Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Forward (+)

12294824 .. 12296520

Gene Structure 1697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTCAATCAGTTACCGGAATTCAGGTCGAAGCGACCACGTTTCCTCCCGCCGTCAAGCCTCCGGGATCCGCCAACACTCTGTTCCTCGCCGGCGCAGGGGGCTGGAGATACAGGGGGAATTTCGTCAAGTTTACGGCGATAGGAGTCTACTTGGAGGATAAGGCCGTGCCGGCGCTCGCCGTTAAGTGGAAGGGTAAGACGGCCGAGGAGTTGACGGAGTCCGTTGAGTTCTTCAGGGAGATCGTTACAGGTCCATTTGAGAAATTCACACAGGTGACGATGATACTACCATTGACTGGCCAGCAATACTCGGAGAAGGTTTCAGAGAATTGTGTTGCCATTTGGAAAAAAATTGGAATTTACACTGATGCAGAAGCCAAAGCTATTGAAAAGTTTACGGAGGTCTTCAAAGATCAGACCTTCCCACCTGGTGCTTCTATTCTCTTCACACAATCACCAAATGGATCATTGACGATTGGCTTCTCCAAAGATGGTTCCATACCAGCAGTCGGAAATGCGGTGATTGAAAACAAGCTACTTTCAGAGTCAGTTCTCGAGTCAATCATTGGAAAGCAAGGTGTTTCTCCTGAAGCAAGGAAATGTGTGGCTACAAGGCTATCAGAATTGTTGAAAGAGAGTGATGATTGCATGGCCGGAAATGGGAAAGTGGAAGAGTGCACAAAGGAAGCAGAAGTCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

235

Amino Acids

25.32

Weight (kDa)

5.33

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	10 - 210	2.5e-101	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	3 cut(s)	51, 72, 521
AclWI	GGATC	3 cut(s)	63, 76, 475
AcoI	YGGCCR	3 cut(s)	204, 301, 654
AcsI	RAATTY	4 cut(s)	21, 121, 266, 360
AcuI	CTGAAG	2 cut(s)	220, 612
AdeI	CACNNNGTG	1 cut(s)	434
AfiI	CCNNNNNNNGG	5 cut(s)	99, 189, 299, 512, 663
AgsI	TTSAA	4 cut(s)	392, 412, 530, 634
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	386, 538
AluI	AGCT	2 cut(s)	386, 538
Alw21I	GWGCWC	1 cut(s)	683
Alw44I	GTGCAC	1 cut(s)	679
AlwI	GGATC	3 cut(s)	63, 76, 475
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	4 cut(s)	165, 204, 301, 654
ApaLI	GTGCAC	1 cut(s)	679
ApoI	RAATTY	4 cut(s)	21, 121, 266, 360
AspLEI	GCGC	2 cut(s)	98, 178
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	289, 450, 535
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	683
BccI	CCATC	1 cut(s)	488
BceAI	ACGGC	5 cut(s)	38, 152, 153, 167, 219
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	66, 432
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	70, 499
BmrFI	CCNGG	2 cut(s)	66, 432
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	5 cut(s)	99, 189, 299, 512, 663
Bse118I	RCCGGY	2 cut(s)	92, 172
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	5 cut(s)	99, 189, 299, 512, 663
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	4 cut(s)	167, 206, 303, 656
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	683
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	5 cut(s)	18, 65, 93, 173, 657
BslI	CCNNNNNNNGG	5 cut(s)	99, 189, 299, 512, 663
BsnI	GGCC	4 cut(s)	167, 206, 303, 656
BsoBI	CYCGRG	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp143I	GATC	4 cut(s)	68, 243, 415, 467
BspACI	CCGC	3 cut(s)	51, 72, 521
BspANI	GGCC	4 cut(s)	167, 206, 303, 656
BspLI	GGNNCC	2 cut(s)	70, 499
BspPI	GGATC	3 cut(s)	63, 76, 475
BsrFI	RCCGGY	2 cut(s)	92, 172
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	2 cut(s)	92, 172
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	4 cut(s)	68, 243, 415, 467
Bst2UI	CCWGG	1 cut(s)	432
Bst6I	CTCTTC	2 cut(s)	452, 669
BstC8I	GCNNGC	4 cut(s)	94, 174, 180, 305
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	98, 178
BstKTI	GATC	4 cut(s)	71, 246, 418, 470
BstMBI	GATC	4 cut(s)	68, 243, 415, 467
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 173
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	64, 430
BstSLI	GKGCMC	1 cut(s)	683
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	167, 206, 303, 656
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	4 cut(s)	94, 174, 180, 305
CfoI	GCGC	2 cut(s)	98, 178
Cfr10I	RCCGGY	2 cut(s)	92, 172
Cfr13I	GGNCC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	652, 705
DpnI	GATC	4 cut(s)	70, 245, 417, 469
DpnII	GATC	4 cut(s)	68, 243, 415, 467
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	3 cut(s)	204, 301, 654
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	452, 669
EarI	CTCTTC	2 cut(s)	452, 669
EciI	GGCGGA	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	220, 612
Eco88I	CYCGRG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	655, 708
FaiI	YATR	3 cut(s)	503, 653, 706
FatI	CATG	2 cut(s)	651, 704
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	150
GlaI	GCGC	2 cut(s)	97, 177
GsuI	CTGGAG	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	167, 206, 303, 656
HapII	CCGG	5 cut(s)	18, 65, 93, 173, 657
HhaI	GCGC	2 cut(s)	98, 178
Hin1II	CATG	2 cut(s)	655, 708
Hin6I	GCGC	2 cut(s)	96, 176
HinP1I	GCGC	2 cut(s)	96, 176
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	4 cut(s)	147, 221, 548, 560
HpaII	CCGG	5 cut(s)	18, 65, 93, 173, 657
HphI	GGTGA	3 cut(s)	289, 450, 535
Hpy166II	GTNNAC	5 cut(s)	135, 151, 216, 399, 681
Hpy188I	TCNGA	6 cut(s)	316, 328, 420, 515, 547, 625
Hpy188III	TCNNGA	2 cut(s)	557, 590
Hpy8I	GTNNAC	5 cut(s)	135, 151, 216, 399, 681
HpyAV	CCTTC	3 cut(s)	187, 313, 433
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	374, 651, 681
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 173
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	655, 708
HspAI	GCGC	2 cut(s)	96, 176
KroI	GCCGGC	2 cut(s)	92, 172
KroNI	GCCGGC	2 cut(s)	94, 174
Kzo9I	GATC	4 cut(s)	68, 243, 415, 467
LweI	GCATC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	430
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	13, 247, 277
MalI	GATC	4 cut(s)	70, 245, 417, 469
MboI	GATC	4 cut(s)	68, 243, 415, 467
MboII	GAAGA	4 cut(s)	226, 400, 439, 686
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	683
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	7 cut(s)	21, 121, 266, 331, 354, 360, 626
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	4 cut(s)	156, 230, 557, 569
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	57, 72, 98, 151, 202, 397
Mox20I	TGGCCA	1 cut(s)	303
MreI	CGCCGGCG	1 cut(s)	92
MroNI	GCCGGC	2 cut(s)	92, 172
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	5 cut(s)	18, 65, 93, 173, 657
MspR9I	CCNGG	2 cut(s)	66, 432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	102, 173
NaeI	GCCGGC	2 cut(s)	94, 174
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	68, 243, 415, 467
NgoMIV	GCCGGC	2 cut(s)	92, 172
NlaIII	CATG	2 cut(s)	655, 708
NlaIV	GGNNCC	2 cut(s)	70, 499
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	277
OliI	CACNNNNGTG	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	557
PdiI	GCCGGC	2 cut(s)	94, 174
PflFI	GACNNNGTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	64
PleI	GAGTC	4 cut(s)	155, 229, 556, 568
PpsI	GAGTC	4 cut(s)	155, 229, 556, 568
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	70, 499
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	68
PsyI	GACNNNGTC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	4 cut(s)	68, 243, 415, 467
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	4 cut(s)	156, 230, 557, 569
ScrFI	CCNGG	2 cut(s)	66, 432
SduI	GDGCHC	1 cut(s)	683
SexAI	ACCWGGT	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	361
Sfr274I	CTCGAG	1 cut(s)	557
SgrAI	CRCCGGYG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	7 cut(s)	21, 121, 266, 331, 354, 360, 626
SsiI	CCGC	3 cut(s)	51, 72, 521
StyD4I	CCNGG	2 cut(s)	64, 430
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	30, 558
TasI	AATT	7 cut(s)	21, 121, 266, 331, 354, 360, 626
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspGWI	ACGGA	3 cut(s)	214, 233, 416
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	4 cut(s)	21, 121, 266, 360
XhoI	CTCGAG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.