Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

26733159 .. 26735913

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTCCACCACCATCGCTCGCTGGACTCCAGGTCGGAGCCACTGCGTTTCCACCGTCCGTCAAACCTCCGGGATCCTCCAACACTTTGTTCCTCGGTGGCGCAGGGATGAGGGGGTTGGAGATTCAGGGGAACTTCGTGAAGGTCACGGCGATCGGAGTGTACTTGGAGGATAACGCCGTGCCTCTGCTCGCCGTTAAGTGGAAGGGTAAGACCGCCGAGGAGTTGTCGGAGTCCGTTGAGTTCTTCAGGGACATAGTTACAGGTCCGTTTGAGAAGTTCATTCAGGTGACAATGATATTGCCACTGACGGGCCAGCAATACTCTGAGAAAGTTTCGGAGAATTGTGTATTCTTTTGGAAGTCAGTGGGAATTTACACTGATCTAGAAGGCAAAGCCATTGAACAGTTCATTGATGTTTTCAAAGATCAAAACTTCCCACCGGGTGCCTCTATTCTATTCACACAATCTCCTAAAGGATCACTCACGATTAGCTTCTCCAAAGATGCATCCATGCCGGAAGCTACAAATGCGGTGATAGAAAACAAACTACTTTCCGAGACAGTTCTAGAGTCTATCGTGGGAAAGCACGGTGTTTCCCCTGCAACAAAGCAAAGTTTGGCCGCGAGGTTATCCCAACTATTGAACGGGTGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

220

Amino Acids

23.47

Weight (kDa)

5.55

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	13 - 214	1.7e-103	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	626
AciI	CCGC	3 cut(s)	216, 533, 624
AclWI	GGATC	3 cut(s)	69, 82, 487
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	201, 311
AgsI	TTSAA	3 cut(s)	404, 424, 646
AhdI	GACNNNNNGTC	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	495, 524
AluI	AGCT	2 cut(s)	495, 524
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	69, 82, 487
AoxI	GGCC	2 cut(s)	313, 621
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	266, 313
AsuC2I	CCSGG	2 cut(s)	72, 444
AsuHPI	GGTGA	2 cut(s)	301, 547
AvaII	GGWCC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	446
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	3 cut(s)	164, 165, 179
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	2 cut(s)	72, 444
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	386, 569
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	3 cut(s)	32, 72, 444
Bme18I	GGWCC	1 cut(s)	266
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	266, 313
BmiI	GGNNCC	4 cut(s)	6, 40, 76, 448
BmrFI	CCNGG	3 cut(s)	32, 72, 444
BmsI	GCATC	2 cut(s)	496, 518
BpmI	CTGGAG	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	72, 444
BsaJI	CCNNGG	2 cut(s)	94, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 311
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	94, 219
BseGI	GGATG	2 cut(s)	114, 509
BseLI	CCNNNNNNNGG	2 cut(s)	201, 311
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	315, 623
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	156
BsiSI	CCGG	3 cut(s)	71, 443, 518
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	201, 311
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	315, 623
Bsp143I	GATC	5 cut(s)	74, 153, 382, 427, 479
BspACI	CCGC	3 cut(s)	216, 533, 624
BspANI	GGCC	2 cut(s)	315, 623
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	4 cut(s)	6, 40, 76, 448
BspPI	GGATC	3 cut(s)	69, 82, 487
BspT107I	GGYRCC	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	94, 219
BssMI	GATC	5 cut(s)	74, 153, 382, 427, 479
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	57, 408, 565, 593
BstC8I	GCNNGC	3 cut(s)	21, 192, 317
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	114, 509
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	5 cut(s)	77, 156, 385, 430, 482
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	5 cut(s)	74, 153, 382, 427, 479
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	3 cut(s)	30, 70, 442
BstUI	CGCG	1 cut(s)	626
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	315, 623
BtsCI	GGATG	2 cut(s)	114, 509
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	4 cut(s)	42, 305, 372, 378
Cac8I	GCNNGC	3 cut(s)	21, 192, 317
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	266, 313
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	514
CviJI	RGCY	7 cut(s)	5, 41, 315, 398, 495, 524, 623
CviKI_1	RGCY	7 cut(s)	5, 41, 315, 398, 495, 524, 623
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	76, 155, 384, 429, 481
DpnII	GATC	5 cut(s)	74, 153, 382, 427, 479
DraIII	CACNNNGTG	1 cut(s)	446
DriI	GACNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	621
Eam1105I	GACNNNNNGTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	1 cut(s)	517
FaiI	YATR	2 cut(s)	257, 515
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	121, 496
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	2 cut(s)	386, 569
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	315, 623
HapII	CCGG	3 cut(s)	71, 443, 518
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	517
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	4 cut(s)	27, 124, 233, 572
HpaII	CCGG	3 cut(s)	71, 443, 518
HphI	GGTGA	2 cut(s)	301, 547
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	6 cut(s)	38, 158, 232, 328, 340, 559
Hpy188III	TCNNGA	4 cut(s)	139, 386, 487, 569
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	136, 199, 383
HpyCH4III	ACNGT	4 cut(s)	57, 408, 565, 593
HpyCH4V	TGCA	2 cut(s)	509, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	517
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	74, 153, 382, 427, 479
LmnI	GCTCC	2 cut(s)	10, 38
LweI	GCATC	2 cut(s)	496, 518
MaeI	CTAG	2 cut(s)	386, 569
MaeIII	GTNAC	3 cut(s)	145, 259, 289
MalI	GATC	5 cut(s)	76, 155, 384, 429, 481
MboI	GATC	5 cut(s)	74, 153, 382, 427, 479
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	2 cut(s)	343, 372
MlyI	GAGTC	3 cut(s)	21, 242, 581
MmeI	TCCRAC	4 cut(s)	16, 99, 105, 210
MnlI	CCTC	9 cut(s)	78, 88, 104, 105, 163, 195, 214, 460, 621
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	3 cut(s)	71, 443, 518
MspR9I	CCNGG	3 cut(s)	32, 72, 444
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	2 cut(s)	72, 444
NdeII	GATC	5 cut(s)	74, 153, 382, 427, 479
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	4 cut(s)	6, 40, 76, 448
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	145, 289
NsiI	ATGCAT	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	625
Ple19I	CGATCG	1 cut(s)	156
PleI	GAGTC	3 cut(s)	21, 241, 580
PpsI	GAGTC	3 cut(s)	21, 241, 580
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	6, 40, 76, 448
PspPI	GGNCC	2 cut(s)	266, 313
PsuI	RGATCY	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	5 cut(s)	74, 153, 382, 427, 479
Sau96I	GGNCC	2 cut(s)	266, 313
SchI	GAGTC	3 cut(s)	21, 242, 581
ScrFI	CCNGG	3 cut(s)	32, 72, 444
SetI	ASST	8 cut(s)	36, 70, 147, 268, 291, 497, 526, 632
SfaNI	GCATC	2 cut(s)	496, 518
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	343, 372
SsiI	CCGC	3 cut(s)	216, 533, 624
SspMI	CTAG	2 cut(s)	386, 569
StyD4I	CCNGG	3 cut(s)	30, 70, 442
TaaI	ACNGT	4 cut(s)	57, 408, 565, 593
TasI	AATT	2 cut(s)	343, 372
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	626
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	4 cut(s)	49, 312, 372, 385
TseFI	GTSAC	2 cut(s)	145, 289
Tsp45I	GTSAC	2 cut(s)	145, 289
TspDTI	ATGAA	2 cut(s)	271, 400
TspGWI	ACGGA	3 cut(s)	49, 226, 258
TspRI	CASTG	4 cut(s)	49, 312, 372, 385
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	372
XbaI	TCTAGA	2 cut(s)	385, 568
XspI	CTAG	2 cut(s)	386, 569
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.