I	CMGCKG	1 cut(s)	68
NdeII	GATC	2 cut(s)	39, 172
NmeAIII	GCCGAG	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	39, 172
SchI	GAGTC	1 cut(s)	44
SetI	ASST	3 cut(s)	83, 95, 162
SgeI	CNNG	9 cut(s)	29, 44, 65, 77, 84, 94, 100, 131, 164
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	56, 126
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	27
TauI	GCSGC	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.