Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004474

Physical Location & Seq

Genomic Coordinates Reverse (-)

20280844 .. 20281283

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTATTTGGCCTTGAGTCCATTTGAGAAATTCACACAGGTGACGTTCATACAGCACTTAACTGGCCGGCAGTACTCAGAGAAAGTTGCAGAGAATTGCATTGCCTCTTGGAAATCAGCCGGATTTTACAGCGGCGAAGAAGCCAAAGCCATTGAAACGTTCCTAGAGGTCTTCAAAGATCAAACCTTTCCTCCTGGCTCCTCTGTCTCTTTCGTTCAATCACCACCACATGACTCATTAACAGTAACTAGAACTTACGTACGCATATATATTCTTTTTTTATCTTTATATATTTTATTATACAACAGAAGTGTGAGATCGAATTTGAAACCTCGAGTGCTGAAACGAATGCTCTTAACTAACCAAGCTAAGAATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

127

Amino Acids

14.51

Weight (kDa)

9.59

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004474)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55120
fragaria_vesca	FvH4_7g20870
malus_domestica	MD01G1117800.v1.1 MD01G1118000.v1.1 MD01G1118100.v1.1 MD01G1118300.v1.1 MD07G1186300.v1.1 MD07G1186400.v1.1
prunus_persica	Prupe.2G225200_v2.0.a1
pyrus_communis	pycom01g14550 pycom07g17740 pycom07g17750 pycom07g17760 pycom07g17770
rosa_chinensis	RchiOBHm_Chr1g0365111 RchiOBHm_Chr7g0221421 RchiOBHm_Chr7g0221431
rosa_laevigata	RLG00000027441
rosa_multiflora	Rmu_co8490591.1_g000001 Rmu_sc0001688.1_g000009 Rmu_sc0024062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291420 Rroxscaffold_4G00291930
rosa_rugosa	Rorug01G0319900
rosa_samantha	Rh1AG328600 Rh1BG290200 Rh1CG306900 Rh1DG321800 Rh7AG342300 Rh7CG359900
rosa_wichuraiana	Rw1G029160 Rw7G029060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AclI	AACGTT	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	29, 322
AfaI	GTAC	2 cut(s)	74, 261
AgsI	TTSAA	4 cut(s)	155, 175, 218, 328
AjnI	CCWGG	1 cut(s)	193
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw26I	GTCTC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	2 cut(s)	9, 64
ApoI	RAATTY	2 cut(s)	29, 322
AsuHPI	GGTGA	2 cut(s)	52, 213
AvaI	CYCGRG	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	2 cut(s)	164, 249
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	11, 66
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	67, 120
BsiWI	CGTACG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	11, 66
BsoBI	CYCGRG	1 cut(s)	333
Bsp143I	GATC	2 cut(s)	178, 317
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	2 cut(s)	11, 66
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	2 cut(s)	178, 317
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	76, 369
BstKTI	GATC	2 cut(s)	181, 320
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	178, 317
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSNI	TACGTA	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	11, 66
Cac8I	GCNNGC	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	73, 260
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	7 cut(s)	11, 66, 119, 143, 149, 198, 368
CviKI_1	RGCY	7 cut(s)	11, 66, 119, 143, 149, 198, 368
CviQI	GTAC	2 cut(s)	73, 260
DdeI	CTNAG	2 cut(s)	76, 369
DpnI	GATC	2 cut(s)	180, 319
DpnII	GATC	2 cut(s)	178, 317
EaeI	YGGCCR	1 cut(s)	64
Eco105I	TACGTA	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	233
FaiI	YATR	8 cut(s)	50, 231, 266, 268, 270, 289, 291, 301
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	2 cut(s)	164, 249
GluI	GCNGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	11, 66
HapII	CCGG	2 cut(s)	67, 120
Hin1II	CATG	1 cut(s)	233
HinfI	GANTC	3 cut(s)	16, 233, 373
HpaII	CCGG	2 cut(s)	67, 120
HphI	GGTGA	2 cut(s)	52, 213
Hpy188I	TCNGA	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	44, 158, 258
HpyCH4V	TGCA	2 cut(s)	89, 99
HpyF3I	CTNAG	2 cut(s)	76, 369
HpySE526I	ACGT	3 cut(s)	44, 158, 258
Hsp92II	CATG	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	178, 317
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	6 cut(s)	23, 48, 80, 133, 180, 207
MaeI	CTAG	2 cut(s)	164, 249
MaeII	ACGT	3 cut(s)	44, 158, 258
MaeIII	GTNAC	2 cut(s)	40, 244
MalI	GATC	2 cut(s)	180, 319
MboI	GATC	2 cut(s)	178, 317
MboII	GAAGA	2 cut(s)	149, 163
MluCI	AATT	3 cut(s)	29, 94, 322
MlyI	GAGTC	2 cut(s)	25, 227
MnlI	CCTC	5 cut(s)	115, 160, 201, 211, 342
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	3 cut(s)	59, 239, 356
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	2 cut(s)	67, 120
MspR9I	CCNGG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	195
NaeI	GCCGGC	1 cut(s)	68
NdeII	GATC	2 cut(s)	178, 317
NgoMIV	GCCGGC	1 cut(s)	66
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	40
OliI	CACNNNNGTG	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	333
PctI	GAATGC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	373
Pfl23II	CGTACG	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	134
PleI	GAGTC	2 cut(s)	24, 227
PpsI	GAGTC	2 cut(s)	24, 227
Ppu21I	YACGTR	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspLI	CGTACG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	199
PspXI	VCTCGAGB	1 cut(s)	333
RsaI	GTAC	2 cut(s)	74, 261
RsaNI	GTAC	2 cut(s)	73, 260
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	59, 239, 356
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	178, 317
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	2 cut(s)	25, 227
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	8 cut(s)	42, 47, 161, 171, 188, 261, 334, 370
Sfr274I	CTCGAG	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	13, 333
SmoI	CTYRAG	2 cut(s)	13, 333
SnaBI	TACGTA	1 cut(s)	259
Sse9I	AATT	3 cut(s)	29, 94, 322
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	2 cut(s)	164, 249
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	47, 161, 261
TaqI	TCGA	2 cut(s)	320, 334
TasI	AATT	3 cut(s)	29, 94, 322
TatI	WGTACW	1 cut(s)	72
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	59, 239, 356
Tru9I	TTAA	3 cut(s)	59, 239, 356
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	37
XapI	RAATTY	2 cut(s)	29, 322
XhoI	CTCGAG	1 cut(s)	333
XspI	CTAG	2 cut(s)	164, 249
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.