Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001688.1

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Forward (+)

42217 .. 44578

Gene Structure 2362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001688.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggctcaatcagttaccggaattcaggtcgaagcgaccacgtttcctcccgccgtcaagcctccgggctccgccaacactctgttcctcgccggcgcaggggcgagggggctggagatacaggggaatttcgttaagttcacggcgattggagtctacttggaggacaaggccgtgccggcgctagccgttaagtggaagggtaagacggccgaggagttgacggagtccgttgaattcttcagggagatcgttacagttaccggaattcaggtcgaagcgaccacatttcctcccgccgtcaagcctccgggctccgccaacactctgttcctcgccggcgcaggggcgagggggctggagatacaggggaatttcgttaagttcacggcgattggagtctacttggaggacaaggccgtgccggcgctagccgttaagtggaagggtaagacggccgaggagttgacggagtccgttgaattcttcagggagatcgttacaggtccatttgagaaattcacacaggtgacgatgatactgccattgactggccagcaatactcggagaaggtttcagagaattgtgttgccatttggaaaaaatttggaatttatactgatgcagaagccaaagccattgaaaagtttgtggaggtcttcaaagatcagaccttcccacctggtgcttctattctcttcacacaatcaccaaacggatcattgacgattggcttctccaaagatggttccataccagcagttggaaatgcggtgattgaaaacaagctactttcagagtcagttctcgagtcaatcattggaaagcaaggtgtttctcctgaagcaaggaaatgtgtggctacaaggctatcagaattgttggaagagagtgatgattgcgtggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

303

Amino Acids

32.38

Weight (kDa)

5.01

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	551, 764
AccI	GTMKAC	2 cut(s)	156, 402
AciI	CCGC	5 cut(s)	51, 72, 297, 318, 773
AclWI	GGATC	1 cut(s)	727
AcoI	YGGCCR	3 cut(s)	210, 456, 553
AcsI	RAATTY	9 cut(s)	21, 127, 236, 267, 373, 482, 518, 605, 612
AcuI	CTGAAG	3 cut(s)	226, 472, 864
AdeI	CACNNNGTG	1 cut(s)	686
AfiI	CCNNNNNNNGG	6 cut(s)	99, 195, 345, 441, 551, 764
AgsI	TTSAA	5 cut(s)	236, 482, 644, 664, 782
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	4 cut(s)	68, 100, 314, 346
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	1 cut(s)	790
AluI	AGCT	1 cut(s)	790
AlwI	GGATC	1 cut(s)	727
Ama87I	CYCGRG	1 cut(s)	809
AoxI	GGCC	6 cut(s)	171, 210, 417, 456, 553, 906
ApoI	RAATTY	9 cut(s)	21, 127, 236, 267, 373, 482, 518, 605, 612
AspLEI	GCGC	4 cut(s)	98, 184, 344, 430
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	2 cut(s)	66, 312
AsuHPI	GGTGA	3 cut(s)	541, 702, 787
AsuNHI	GCTAGC	2 cut(s)	184, 430
AvaI	CYCGRG	1 cut(s)	809
AvaII	GGWCC	1 cut(s)	506
BalI	TGGCCA	1 cut(s)	555
BanII	GRGCYC	2 cut(s)	71, 317
BbsI	GAAGAC	1 cut(s)	652
BccI	CCATC	1 cut(s)	740
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	2 cut(s)	66, 312
BfaI	CTAG	2 cut(s)	185, 431
BfoI	RGCGCY	2 cut(s)	185, 431
BglI	GCCNNNNNGGC	2 cut(s)	179, 425
Bme1390I	CCNGG	3 cut(s)	66, 312, 684
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	3 cut(s)	70, 316, 751
BmrFI	CCNGG	3 cut(s)	66, 312, 684
BmsI	GCATC	1 cut(s)	613
BmtI	GCTAGC	2 cut(s)	188, 434
BpiI	GAAGAC	1 cut(s)	652
BpmI	CTGGAG	2 cut(s)	134, 380
BpuMI	CCSGG	2 cut(s)	66, 312
BsaJI	CCNNGG	2 cut(s)	213, 459
BsaWI	WCCGGW	2 cut(s)	17, 263
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 277, 307
Bsc4I	CCNNNNNNNGG	6 cut(s)	99, 195, 345, 441, 551, 764
Bse118I	RCCGGY	4 cut(s)	92, 178, 338, 424
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	213, 459
BseLI	CCNNNNNNNGG	6 cut(s)	99, 195, 345, 441, 551, 764
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	2 cut(s)	230, 476
BseX3I	CGGCCG	2 cut(s)	210, 456
Bsh1285I	CGRYCG	2 cut(s)	213, 459
BshFI	GGCC	6 cut(s)	173, 212, 419, 458, 555, 908
BsiEI	CGRYCG	2 cut(s)	213, 459
BsiHKCI	CYCGRG	1 cut(s)	809
BsiSI	CCGG	8 cut(s)	18, 65, 93, 179, 264, 311, 339, 425
BslI	CCNNNNNNNGG	6 cut(s)	99, 195, 345, 441, 551, 764
BsnI	GGCC	6 cut(s)	173, 212, 419, 458, 555, 908
BsoBI	CYCGRG	1 cut(s)	809
Bsp1286I	GDGCHC	2 cut(s)	71, 317
Bsp143I	GATC	4 cut(s)	249, 495, 667, 719
BspACI	CCGC	5 cut(s)	51, 72, 297, 318, 773
BspANI	GGCC	6 cut(s)	173, 212, 419, 458, 555, 908
BspLI	GGNNCC	3 cut(s)	70, 316, 751
BspOI	GCTAGC	2 cut(s)	188, 434
BspPI	GGATC	1 cut(s)	727
BsrFI	RCCGGY	4 cut(s)	92, 178, 338, 424
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	4 cut(s)	92, 178, 338, 424
BssECI	CCNNGG	2 cut(s)	213, 459
BssMI	GATC	4 cut(s)	249, 495, 667, 719
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	704, 882
BstC8I	GCNNGC	7 cut(s)	94, 180, 186, 340, 426, 432, 557
BstH2I	RGCGCY	2 cut(s)	185, 431
BstHHI	GCGC	4 cut(s)	98, 184, 344, 430
BstKTI	GATC	4 cut(s)	252, 498, 670, 722
BstMBI	GATC	4 cut(s)	249, 495, 667, 719
BstMCI	CGRYCG	2 cut(s)	213, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 425
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	3 cut(s)	64, 310, 682
BstV2I	GAAGAC	1 cut(s)	652
BstZI	CGGCCG	2 cut(s)	210, 456
BsuRI	GGCC	6 cut(s)	173, 212, 419, 458, 555, 908
Cac8I	GCNNGC	7 cut(s)	94, 180, 186, 340, 426, 432, 557
CfoI	GCGC	4 cut(s)	98, 184, 344, 430
Cfr10I	RCCGGY	4 cut(s)	92, 178, 338, 424
Cfr13I	GGNCC	1 cut(s)	506
CsiI	ACCWGGT	1 cut(s)	682
DpnI	GATC	4 cut(s)	251, 497, 669, 721
DpnII	GATC	4 cut(s)	249, 495, 667, 719
DraIII	CACNNNGTG	1 cut(s)	686
EaeI	YGGCCR	3 cut(s)	210, 456, 553
EagI	CGGCCG	2 cut(s)	210, 456
Eam1104I	CTCTTC	2 cut(s)	704, 882
EarI	CTCTTC	2 cut(s)	704, 882
EciI	GGCGGA	2 cut(s)	61, 307
EclXI	CGGCCG	2 cut(s)	210, 456
Eco24I	GRGCYC	2 cut(s)	71, 317
Eco47I	GGWCC	1 cut(s)	506
Eco52I	CGGCCG	2 cut(s)	210, 456
Eco57I	CTGAAG	3 cut(s)	226, 472, 864
Eco88I	CYCGRG	1 cut(s)	809
EcoRI	GAATTC	4 cut(s)	21, 236, 267, 482
EcoRII	CCWGG	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	71, 317
FaiI	YATR	2 cut(s)	618, 755
FauI	CCCGC	2 cut(s)	58, 304
FblI	GTMKAC	2 cut(s)	156, 402
FriOI	GRGCYC	2 cut(s)	71, 317
FspBI	CTAG	2 cut(s)	185, 431
GlaI	GCGC	4 cut(s)	97, 183, 343, 429
GsuI	CTGGAG	2 cut(s)	134, 380
HaeII	RGCGCY	2 cut(s)	185, 431
HaeIII	GGCC	6 cut(s)	173, 212, 419, 458, 555, 908
HapII	CCGG	8 cut(s)	18, 65, 93, 179, 264, 311, 339, 425
HhaI	GCGC	4 cut(s)	98, 184, 344, 430
Hin6I	GCGC	4 cut(s)	96, 182, 342, 428
HinP1I	GCGC	4 cut(s)	96, 182, 342, 428
HincII	GTYRAC	2 cut(s)	222, 468
HindII	GTYRAC	2 cut(s)	222, 468
HinfI	GANTC	6 cut(s)	153, 227, 399, 473, 800, 812
HpaII	CCGG	8 cut(s)	18, 65, 93, 179, 264, 311, 339, 425
HphI	GGTGA	3 cut(s)	541, 702, 787
Hpy166II	GTNNAC	6 cut(s)	141, 157, 222, 387, 403, 468
Hpy188I	TCNGA	5 cut(s)	568, 580, 672, 799, 877
Hpy188III	TCNNGA	2 cut(s)	809, 842
Hpy8I	GTNNAC	6 cut(s)	141, 157, 222, 387, 403, 468
HpyAV	CCTTC	4 cut(s)	193, 439, 565, 685
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 425
HpySE526I	ACGT	1 cut(s)	41
HspAI	GCGC	4 cut(s)	96, 182, 342, 428
KroI	GCCGGC	4 cut(s)	92, 178, 338, 424
KroNI	GCCGGC	4 cut(s)	94, 180, 340, 426
Kzo9I	GATC	4 cut(s)	249, 495, 667, 719
LmnI	GCTCC	2 cut(s)	74, 320
LweI	GCATC	1 cut(s)	613
MabI	ACCWGGT	1 cut(s)	682
MaeI	CTAG	2 cut(s)	185, 431
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	5 cut(s)	13, 253, 259, 499, 529
MalI	GATC	4 cut(s)	251, 497, 669, 721
MboI	GATC	4 cut(s)	249, 495, 667, 719
MboII	GAAGA	5 cut(s)	232, 478, 652, 691, 899
MhlI	GDGCHC	2 cut(s)	71, 317
MlsI	TGGCCA	1 cut(s)	555
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	6 cut(s)	162, 236, 408, 482, 809, 821
MmeI	TCCRAC	2 cut(s)	745, 864
Mox20I	TGGCCA	1 cut(s)	555
MreI	CGCCGGCG	2 cut(s)	92, 338
MroNI	GCCGGC	4 cut(s)	92, 178, 338, 424
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	4 cut(s)	135, 192, 381, 438
MslI	CAYNNNNRTG	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	8 cut(s)	18, 65, 93, 179, 264, 311, 339, 425
MspR9I	CCNGG	3 cut(s)	66, 312, 684
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	179, 425
NaeI	GCCGGC	4 cut(s)	94, 180, 340, 426
NciI	CCSGG	2 cut(s)	66, 312
NdeII	GATC	4 cut(s)	249, 495, 667, 719
NgoMIV	GCCGGC	4 cut(s)	92, 178, 338, 424
NheI	GCTAGC	2 cut(s)	184, 430
NlaIV	GGNNCC	3 cut(s)	70, 316, 751
NmeAIII	GCCGAG	2 cut(s)	238, 484
NmuCI	GTSAC	1 cut(s)	529
OliI	CACNNNNGTG	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	809
PdiI	GCCGGC	4 cut(s)	94, 180, 340, 426
PflFI	GACNNNGTC	2 cut(s)	226, 472
PflMI	CCANNNNNTGG	2 cut(s)	551, 764
PleI	GAGTC	6 cut(s)	161, 235, 407, 481, 808, 820
PpsI	GAGTC	6 cut(s)	161, 235, 407, 481, 808, 820
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	70, 316, 751
PspPI	GGNCC	1 cut(s)	506
PsyI	GACNNNGTC	2 cut(s)	226, 472
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	135, 192, 381, 438
Sau3AI	GATC	4 cut(s)	249, 495, 667, 719
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	6 cut(s)	162, 236, 408, 482, 809, 821
ScrFI	CCNGG	3 cut(s)	66, 312, 684
SduI	GDGCHC	2 cut(s)	71, 317
SexAI	ACCWGGT	1 cut(s)	682
SfaNI	GCATC	1 cut(s)	613
Sfr274I	CTCGAG	1 cut(s)	809
SgrAI	CRCCGGYG	2 cut(s)	92, 338
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
SsiI	CCGC	5 cut(s)	51, 72, 297, 318, 773
SspMI	CTAG	2 cut(s)	185, 431
StyD4I	CCNGG	3 cut(s)	64, 310, 682
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	30, 276, 810
Tru1I	TTAA	4 cut(s)	135, 192, 381, 438
Tru9I	TTAA	4 cut(s)	135, 192, 381, 438
TseFI	GTSAC	1 cut(s)	529
Tsp45I	GTSAC	1 cut(s)	529
TspGWI	ACGGA	5 cut(s)	220, 239, 466, 485, 732
Tth111I	GACNNNGTC	2 cut(s)	226, 472
Van91I	CCANNNNNTGG	2 cut(s)	551, 764
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	9 cut(s)	21, 127, 236, 267, 373, 482, 518, 605, 612
XhoI	CTCGAG	1 cut(s)	809
XmiI	GTMKAC	2 cut(s)	156, 402
XspI	CTAG	2 cut(s)	185, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.