Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

25223989 .. 25225403

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCACTACCAAATCTCACCGGACTTCAGATCGAGGCGACGTCGTTTCCACCGTCAGTCAAACCCCCCGGCTCCGCCAACACTCTGTTCCTCGGCGGCGCAGGGGTGAGGGGGCTGGAGATTCAGGGGAACTTCGTGAAGTTCACGGCGATTGGCGTGTACTTGGAGGATAAGGCCGTGCCTCTGCTTGCCGTTAAGTGGAAAGGCAAGACCGCCCAGGAGCTGACGGAGTCCGTTGAGTTCCTCAGAGAGATCGTTACAGGTCCATTTGAGAAATTCACACAGGTGACAACGATACTGCCACTAACCGGCCAGCAATACTCAGAGAAGGTTTCGGAGAATTGCGTTGCGATTTGGAAATCAATCGGAATTTACACTGATGCAGAAGCCAAGGCCATTGAGAAGTTCCTTGAGGTCTTCAAGGATCAAAACTTCCCACCTGGCGCCTCTATCCTTTTCACACAATCTCCCAATGGATCATTAACGATAAGCTTCTCCAAAGATGCATCCGTACCAGAAGCTGGGAACGTGGTGATCGAAAATAAACTGCTTTCGGAGGCAGTTCTAGAGTCGATCATAGGAAAGCACGGCGTTTCTCCTGGAGCAAGGCAGAGTGTAGCTGCGAGGTTATCTGAATTGTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

217

Amino Acids

23.1

Weight (kDa)

5.59

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	3 cut(s)	78, 99, 216
AclWI	GGATC	2 cut(s)	435, 487
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	278, 372
AcuI	CTGAAG	1 cut(s)	14
AcyI	GRCGYC	2 cut(s)	44, 447
AfaI	GTAC	2 cut(s)	164, 516
AfiI	CCNNNNNNNGG	3 cut(s)	201, 311, 524
AgsI	TTSAA	2 cut(s)	424, 646
AjnI	CCWGG	3 cut(s)	219, 442, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	4 cut(s)	226, 495, 524, 623
AluI	AGCT	4 cut(s)	226, 495, 524, 623
AlwI	GGATC	2 cut(s)	435, 487
AlwNI	CAGNNNCTG	2 cut(s)	226, 524
AoxI	GGCC	3 cut(s)	177, 313, 396
ApeKI	GCWGC	2 cut(s)	5, 623
ApoI	RAATTY	2 cut(s)	278, 372
AspLEI	GCGC	2 cut(s)	104, 449
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	4 cut(s)	13, 121, 301, 547
AvaII	GGWCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	610
BceAI	ACGGC	4 cut(s)	164, 165, 179, 607
BciT130I	CCWGG	3 cut(s)	221, 444, 603
BcnI	CCSGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	569
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	3 cut(s)	6, 100, 624
BlsI	GCNGC	3 cut(s)	7, 101, 625
Bme1390I	CCNGG	4 cut(s)	72, 221, 444, 603
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	76, 448
BmrFI	CCNGG	4 cut(s)	72, 221, 444, 603
BmsI	GCATC	3 cut(s)	373, 496, 518
BpiI	GAAGAC	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	140, 624
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	2 cut(s)	44, 447
BsaJI	CCNNGG	4 cut(s)	70, 94, 219, 393
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	454, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 311, 524
Bse118I	RCCGGY	1 cut(s)	311
BseBI	CCWGG	3 cut(s)	221, 444, 603
BseDI	CCNNGG	4 cut(s)	70, 94, 219, 393
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	201, 311, 524
BseMII	CTCAG	2 cut(s)	262, 339
BseXI	GCAGC	1 cut(s)	610
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	3 cut(s)	179, 315, 398
BshNI	GGYRCC	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	24, 72, 312
BslI	CCNNNNNNNGG	3 cut(s)	201, 311, 524
BsnI	GGCC	3 cut(s)	179, 315, 398
Bsp143I	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
BspACI	CCGC	3 cut(s)	78, 99, 216
BspANI	GGCC	3 cut(s)	179, 315, 398
BspCNI	CTCAG	2 cut(s)	261, 338
BspLI	GGNNCC	2 cut(s)	76, 448
BspPI	GGATC	2 cut(s)	435, 487
BspT107I	GGYRCC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	4 cut(s)	70, 94, 219, 393
BssMI	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
BssNI	GRCGYC	2 cut(s)	44, 447
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	3 cut(s)	221, 444, 603
Bst4CI	ACNGT	1 cut(s)	57
BstACI	GRCGYC	2 cut(s)	44, 447
BstC8I	GCNNGC	2 cut(s)	192, 317
BstDEI	CTNAG	2 cut(s)	248, 325
BstF5I	GGATG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	2 cut(s)	104, 449
BstKTI	GATC	6 cut(s)	36, 258, 430, 482, 540, 579
BstMBI	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
BstNI	CCWGG	3 cut(s)	221, 444, 603
BstSCI	CCNGG	4 cut(s)	70, 219, 442, 601
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	3 cut(s)	179, 315, 398
BtsCI	GGATG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	192, 317
CaiI	CAGNNNCTG	2 cut(s)	226, 524
CfoI	GCGC	2 cut(s)	104, 449
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	163, 515
CviQI	GTAC	2 cut(s)	163, 515
DdeI	CTNAG	2 cut(s)	248, 325
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	6 cut(s)	35, 257, 429, 481, 539, 578
DpnII	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
EaeI	YGGCCR	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	219, 442, 601
EcoT14I	CCWWGG	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	393
FaiI	YATR	1 cut(s)	581
Fnu4HI	GCNGC	3 cut(s)	6, 100, 624
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	3 cut(s)	6, 100, 624
FspBI	CTAG	1 cut(s)	569
GlaI	GCGC	2 cut(s)	103, 448
GluI	GCNGC	3 cut(s)	6, 100, 624
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	2 cut(s)	140, 624
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	179, 315, 398
HapII	CCGG	3 cut(s)	24, 72, 312
HhaI	GCGC	2 cut(s)	104, 449
Hin1I	GRCGYC	2 cut(s)	44, 447
Hin6I	GCGC	2 cut(s)	102, 447
HinP1I	GCGC	2 cut(s)	102, 447
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	3 cut(s)	124, 233, 572
HpaII	CCGG	3 cut(s)	24, 72, 312
HphI	GGTGA	4 cut(s)	13, 121, 301, 547
Hpy166II	GTNNAC	2 cut(s)	147, 163
Hpy188I	TCNGA	7 cut(s)	33, 251, 328, 340, 371, 559, 637
Hpy188III	TCNNGA	2 cut(s)	139, 569
Hpy8I	GTNNAC	2 cut(s)	147, 163
Hpy99I	CGWCG	2 cut(s)	46, 49
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	44, 531
HpyCH4V	TGCA	3 cut(s)	8, 386, 509
HpyF3I	CTNAG	2 cut(s)	248, 325
HpySE526I	ACGT	2 cut(s)	44, 531
Hsp92I	GRCGYC	2 cut(s)	44, 447
HspAI	GCGC	2 cut(s)	102, 447
KasI	GGCGCC	1 cut(s)	446
Kzo9I	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
LmnI	GCTCC	3 cut(s)	80, 223, 605
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	3 cut(s)	373, 496, 518
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	2 cut(s)	44, 531
MaeIII	GTNAC	2 cut(s)	259, 289
MalI	GATC	6 cut(s)	35, 257, 429, 481, 539, 578
MboI	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
MboII	GAAGA	1 cut(s)	412
MluCI	AATT	4 cut(s)	278, 343, 372, 638
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	2 cut(s)	242, 581
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	2 cut(s)	198, 485
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	3 cut(s)	24, 72, 312
MspR9I	CCNGG	4 cut(s)	72, 221, 444, 603
MvaI	CCWGG	3 cut(s)	221, 444, 603
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
NlaIV	GGNNCC	2 cut(s)	76, 448
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	511
OliI	CACNNNNGTG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 537
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	7, 101, 625
PleI	GAGTC	2 cut(s)	241, 580
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	2 cut(s)	241, 580
Psp6I	CCWGG	3 cut(s)	219, 442, 601
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	3 cut(s)	219, 442, 601
PspN4I	GGNNCC	2 cut(s)	76, 448
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	2 cut(s)	226, 524
PsyI	GACNNNGTC	1 cut(s)	232
RsaI	GTAC	2 cut(s)	164, 516
RsaNI	GTAC	2 cut(s)	163, 515
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	198, 485
SatI	GCNGC	3 cut(s)	6, 100, 624
Sau3AI	GATC	6 cut(s)	33, 255, 427, 479, 537, 576
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	242, 581
ScrFI	CCNGG	4 cut(s)	72, 221, 444, 603
SfaNI	GCATC	3 cut(s)	373, 496, 518
SfoI	GGCGCC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	4 cut(s)	278, 343, 372, 638
SsiI	CCGC	3 cut(s)	78, 99, 216
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	4 cut(s)	70, 219, 442, 601
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	47, 534
TaqI	TCGA	3 cut(s)	36, 540, 575
TasI	AATT	4 cut(s)	278, 343, 372, 638
TatI	WGTACW	1 cut(s)	162
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	198, 485
Tru9I	TTAA	2 cut(s)	198, 485
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	5, 623
Tsp45I	GTSAC	1 cut(s)	289
TspGWI	ACGGA	3 cut(s)	226, 245, 502
TspRI	CASTG	1 cut(s)	385
Tth111I	GACNNNGTC	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	2 cut(s)	278, 372
XbaI	TCTAGA	1 cut(s)	568
XspI	CTAG	1 cut(s)	569
ZraI	GACGTC	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.