Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

20276806 .. 20278711

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17740.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGCTCGTCGACACTCCCCCGCCTTCCCTTGAGGGGCCGGTGAAACACCCTCCACGTTTTTTAACACTCCCACCTGCCTCTTCTTACTCATCAAACCTCCTCCCATTACTCAGTGGACCGACCAATTACCACCTCTATTTAAACCCACCGTTCCCGACAGCTAACCCCATCTCTCTCTCTGCACAATATATAAATTATCAAATGGCTCCACCACCATCGCTCGCTGGACTCCAGGTCGAGGCCACTGCGTTTCCACCGTCCGTCAACCCTCCGGGCTCCTCCAACACTTTGTTCCTCGGCGGCGCAGGGGTGAGGGGGCTGGAGATTCAGGGCACCTTCGTGAAGTTCACGGCGATCGGAGTGTACTTGGAGGATAACGCCGTGCCTCTGCTAGCCGTTAAGTGGAAGGGTAAGACCGCCGAGGAGTTGTCGGAGTCCGTTGAGTTCTTCAGGGACATCGTTACAGGTCCGTTTGAGAAGTTCATTCAGGTGACAATGATACTGCCACTGACGGGCCAGCAATACTCTGAGAAAGTTTCGGAGAATTGCGTTGCCTTTTGGAAGTCGGTGGGAATTTACACTGATGCAGAAGGCAAAGCCATTGAAAAGTTCATTGAGGTCTTCAAAGATCAAAACTTCCCACCGGGCGCCTCTATTCTCTTCACACAATCTCCGAAAGGATCACTCACGATTTGCTTCTCCAAAGATGCATCCGTGCCAGAAGCTGCAAATGCGGTGATAGAAAACAAACTACTTTCCGAGGCAGTTCTAGAGATCGATCGTGGGAAAGCACGGTGTTTCCCCTGCAGCAAAGCGAAGTTTGGCCGCGAGGTTATCCGAACTGTTGAACGGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

286

Amino Acids

30.94

Weight (kDa)

5.84

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	2 cut(s)	332, 647
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	828
AciI	CCGC	5 cut(s)	20, 300, 417, 734, 826
AclWI	GGATC	1 cut(s)	688
AcoI	YGGCCR	1 cut(s)	823
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	33, 238, 402, 512
AgsI	TTSAA	3 cut(s)	605, 625, 848
AhdI	GACNNNNNGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	2 cut(s)	161, 725
AluI	AGCT	2 cut(s)	161, 725
AlwI	GGATC	1 cut(s)	688
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	4 cut(s)	35, 240, 514, 823
ApeKI	GCWGC	2 cut(s)	725, 807
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	305, 650
AspS9I	GGNCC	4 cut(s)	35, 116, 467, 514
AsuC2I	CCSGG	2 cut(s)	273, 645
AsuHPI	GGTGA	4 cut(s)	52, 322, 502, 748
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	116, 467
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	2 cut(s)	332, 647
BanII	GRGCYC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	712, 819
BccI	CCATC	2 cut(s)	176, 223
BceAI	ACGGC	3 cut(s)	365, 366, 380
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	2 cut(s)	273, 645
BfaI	CTAG	2 cut(s)	392, 770
BfmI	CTRYAG	1 cut(s)	805
BfoI	RGCGCY	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	4 cut(s)	301, 726, 808, 826
BlsI	GCNGC	4 cut(s)	302, 727, 809, 827
Bme1390I	CCNGG	3 cut(s)	233, 273, 645
Bme18I	GGWCC	2 cut(s)	116, 467
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgT120I	GGNCC	4 cut(s)	35, 116, 467, 514
BmiI	GGNNCC	5 cut(s)	36, 207, 277, 334, 649
BmrFI	CCNGG	3 cut(s)	233, 273, 645
BmsI	GCATC	3 cut(s)	574, 697, 719
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	613
BpmI	CTGGAG	2 cut(s)	215, 341
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	273, 645
Bsa29I	ATCGAT	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	295, 420, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 238, 402, 512
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	233
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	3 cut(s)	295, 420, 759
BseGI	GGATG	1 cut(s)	710
BseLI	CCNNNNNNNGG	4 cut(s)	33, 238, 402, 512
BseMII	CTCAG	2 cut(s)	124, 519
BseRI	GAGGAG	3 cut(s)	89, 268, 437
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	712, 819
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	828
Bsh1285I	CGRYCG	2 cut(s)	357, 781
BshFI	GGCC	4 cut(s)	37, 242, 516, 825
BshNI	GGYRCC	2 cut(s)	332, 647
BshVI	ATCGAT	1 cut(s)	777
BsiEI	CGRYCG	2 cut(s)	357, 781
BsiSI	CCGG	3 cut(s)	38, 272, 644
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	4 cut(s)	33, 238, 402, 512
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	4 cut(s)	37, 242, 516, 825
Bsp1286I	GDGCHC	2 cut(s)	278, 335
Bsp143I	GATC	5 cut(s)	354, 628, 680, 774, 778
BspACI	CCGC	5 cut(s)	20, 300, 417, 734, 826
BspANI	GGCC	4 cut(s)	37, 242, 516, 825
BspCNI	CTCAG	2 cut(s)	123, 520
BspDI	ATCGAT	1 cut(s)	777
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	5 cut(s)	36, 207, 277, 334, 649
BspMAI	CTGCAG	1 cut(s)	809
BspMI	ACCTGC	1 cut(s)	82
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	688
BspT107I	GGYRCC	2 cut(s)	332, 647
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	295, 420, 759
BssMI	GATC	5 cut(s)	354, 628, 680, 774, 778
BssNI	GRCGYC	1 cut(s)	648
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	4 cut(s)	150, 258, 795, 844
Bst6I	CTCTTC	2 cut(s)	85, 665
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	3 cut(s)	222, 393, 518
BstDEI	CTNAG	2 cut(s)	110, 528
BstF5I	GGATG	1 cut(s)	710
BstFNI	CGCG	1 cut(s)	828
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	305, 650
BstKTI	GATC	5 cut(s)	357, 631, 683, 777, 781
BstMBI	GATC	5 cut(s)	354, 628, 680, 774, 778
BstMCI	CGRYCG	2 cut(s)	357, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	231, 271, 643
BstSFI	CTRYAG	1 cut(s)	805
BstSLI	GKGCMC	1 cut(s)	335
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	712, 819
BstV2I	GAAGAC	1 cut(s)	613
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	4 cut(s)	37, 242, 516, 825
BsuTUI	ATCGAT	1 cut(s)	777
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	710
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	118, 243, 506, 579
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	222, 393, 518
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	2 cut(s)	305, 650
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	35, 116, 467, 514
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	1 cut(s)	364
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	2 cut(s)	110, 528
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	5 cut(s)	356, 630, 682, 776, 780
DpnII	GATC	5 cut(s)	354, 628, 680, 774, 778
DraI	TTTAAA	1 cut(s)	141
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	85, 665
Eam1105I	GACNNNNNGTC	1 cut(s)	233
EarI	CTCTTC	2 cut(s)	85, 665
Eco24I	GRGCYC	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	116, 467
Eco57I	CTGAAG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
FaiI	YATR	2 cut(s)	189, 191
FaqI	GGGAC	1 cut(s)	467
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	301, 726, 808, 826
FokI	GGATG	1 cut(s)	697
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	301, 726, 808, 826
FspBI	CTAG	2 cut(s)	392, 770
GlaI	GCGC	2 cut(s)	304, 649
GluI	GCNGC	4 cut(s)	301, 726, 808, 826
GsuI	CTGGAG	2 cut(s)	215, 341
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	4 cut(s)	37, 242, 516, 825
HapII	CCGG	3 cut(s)	38, 272, 644
HhaI	GCGC	2 cut(s)	305, 650
Hin1I	GRCGYC	1 cut(s)	648
Hin6I	GCGC	2 cut(s)	303, 648
HinP1I	GCGC	2 cut(s)	303, 648
HincII	GTYRAC	2 cut(s)	10, 265
HindII	GTYRAC	2 cut(s)	10, 265
HinfI	GANTC	3 cut(s)	228, 325, 434
HpaII	CCGG	3 cut(s)	38, 272, 644
HphI	GGTGA	4 cut(s)	52, 322, 502, 748
Hpy166II	GTNNAC	5 cut(s)	10, 116, 265, 348, 364
Hpy188I	TCNGA	7 cut(s)	359, 433, 529, 541, 675, 760, 839
Hpy188III	TCNNGA	4 cut(s)	154, 340, 688, 770
Hpy8I	GTNNAC	5 cut(s)	10, 116, 265, 348, 364
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	33, 346, 400, 584
HpyCH4III	ACNGT	4 cut(s)	150, 258, 795, 844
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	5 cut(s)	182, 587, 710, 728, 807
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	2 cut(s)	110, 528
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	648
HspAI	GCGC	2 cut(s)	303, 648
KasI	GGCGCC	1 cut(s)	647
Kzo9I	GATC	5 cut(s)	354, 628, 680, 774, 778
LmnI	GCTCC	2 cut(s)	211, 281
Lsp1109I	GCAGC	2 cut(s)	712, 819
LweI	GCATC	3 cut(s)	574, 697, 719
MaeI	CTAG	2 cut(s)	392, 770
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	2 cut(s)	460, 490
MalI	GATC	5 cut(s)	356, 630, 682, 776, 780
MboI	GATC	5 cut(s)	354, 628, 680, 774, 778
MboII	GAAGA	4 cut(s)	72, 439, 613, 652
MhlI	GDGCHC	2 cut(s)	278, 335
MluCI	AATT	4 cut(s)	124, 193, 544, 573
Mly113I	GGCGCC	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	222, 443
MmeI	TCCRAC	2 cut(s)	306, 411
Mph1103I	ATGCAT	1 cut(s)	712
MseI	TTAA	3 cut(s)	62, 140, 399
MslI	CAYNNNNRTG	2 cut(s)	338, 488
MspI	CCGG	3 cut(s)	38, 272, 644
MspR9I	CCNGG	3 cut(s)	233, 273, 645
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	1 cut(s)	731
NarI	GGCGCC	1 cut(s)	648
NciI	CCSGG	2 cut(s)	273, 645
NdeII	GATC	5 cut(s)	354, 628, 680, 774, 778
NheI	GCTAGC	1 cut(s)	391
NlaIV	GGNNCC	5 cut(s)	36, 207, 277, 334, 649
NmeAIII	GCCGAG	2 cut(s)	276, 445
NmuCI	GTSAC	1 cut(s)	490
NsiI	ATGCAT	1 cut(s)	712
OliI	CACNNNNGTG	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	302, 727, 809, 827
Ple19I	CGATCG	2 cut(s)	357, 781
PleI	GAGTC	2 cut(s)	222, 442
PluTI	GGCGCC	1 cut(s)	651
PpsI	GAGTC	2 cut(s)	222, 442
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	5 cut(s)	36, 207, 277, 334, 649
PspPI	GGNCC	4 cut(s)	35, 116, 467, 514
PstI	CTGCAG	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	725
PvuI	CGATCG	2 cut(s)	357, 781
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	338, 488
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	62, 140, 399
SatI	GCNGC	4 cut(s)	301, 726, 808, 826
Sau3AI	GATC	5 cut(s)	354, 628, 680, 774, 778
Sau96I	GGNCC	4 cut(s)	35, 116, 467, 514
SchI	GAGTC	2 cut(s)	222, 443
ScrFI	CCNGG	3 cut(s)	233, 273, 645
SduI	GDGCHC	2 cut(s)	278, 335
SfaNI	GCATC	3 cut(s)	574, 697, 719
SfcI	CTRYAG	1 cut(s)	805
SfoI	GGCGCC	1 cut(s)	649
SinI	GGWCC	2 cut(s)	116, 467
SmiMI	CAYNNNNRTG	2 cut(s)	338, 488
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	4 cut(s)	124, 193, 544, 573
SsiI	CCGC	5 cut(s)	20, 300, 417, 734, 826
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	392, 770
StyD4I	CCNGG	3 cut(s)	231, 271, 643
TaaI	ACNGT	4 cut(s)	150, 258, 795, 844
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	9, 237, 777
TaqII	GACCGA	1 cut(s)	133
TasI	AATT	4 cut(s)	124, 193, 544, 573
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	2 cut(s)	303, 828
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	3 cut(s)	62, 140, 399
Tru9I	TTAA	3 cut(s)	62, 140, 399
TscAI	CASTG	4 cut(s)	118, 250, 513, 586
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	725, 807
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	472, 601
TspGWI	ACGGA	4 cut(s)	250, 427, 459, 703
TspRI	CASTG	4 cut(s)	118, 250, 513, 586
VpaK11BI	GGWCC	2 cut(s)	116, 467
XapI	RAATTY	1 cut(s)	573
XbaI	TCTAGA	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	2 cut(s)	392, 770
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.