Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

26739258 .. 26740051

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1186400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGCAATTTTATCCTATTTTATTTTTGTCAAATGCGTGACCTCAAAGTTTTTGTTAGCACGCTTGACCCCAAATTGGGGCTATCTAGACCATTTGAGAAATTCACACAGGTGACGTTCATACAACACTTAACTGGCAGGCAATACTCAGAGAAGGTTGCAGAGAATTGCATTGCCTCTTGGAAATTAGCCGGATTTTACAGCGGGGAAGAAGCCAAAGCCATTGAAACGTTCCTAGAGGTCTTCAAAGATCAAACCTTTCCTCATGGCTCCTCTGTCTCTTTCACTCAATCACCACCGCATGGCTCATCAACGATTAGCTTCTCGAAAGATGAATCCATCCCACAAGTGGGGAATGAGGTGATGGTGAATAAACTACTCGGAGAGGCAATTCTGGAGTCAATCATCGGAAAGCACGGTGTTTCGCCTGCGGCAAGGCAACGCTTGCCCCAGAGGTTATCGGATTTGTTGACTGAAAAGCCTGAACTGTTGGGGGTTGGAAAGCCAACAAACCAAGTTGAGGTTGGGGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0010033 GO:0010224 GO:0012505 GO:0016020 GO:0016853 GO:0016872 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042221 GO:0042406 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

179

Amino Acids

19.7

Weight (kDa)

6.43

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	30 - 156	1.7e-48	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	3 cut(s)	204, 299, 431
AclI	AACGTT	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	7 cut(s)	76, 77, 78, 302, 349, 350, 520
AgsI	TTSAA	2 cut(s)	227, 247
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	101
AsuHPI	GGTGA	4 cut(s)	124, 285, 373, 379
BbsI	GAAGAC	1 cut(s)	235
BccI	CCATC	2 cut(s)	347, 358
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	2 cut(s)	87, 236
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 77, 78, 302, 349, 350, 520
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	7 cut(s)	76, 77, 78, 302, 349, 350, 520
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	7 cut(s)	76, 77, 78, 302, 349, 350, 520
BsmAI	GTCTC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	3 cut(s)	204, 299, 431
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	419, 489
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstC8I	GCNNGC	4 cut(s)	62, 140, 429, 446
BstDEI	CTNAG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	1 cut(s)	253
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	339
Cac8I	GCNNGC	4 cut(s)	62, 140, 429, 446
CviAII	CATG	2 cut(s)	266, 302
CviJI	RGCY	9 cut(s)	82, 191, 215, 221, 270, 306, 321, 481, 505
CviKI_1	RGCY	9 cut(s)	82, 191, 215, 221, 270, 306, 321, 481, 505
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
FaeI	CATG	2 cut(s)	269, 305
FaiI	YATR	3 cut(s)	122, 267, 303
FatI	CATG	2 cut(s)	265, 301
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	87, 236
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	416
HapII	CCGG	1 cut(s)	192
Hin1II	CATG	2 cut(s)	269, 305
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	2 cut(s)	335, 398
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	4 cut(s)	124, 285, 373, 379
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	151, 383, 410, 463
Hpy188III	TCNNGA	3 cut(s)	87, 325, 395
Hpy8I	GTNNAC	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	419, 489
HpyCH4IV	ACGT	2 cut(s)	116, 230
HpyCH4V	TGCA	2 cut(s)	161, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	2 cut(s)	116, 230
Hsp92II	CATG	2 cut(s)	269, 305
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	95, 120, 124, 205, 380, 441, 464, 495
MaeI	CTAG	2 cut(s)	87, 236
MaeII	ACGT	2 cut(s)	116, 230
MaeIII	GTNAC	2 cut(s)	38, 112
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	221, 235
MluCI	AATT	6 cut(s)	7, 74, 101, 166, 185, 390
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	9 cut(s)	53, 187, 232, 273, 283, 352, 379, 447, 514
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	2 cut(s)	269, 305
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	2 cut(s)	38, 112
OliI	CACNNNNGTG	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp1406I	AACGTT	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	6 cut(s)	7, 74, 101, 166, 185, 390
SsiI	CCGC	3 cut(s)	204, 299, 431
SspMI	CTAG	2 cut(s)	87, 236
TaaI	ACNGT	2 cut(s)	419, 489
TaiI	ACGT	2 cut(s)	119, 233
TaqI	TCGA	1 cut(s)	326
TasI	AATT	6 cut(s)	7, 74, 101, 166, 185, 390
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	38, 112
Tsp45I	GTSAC	2 cut(s)	38, 112
TspDTI	ATGAA	2 cut(s)	109, 348
Van91I	CCANNNNNTGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 521
XspI	CTAG	2 cut(s)	87, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.