Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

16860687 .. 16862799

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCACAATCAGTCACCGGAATCCAAATTGGAGGGATGTCGTTTCCTCCCTCCGTCAAGCCACCCGGCTCCGGCAATACCTTTTTCCTCGGCGGCGCAGGGGTGAGGGGGATGGAGATACAGGGGAATTTCGTGAAGTTCACGGCGATCGGAGTCTACTTGGAGGATAAGGCCGTGCCGGCGCTTGCCGTTAAGTGGAAGGGCAAGACGGCCGAGGAGTTGACAGAGTCGGTTGAGTTCTTCAGGGAGATCGTTACAGGTCCTTTTGAGAAATTCACACAAGTGACAATGATACTACCGCTGACGGGCCAGCAATACTCCGAGAAGGTTTCAGAGAATTGTGTTGCCATTTGGAAAAAGTTTGGAATATACACTGATGCAGAAGCGAAAGCCATTGAAAAGTTCATAGAGGTCTTCAAAGATCAGACCTTCCCACCCGGCGCTTCAATTCTCTTCACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTGCATACCCGAAGTTGGGAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAATTATTGGGAAGCAAGGTGTTTCTCCTGAAGCAAGGAAAAGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAATGATCATTGTGTGGCCGGAAATGGGAAAGTGGACGAGTGCACAAAGGAAGCAGAAGTCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

238

Amino Acids

25.49

Weight (kDa)

5.3

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	12 - 212	1e-104	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	93, 299, 527
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	210, 660
AcsI	RAATTY	2 cut(s)	127, 272
AcuI	CTGAAG	2 cut(s)	226, 618
AfiI	CCNNNNNNNGG	6 cut(s)	71, 195, 305, 518, 519, 669
AgsI	TTSAA	5 cut(s)	398, 418, 447, 536, 640
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	1 cut(s)	544
AluI	AGCT	1 cut(s)	544
Alw21I	GWGCWC	1 cut(s)	689
Alw44I	GTGCAC	1 cut(s)	685
AlwI	GGATC	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	171, 210, 307, 660
ApaLI	GTGCAC	1 cut(s)	685
ApoI	RAATTY	2 cut(s)	127, 272
AspLEI	GCGC	3 cut(s)	98, 184, 443
AspS9I	GGNCC	2 cut(s)	260, 307
AsuC2I	CCSGG	2 cut(s)	66, 438
AsuHPI	GGTGA	4 cut(s)	7, 115, 456, 541
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	689
BccI	CCATC	2 cut(s)	106, 494
BceAI	ACGGC	4 cut(s)	158, 159, 173, 225
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	2 cut(s)	66, 438
BfoI	RGCGCY	2 cut(s)	185, 444
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	66, 438
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	260, 307
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	66, 438
BmsI	GCATC	1 cut(s)	367
BpiI	GAAGAC	1 cut(s)	406
BpuMI	CCSGG	2 cut(s)	66, 438
BsaJI	CCNNGG	2 cut(s)	88, 213
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 195, 305, 518, 519, 669
Bse118I	RCCGGY	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	88, 213
BseGI	GGATG	2 cut(s)	42, 117
BseLI	CCNNNNNNNGG	6 cut(s)	71, 195, 305, 518, 519, 669
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	689
BseX3I	CGGCCG	1 cut(s)	210
Bsh1285I	CGRYCG	2 cut(s)	150, 213
BshFI	GGCC	4 cut(s)	173, 212, 309, 662
BsiEI	CGRYCG	2 cut(s)	150, 213
BsiHKAI	GWGCWC	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	6 cut(s)	18, 66, 72, 179, 438, 663
BslI	CCNNNNNNNGG	6 cut(s)	71, 195, 305, 518, 519, 669
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	173, 212, 309, 662
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	5 cut(s)	147, 249, 421, 473, 649
BspACI	CCGC	3 cut(s)	93, 299, 527
BspANI	GGCC	4 cut(s)	173, 212, 309, 662
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	88, 213
BssMI	GATC	5 cut(s)	147, 249, 421, 473, 649
Bst6I	CTCTTC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	180, 186, 311
BstF5I	GGATG	2 cut(s)	42, 117
BstH2I	RGCGCY	2 cut(s)	185, 444
BstHHI	GCGC	3 cut(s)	98, 184, 443
BstKTI	GATC	5 cut(s)	150, 252, 424, 476, 652
BstMBI	GATC	5 cut(s)	147, 249, 421, 473, 649
BstMCI	CGRYCG	2 cut(s)	150, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	64, 436
BstSLI	GKGCMC	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	173, 212, 309, 662
BtsCI	GGATG	2 cut(s)	42, 117
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	180, 186, 311
CfoI	GCGC	3 cut(s)	98, 184, 443
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	260, 307
CviAII	CATG	1 cut(s)	711
DpnI	GATC	5 cut(s)	149, 251, 423, 475, 651
DpnII	GATC	5 cut(s)	147, 249, 421, 473, 649
EaeI	YGGCCR	2 cut(s)	210, 660
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EclXI	CGGCCG	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	226, 618
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	260
FaeI	CATG	1 cut(s)	714
FaiI	YATR	4 cut(s)	370, 407, 509, 712
FatI	CATG	1 cut(s)	710
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	49, 124
Fsp4HI	GCNGC	1 cut(s)	94
GlaI	GCGC	3 cut(s)	97, 183, 442
GluI	GCNGC	1 cut(s)	94
HaeII	RGCGCY	2 cut(s)	185, 444
HaeIII	GGCC	4 cut(s)	173, 212, 309, 662
HapII	CCGG	6 cut(s)	18, 66, 72, 179, 438, 663
HhaI	GCGC	3 cut(s)	98, 184, 443
Hin1II	CATG	1 cut(s)	714
Hin6I	GCGC	3 cut(s)	96, 182, 441
HinP1I	GCGC	3 cut(s)	96, 182, 441
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	5 cut(s)	21, 153, 227, 554, 566
HpaII	CCGG	6 cut(s)	18, 66, 72, 179, 438, 663
HphI	GGTGA	4 cut(s)	7, 115, 456, 541
Hpy166II	GTNNAC	5 cut(s)	141, 157, 222, 679, 687
Hpy188I	TCNGA	6 cut(s)	152, 322, 334, 426, 553, 631
Hpy188III	TCNNGA	3 cut(s)	133, 563, 596
Hpy8I	GTNNAC	5 cut(s)	141, 157, 222, 679, 687
HpyAV	CCTTC	3 cut(s)	193, 319, 439
HpyCH4V	TGCA	3 cut(s)	380, 507, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	714
HspAI	GCGC	3 cut(s)	96, 182, 441
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	147, 249, 421, 473, 649
LmnI	GCTCC	1 cut(s)	74
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	3 cut(s)	13, 253, 283
MalI	GATC	5 cut(s)	149, 251, 423, 475, 651
MboI	GATC	5 cut(s)	147, 249, 421, 473, 649
MboII	GAAGA	3 cut(s)	232, 406, 445
MhlI	GDGCHC	1 cut(s)	689
MluCI	AATT	7 cut(s)	27, 127, 272, 337, 447, 570, 632
MlyI	GAGTC	4 cut(s)	162, 236, 563, 575
MnlI	CCTC	8 cut(s)	26, 57, 61, 98, 99, 157, 208, 403
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	6 cut(s)	18, 66, 72, 179, 438, 663
MspR9I	CCNGG	2 cut(s)	66, 438
Mva1269I	GAATGC	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	179
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	66, 438
NdeII	GATC	5 cut(s)	147, 249, 421, 473, 649
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	714
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	2 cut(s)	69, 238
NmuCI	GTSAC	2 cut(s)	13, 283
OliI	CACNNNNGTG	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	563
PctI	GAATGC	1 cut(s)	529
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	21
PflFI	GACNNNGTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	95
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	4 cut(s)	161, 235, 562, 574
PpsI	GAGTC	4 cut(s)	161, 235, 562, 574
PpuMI	RGGWCCY	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	260, 307
PspPPI	RGGWCCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	226
PvuI	CGATCG	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	5 cut(s)	147, 249, 421, 473, 649
Sau96I	GGNCC	2 cut(s)	260, 307
SchI	GAGTC	4 cut(s)	162, 236, 563, 575
ScrFI	CCNGG	2 cut(s)	66, 438
SduI	GDGCHC	1 cut(s)	689
SetI	ASST	7 cut(s)	83, 262, 330, 414, 431, 546, 589
SfaNI	GCATC	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	563
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	7 cut(s)	27, 127, 272, 337, 447, 570, 632
SsiI	CCGC	3 cut(s)	93, 299, 527
StyD4I	CCNGG	2 cut(s)	64, 436
TaqI	TCGA	1 cut(s)	564
TasI	AATT	7 cut(s)	27, 127, 272, 337, 447, 570, 632
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	2 cut(s)	13, 283
Tsp45I	GTSAC	2 cut(s)	13, 283
TspDTI	ATGAA	1 cut(s)	394
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	685
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	127, 272
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.