Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Forward (+)

20541269 .. 20546053

Gene Structure 4785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGTGTGGTTTCGTGCTGGTTCCAGTGTTACAAAGCTAGCTGTTAGAAGGATTTTGAATCAGGGTGCTTCGTATGCGACGAGGACACGGTCTATTCCGTCTCAAACTCGTTCCTTTCACTCGACTATATGCAGACCAAAGGCTCAGAGTGCTCCAGTTCCTAGAGCTGTTCCTCTTTCTAAGCTAACTGATAGTTTCTTAGATGGGACGAGCAGTGTCTACCTTGAGGAGTTACAAAGGGCTTGGGAAGCTGATCCTAACAGTGTAGATGAGTCTTGGGATAATTTCTTTAGGAACTTTGTTGGTCAGGCTGCCACGTCTCCTGGCATCTCTGGGCAGACAATTCAGGAGAGTATGAGGCTGTTGTTACTTGTTAGGGCTTATCAGGTGAATGGTCACATGAAAGCGAAGTTGGATCCGTTAGGTTTGGAACAGCGAGAGATCCCTGAGGATCTTGACTTGGCTCTTTATGGATTCACTGAGGCTGACCTTGACAGAGAGTTCTTCTTGGGGGTGTGGCAGATGTCAGGATTCATGTCTGAGAACCGACCAGTGCAGACCCTTCGTTCCATATTGACAAGGCTCGAACAGGCATACTGTGGGAATATCGGATTTGAGTATATGCACATTGCAGATCGAGATAAATGTAACTGGTTGAGAGAAAAGATTGAGACACCAACTCCTTGGCGGTACAACAGGGAGCGCCGTGAGGTGATTCTCGATCGGCTTGCATGGAGTACTCAGTTCGAGAATTTCTTAGCTACCAAGTGGACAACAGCCAAAAGATTTGGACTTGAGGGAGGAGAATCATTAATTCCTGGAATGAAGGAGATGTTTGACAGAGCAGCAGATCTTGGAGTAGAGAGTATTGTTATTGGAATGTCTCACAGAGGAAGATTGAATGTTCTGGGTAATGTTGTTCGGAAGCCACTCCGTCAGATATTTAGTGAGTTCAGTGGTGGTATTAGGCCTGTAGATGAAGTTGGCTACACTGGAACTGGTGATGTCAAATATCACTTGGGAACCTCTTATGATCGACCTACAAGAGGTGGGAAGAAAATCCATCTCTCTTTGGTTGCTAATCCAAGTCACTTGGAAGCTGCAGATTCTGTTGTTGTTGGCAAAACCAGAGCAAAACAGTACTACTCCAATGATTTAGACAGGACCAAAAATTTAGGTATTTTGATTCACGGAGATGGTAGTTTTGCTGGACAAGGGGTAGTCTATGAAACTCTCCATCTTAGTGCTCTTCCAAACTACACCACCGGAGGAACCATACATATTGTGGTGAACAACCAAGTGGCTTTCACGACAGATCCAAGGGCGGGGAGATCTTCCCAGTATTGTACTGATGTTGCAAAGGCTTTGAGTGCTCCCATCTTTCATGTTAATGGGGATGATGTTGAGGCTGTTGTTCATGCCTGCGAGCTTGCTGCTGAGTGGCGTCAGACTTTTCATTCTGATGTTGTCGTTGATTTGGTTTGCTACCGTAGGTTCGGGCATAATGAGATAGATGAACCATCTTTCACTCAGCCAAAAATGTACAAGGTTATCAAAAATCATCCTTCAACCCTTCAGATCTACCACAAAAAGCTCTTGGAATGCGGTGAAGTATCACAACAGGATATTGACCGGATACAGGAAAAGGTTAACACCATCCTCAATGAAGAATTTGTCGCTAGTAAGGACTATCTCCCTAAGAAACGAGATTGGCTTTCAACCAATTGGGCTGGATTTAAGTCTCCTGAGCAGATCTCACGTGTTAGAAACACTGGCGTCAAACCAGAGATACTGAAGACTGTTGGCAAGGCAATTTCATCTCTTCCAGAAAACTTCAAGCCACACAGGGCAGTGAAGAAAGTTTATGAACAACGTGCCCAAATGATTGAATCAGGAGAGGGAGTTGACTGGGCCCTTGCAGAAGCTCTTGCTTTTGCTACCTTAGTTGTGGAAGGCAATCATGTCCGATTGAGTGGTCAGGATGTCGAACGAGGAACATTTAGTCATCGTCATTCTGTCCTTCATGACCAGGAAACTGGAGAAGAGTATTGTCCTCTAGATCATCTCATCATGAATCAGGATCCTGAGATGTTTACTGTTAGCAACAGTTCTCTTTCAGAATTTGGTGTCCTTGGGTTCGAATTGGGTTACTCCATGGAAAGCCCGAACTCGTTGGTACTATGGGAAGCTCAGTTTGGAGACTTCGCCAATGGAGCTCAGGTGATATTTGATCAGTTCATCAGCAGTGGAGAAGCCAAATGGCTGCGTCAAACCGGGCTTGTTATGCTACTTCCCCATGGTTATGATGGTCAGGGACCTGAACATTCAAGTGCGAGGTTGGAACGTTACCTTCAGATGAGTGATGATAATCCCTATGTCATACCAGACATGGAACCAACAATGCGAAAGCAAATTCAAGAATGTAATTGGCAGATTGTCAATGCCACAACTCCCGCCAACTATTTCCATGTTCTGCGGCGACAGATACACAGAGACTTCCGTAAGCCTCTGATTGTAATGGCACCAAAGAACTTGCTCCGTCACAAGGACTGCAAATCAAATCTCTCAGAGTTTGATGATGTCCAAGGCCACCCAGGTTTTGACAAGCAAGGAACTAGATTTAAGCGATTAATCAAGGATCAGAATGATCACTCTGATCTTGAAGAAGGCATCAGAAGATTGGTACTTTGCTCCGGAAAGGTCTATTATGAGCTTGATGATGAACGGAAGAAGGTTGGCGCAACAGATGTTGCTATCTGTAGAGTTGAACAGCTTTGTCCTTTCCCATATGATCTCATTCAGCGTGAGCTCAAGAGATATCCAAATGCGGAGATCGTTTGGTGCCAAGAAGAGGCGATGAACATGGGAGCATTCAGCTACATATCTCCACGGCTATGGACAGCAATGAGAAGCGTAAACAGAGGAGATATGGAAGACATTAAGTATGTTGGTCGTGGTCCTTCTGCTGCAACTGCCACGGGTTTCTATACTTTCCATGTCAAAGAGCAAGCCGGGCTTGTCCAGAAAGCCATCGGAAAGGAACCCATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

1017

Amino Acids

115.16

Weight (kDa)

6.47

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	64 - 101	4.7e-15	2-oxoglutarate dehydrogenase N-terminus
E1_dh	PF00676	243 - 564	7e-59	Dehydrogenase E1 component
Transket_pyr	PF02779	634 - 847	8.6e-50	Transketolase, pyrimidine binding domain
OxoGdeHyase_C	PF16870	870 - 1010	2.6e-48	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	2521, 2841
AccI	GTMKAC	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	2693
AciI	CCGC	6 cut(s)	688, 1325, 1605, 2454, 2476, 2828
AclI	AACGTT	1 cut(s)	2344
AclWI	GGATC	9 cut(s)	248, 410, 423, 436, 459, 1310, 2075, 2088, 2646
AcsI	RAATTY	5 cut(s)	751, 1171, 1670, 2120, 2412
AcuI	CTGAAG	3 cut(s)	1559, 1814, 2336
AcvI	CACGTG	1 cut(s)	1760
AcyI	GRCGYC	2 cut(s)	1444, 1776
AfaI	GTAC	7 cut(s)	692, 739, 1142, 1348, 1544, 2178, 2685
AfiI	CCNNNNNNNGG	5 cut(s)	1046, 1325, 1639, 2545, 2851
AflIII	ACRYGT	1 cut(s)	1759
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	4 cut(s)	322, 817, 2028, 2593
AjuI	GAANNNNNNNTTGG	4 cut(s)	395, 427, 2178, 2210
Alw21I	GWGCWC	5 cut(s)	154, 1249, 1375, 2218, 2811
Alw26I	GTCTC	7 cut(s)	105, 324, 665, 888, 1746, 2193, 2487
AlwI	GGATC	9 cut(s)	248, 410, 423, 436, 459, 1310, 2075, 2088, 2646
AlwNI	CAGNNNCTG	1 cut(s)	1109
Aor13HI	TCCGGA	1 cut(s)	2693
AoxI	GGCC	3 cut(s)	968, 1911, 2587
ApaI	GGGCCC	1 cut(s)	1915
ApeKI	GCWGC	6 cut(s)	311, 845, 1100, 1433, 2263, 2966
ApoI	RAATTY	5 cut(s)	751, 1171, 1670, 2120, 2412
AseI	ATTAAT	2 cut(s)	812, 2630
AspLEI	GCGC	2 cut(s)	705, 2741
AspS9I	GGNCC	5 cut(s)	1164, 1911, 1912, 2315, 2957
AsuC2I	CCSGG	2 cut(s)	2275, 3013
AsuHPI	GGTGA	6 cut(s)	400, 724, 1013, 1300, 1619, 2233
AsuII	TTCGAA	1 cut(s)	2139
AsuNHI	GCTAGC	1 cut(s)	37
AvaII	GGWCC	3 cut(s)	1164, 2315, 2957
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	2 cut(s)	1879, 1915
BamHI	GGATCC	2 cut(s)	415, 2080
BanI	GGYRCC	2 cut(s)	2521, 2841
BanII	GRGCYC	3 cut(s)	1915, 2218, 2811
BbrPI	CACGTG	1 cut(s)	1760
BbsI	GAAGAC	2 cut(s)	1802, 2940
Bbv12I	GWGCWC	5 cut(s)	154, 1249, 1375, 2218, 2811
BbvI	GCAGC	6 cut(s)	298, 857, 1087, 1420, 2250, 2953
BceAI	ACGGC	2 cut(s)	690, 2906
BcgI	CGANNNNNNTGC	6 cut(s)	545, 579, 710, 744, 1415, 1449
BciT130I	CCWGG	4 cut(s)	324, 819, 2030, 2595
BciVI	GTATCC	1 cut(s)	1629
BclI	TGATCA	2 cut(s)	2230, 2647
BcnI	CCSGG	2 cut(s)	2275, 3013
BcoDI	GTCTC	7 cut(s)	105, 324, 665, 888, 1746, 2193, 2487
BfaI	CTAG	5 cut(s)	38, 162, 1680, 2057, 2616
BfmI	CTRYAG	3 cut(s)	972, 1101, 2758
BfoI	RGCGCY	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	1629
BglII	AGATCT	4 cut(s)	850, 1331, 1578, 1752
BisI	GCNGC	7 cut(s)	312, 846, 1101, 1434, 2264, 2477, 2967
BlsI	GCNGC	7 cut(s)	313, 847, 1102, 1435, 2265, 2478, 2968
BmcAI	AGTACT	2 cut(s)	739, 1142
Bme1390I	CCNGG	6 cut(s)	324, 819, 2030, 2275, 2595, 3013
Bme18I	GGWCC	3 cut(s)	1164, 2315, 2957
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	5 cut(s)	1164, 1911, 1912, 2315, 2957
BmrFI	CCNGG	6 cut(s)	324, 819, 2030, 2275, 2595, 3013
BmrI	ACTGGG	2 cut(s)	1333, 1918
BmsI	GCATC	2 cut(s)	336, 2679
BmtI	GCTAGC	1 cut(s)	41
BmuI	ACTGGG	2 cut(s)	1333, 1918
BpiI	GAAGAC	2 cut(s)	1802, 2940
BplI	GAGNNNNNCTC	2 cut(s)	1739, 1771
BpmI	CTGGAG	2 cut(s)	138, 2058
Bpu10I	CCTNAGC	2 cut(s)	1746, 2217
Bpu14I	TTCGAA	1 cut(s)	2139
BpuEI	CTTGAG	3 cut(s)	245, 815, 2795
BpuMI	CCSGG	2 cut(s)	2275, 3013
BsaAI	YACGTR	1 cut(s)	1760
BsaBI	GATNNNNATC	1 cut(s)	2367
BsaHI	GRCGYC	2 cut(s)	1444, 1776
BsaJI	CCNNGG	9 cut(s)	683, 1319, 2131, 2154, 2296, 2584, 2593, 2888, 2976
BsaWI	WCCGGW	3 cut(s)	1265, 1632, 2693
BsaXI	ACNNNNNCTCC	6 cut(s)	664, 694, 1887, 1917, 2205, 2235
Bsc4I	CCNNNNNNNGG	5 cut(s)	1046, 1325, 1639, 2545, 2851
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	2 cut(s)	627, 2910
Bse8I	GATNNNNATC	1 cut(s)	2367
BseAI	TCCGGA	1 cut(s)	2693
BseBI	CCWGG	4 cut(s)	324, 819, 2030, 2595
BseDI	CCNNGG	9 cut(s)	683, 1319, 2131, 2154, 2296, 2584, 2593, 2888, 2976
BseGI	GGATG	4 cut(s)	1402, 1561, 1656, 1987
BseJI	GATNNNNATC	1 cut(s)	2367
BseLI	CCNNNNNNNGG	5 cut(s)	1046, 1325, 1639, 2545, 2851
BseMI	GCAATG	2 cut(s)	627, 2910
BseRI	GAGGAG	3 cut(s)	242, 816, 2937
BseSI	GKGCMC	2 cut(s)	1879, 1915
BseXI	GCAGC	6 cut(s)	298, 857, 1087, 1420, 2250, 2953
BsgI	GTGCAG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	724
BshFI	GGCC	3 cut(s)	970, 1913, 2589
BshNI	GGYRCC	2 cut(s)	2521, 2841
BsiEI	CGRYCG	1 cut(s)	724
BsiHKAI	GWGCWC	5 cut(s)	154, 1249, 1375, 2218, 2811
BsiSI	CCGG	5 cut(s)	1266, 1633, 2274, 2694, 3012
BslFI	GGGAC	2 cut(s)	220, 2328
BslI	CCNNNNNNNGG	5 cut(s)	1046, 1325, 1639, 2545, 2851
BsmAI	GTCTC	7 cut(s)	105, 324, 665, 888, 1746, 2193, 2487
BsmBI	CGTCTC	2 cut(s)	105, 324
BsmFI	GGGAC	2 cut(s)	220, 2328
BsmI	GAATGC	2 cut(s)	1607, 2870
BsnI	GGCC	3 cut(s)	970, 1913, 2589
Bsp119I	TTCGAA	1 cut(s)	2139
Bsp120I	GGGCCC	1 cut(s)	1911
Bsp1286I	GDGCHC	7 cut(s)	154, 1249, 1375, 1879, 1915, 2218, 2811
Bsp13I	TCCGGA	1 cut(s)	2693
Bsp1407I	TGTACA	1 cut(s)	1542
Bsp19I	CCATGG	2 cut(s)	2154, 2296
BspACI	CCGC	6 cut(s)	688, 1325, 1605, 2454, 2476, 2828
BspANI	GGCC	3 cut(s)	970, 1913, 2589
BspEI	TCCGGA	1 cut(s)	2693
BspHI	TCATGA	2 cut(s)	2023, 2070
BspMAI	CTGCAG	1 cut(s)	1105
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	9 cut(s)	248, 410, 423, 436, 459, 1310, 2075, 2088, 2646
BspQI	GCTCTTC	1 cut(s)	1254
BspT104I	TTCGAA	1 cut(s)	2139
BspT107I	GGYRCC	2 cut(s)	2521, 2841
BsrDI	GCAATG	2 cut(s)	627, 2910
BsrGI	TGTACA	1 cut(s)	1542
BssECI	CCNNGG	9 cut(s)	683, 1319, 2131, 2154, 2296, 2584, 2593, 2888, 2976
BssNI	GRCGYC	2 cut(s)	1444, 1776
BssT1I	CCWWGG	6 cut(s)	683, 1319, 2131, 2154, 2296, 2584
Bst2UI	CCWGG	4 cut(s)	324, 819, 2030, 2595
Bst4CI	ACNGT	8 cut(s)	90, 263, 599, 1140, 1490, 1801, 2098, 2108
Bst6I	CTCTTC	4 cut(s)	1254, 1827, 2037, 2844
BstACI	GRCGYC	2 cut(s)	1444, 1776
BstAUI	TGTACA	1 cut(s)	1542
BstBAI	YACGTR	1 cut(s)	1760
BstBI	TTCGAA	1 cut(s)	2139
BstC8I	GCNNGC	6 cut(s)	39, 729, 1423, 1427, 1431, 3009
BstDSI	CCRYGG	4 cut(s)	2154, 2296, 2888, 2976
BstENI	CCTNNNNNAGG	1 cut(s)	1044
BstF5I	GGATG	4 cut(s)	1402, 1561, 1656, 1987
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	2 cut(s)	705, 2741
BstMAI	GTCTC	7 cut(s)	105, 324, 665, 888, 1746, 2193, 2487
BstMCI	CGRYCG	1 cut(s)	724
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 149, 248, 1370, 2213, 2284, 2972, 3013
BstNI	CCWGG	4 cut(s)	324, 819, 2030, 2595
BstSCI	CCNGG	6 cut(s)	322, 817, 2028, 2273, 2593, 3011
BstSFI	CTRYAG	3 cut(s)	972, 1101, 2758
BstSLI	GKGCMC	2 cut(s)	1879, 1915
BstV1I	GCAGC	6 cut(s)	298, 857, 1087, 1420, 2250, 2953
BstV2I	GAAGAC	2 cut(s)	1802, 2940
BstX2I	RGATCY	9 cut(s)	415, 441, 451, 850, 1315, 1331, 1578, 1752, 2080
BstXI	CCANNNNNNTGG	3 cut(s)	684, 2036, 2895
BstYI	RGATCY	9 cut(s)	415, 441, 451, 850, 1315, 1331, 1578, 1752, 2080
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	1629
BsuRI	GGCC	3 cut(s)	970, 1913, 2589
BtgI	CCRYGG	4 cut(s)	2154, 2296, 2888, 2976
BtgZI	GCGATG	1 cut(s)	2870
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	4 cut(s)	1402, 1561, 1656, 1987
BtsI	GCAGTG	3 cut(s)	220, 1857, 2251
Cac8I	GCNNGC	6 cut(s)	39, 729, 1423, 1427, 1431, 3009
CaiI	CAGNNNCTG	1 cut(s)	1109
CciI	TCATGA	2 cut(s)	2023, 2070
CfoI	GCGC	2 cut(s)	705, 2741
Cfr13I	GGNCC	5 cut(s)	1164, 1911, 1912, 2315, 2957
CseI	GACGC	3 cut(s)	1433, 1765, 2255
Csp6I	GTAC	7 cut(s)	691, 738, 1141, 1347, 1543, 2177, 2684
CviQI	GTAC	7 cut(s)	691, 738, 1141, 1347, 1543, 2177, 2684
Eam1104I	CTCTTC	4 cut(s)	1254, 1827, 2037, 2844
EarI	CTCTTC	4 cut(s)	1254, 1827, 2037, 2844
Ecl136II	GAGCTC	2 cut(s)	2216, 2809
Eco130I	CCWWGG	6 cut(s)	683, 1319, 2131, 2154, 2296, 2584
Eco147I	AGGCCT	1 cut(s)	970
Eco24I	GRGCYC	3 cut(s)	1915, 2218, 2811
Eco32I	GATATC	1 cut(s)	2819
Eco47I	GGWCC	3 cut(s)	1164, 2315, 2957
Eco53kI	GAGCTC	2 cut(s)	2216, 2809
Eco57I	CTGAAG	3 cut(s)	1559, 1814, 2336
Eco72I	CACGTG	1 cut(s)	1760
Eco81I	CCTNAGG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	2216, 2809
EcoNI	CCTNNNNNAGG	1 cut(s)	1044
EcoO109I	RGGNCCY	2 cut(s)	1912, 2315
EcoRII	CCWGG	4 cut(s)	322, 817, 2028, 2593
EcoRV	GATATC	1 cut(s)	2819
EcoT14I	CCWWGG	6 cut(s)	683, 1319, 2131, 2154, 2296, 2584
EcoT38I	GRGCYC	3 cut(s)	1915, 2218, 2811
ErhI	CCWWGG	6 cut(s)	683, 1319, 2131, 2154, 2296, 2584
Esp3I	CGTCTC	2 cut(s)	105, 324
FalI	AAGNNNNNCTT	2 cut(s)	3000, 3032
FaqI	GGGAC	2 cut(s)	220, 2328
FauI	CCCGC	2 cut(s)	1318, 2461
FauNDI	CATATG	1 cut(s)	2788
FbaI	TGATCA	2 cut(s)	2230, 2647
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	7 cut(s)	312, 846, 1101, 1434, 2264, 2477, 2967
FokI	GGATG	4 cut(s)	1409, 1548, 1643, 1994
FriOI	GRGCYC	3 cut(s)	1915, 2218, 2811
Fsp4HI	GCNGC	7 cut(s)	312, 846, 1101, 1434, 2264, 2477, 2967
FspBI	CTAG	5 cut(s)	38, 162, 1680, 2057, 2616
GlaI	GCGC	2 cut(s)	704, 2740
GluI	GCNGC	7 cut(s)	312, 846, 1101, 1434, 2264, 2477, 2967
GsuI	CTGGAG	2 cut(s)	138, 2058
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	3 cut(s)	970, 1913, 2589
HapII	CCGG	5 cut(s)	1266, 1633, 2274, 2694, 3012
HgaI	GACGC	3 cut(s)	1433, 1765, 2255
HhaI	GCGC	2 cut(s)	705, 2741
Hin1I	GRCGYC	2 cut(s)	1444, 1776
Hin6I	GCGC	2 cut(s)	703, 2739
HinP1I	GCGC	2 cut(s)	703, 2739
HincII	GTYRAC	2 cut(s)	1651, 1906
HindII	GTYRAC	2 cut(s)	1651, 1906
HpaI	GTTAAC	1 cut(s)	1651
HpaII	CCGG	5 cut(s)	1266, 1633, 2274, 2694, 3012
HphI	GGTGA	6 cut(s)	400, 724, 1013, 1300, 1619, 2233
Hpy166II	GTNNAC	7 cut(s)	220, 771, 1291, 1651, 1906, 2094, 2917
Hpy8I	GTNNAC	7 cut(s)	220, 771, 1291, 1651, 1906, 2094, 2917
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	8 cut(s)	90, 263, 599, 1140, 1490, 1801, 2098, 2108
HpyCH4IV	ACGT	4 cut(s)	317, 1759, 1873, 2344
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 149, 248, 1370, 2213, 2284, 2972, 3013
HpySE526I	ACGT	4 cut(s)	317, 1759, 1873, 2344
Hsp92I	GRCGYC	2 cut(s)	1444, 1776
HspAI	GCGC	2 cut(s)	703, 2739
Kpn2I	TCCGGA	1 cut(s)	2693
Ksp22I	TGATCA	2 cut(s)	2230, 2647
KspAI	GTTAAC	1 cut(s)	1651
LguI	GCTCTTC	1 cut(s)	1254
LmnI	GCTCC	7 cut(s)	157, 700, 1378, 2213, 2541, 2696, 2867
Lsp1109I	GCAGC	6 cut(s)	298, 857, 1087, 1420, 2250, 2953
LweI	GCATC	2 cut(s)	336, 2679
MaeI	CTAG	5 cut(s)	38, 162, 1680, 2057, 2616
MaeII	ACGT	4 cut(s)	317, 1759, 1873, 2344
MaeIII	GTNAC	9 cut(s)	28, 231, 366, 395, 647, 1088, 2147, 2345, 2540
MfeI	CAATTG	1 cut(s)	1723
MflI	RGATCY	9 cut(s)	415, 441, 451, 850, 1315, 1331, 1578, 1752, 2080
MhlI	GDGCHC	7 cut(s)	154, 1249, 1375, 1879, 1915, 2218, 2811
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	2 cut(s)	393, 2319
MroI	TCCGGA	1 cut(s)	2693
MseI	TTAA	8 cut(s)	812, 1389, 1650, 1737, 2622, 2630, 2940, 3052
MslI	CAYNNNNRTG	7 cut(s)	1194, 1242, 1389, 1461, 2301, 2328, 2893
MspI	CCGG	5 cut(s)	1266, 1633, 2274, 2694, 3012
MspR9I	CCNGG	6 cut(s)	324, 819, 2030, 2275, 2595, 3013
MunI	CAATTG	1 cut(s)	1723
Mva1269I	GAATGC	2 cut(s)	1607, 2870
MvaI	CCWGG	4 cut(s)	324, 819, 2030, 2595
MwoI	GCNNNNNNNGC	8 cut(s)	74, 149, 248, 1370, 2213, 2284, 2972, 3013
NciI	CCSGG	2 cut(s)	2275, 3013
NcoI	CCATGG	2 cut(s)	2154, 2296
NdeI	CATATG	1 cut(s)	2788
NheI	GCTAGC	1 cut(s)	37
NmuCI	GTSAC	3 cut(s)	395, 1088, 2540
NspV	TTCGAA	1 cut(s)	2139
PagI	TCATGA	2 cut(s)	2023, 2070
PceI	AGGCCT	1 cut(s)	970
PciSI	GCTCTTC	1 cut(s)	1254
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PctI	GAATGC	2 cut(s)	1607, 2870
PfeI	GAWTC	9 cut(s)	58, 474, 531, 715, 806, 1106, 1186, 1889, 2074
PflFI	GACNNNGTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	7 cut(s)	313, 847, 1102, 1435, 2265, 2478, 2968
Ple19I	CGATCG	1 cut(s)	724
PleI	GAGTC	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	1760
PmlI	CACGTG	1 cut(s)	1760
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	1760
PpuMI	RGGWCCY	1 cut(s)	2315
PshBI	ATTAAT	2 cut(s)	812, 2630
Psp124BI	GAGCTC	2 cut(s)	2218, 2811
Psp1406I	AACGTT	1 cut(s)	2344
Psp5II	RGGWCCY	1 cut(s)	2315
Psp6I	CCWGG	4 cut(s)	322, 817, 2028, 2593
PspCI	CACGTG	1 cut(s)	1760
PspGI	CCWGG	4 cut(s)	322, 817, 2028, 2593
PspOMI	GGGCCC	1 cut(s)	1911
PspPI	GGNCC	5 cut(s)	1164, 1911, 1912, 2315, 2957
PspPPI	RGGWCCY	1 cut(s)	2315
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	1 cut(s)	1109
PsuI	RGATCY	9 cut(s)	415, 441, 451, 850, 1315, 1331, 1578, 1752, 2080
PsyI	GACNNNGTC	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	724
RsaI	GTAC	7 cut(s)	692, 739, 1142, 1348, 1544, 2178, 2685
RsaNI	GTAC	7 cut(s)	691, 738, 1141, 1347, 1543, 2177, 2684
RseI	CAYNNNNRTG	7 cut(s)	1194, 1242, 1389, 1461, 2301, 2328, 2893
SacI	GAGCTC	2 cut(s)	2218, 2811
SapI	GCTCTTC	1 cut(s)	1254
SaqAI	TTAA	8 cut(s)	812, 1389, 1650, 1737, 2622, 2630, 2940, 3052
SatI	GCNGC	7 cut(s)	312, 846, 1101, 1434, 2264, 2477, 2967
Sau96I	GGNCC	5 cut(s)	1164, 1911, 1912, 2315, 2957
ScaI	AGTACT	2 cut(s)	739, 1142
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	6 cut(s)	324, 819, 2030, 2275, 2595, 3013
SduI	GDGCHC	7 cut(s)	154, 1249, 1375, 1879, 1915, 2218, 2811
SfaNI	GCATC	2 cut(s)	336, 2679
SfcI	CTRYAG	3 cut(s)	972, 1101, 2758
SfuI	TTCGAA	1 cut(s)	2139
SinI	GGWCC	3 cut(s)	1164, 2315, 2957
SmiMI	CAYNNNNRTG	7 cut(s)	1194, 1242, 1389, 1461, 2301, 2328, 2893
SmlI	CTYRAG	3 cut(s)	224, 794, 2810
SmoI	CTYRAG	3 cut(s)	224, 794, 2810
SseBI	AGGCCT	1 cut(s)	970
SsiI	CCGC	6 cut(s)	688, 1325, 1605, 2454, 2476, 2828
SspMI	CTAG	5 cut(s)	38, 162, 1680, 2057, 2616
SstI	GAGCTC	2 cut(s)	2218, 2811
StuI	AGGCCT	1 cut(s)	970
StyD4I	CCNGG	6 cut(s)	322, 817, 2028, 2273, 2593, 3011
StyI	CCWWGG	6 cut(s)	683, 1319, 2131, 2154, 2296, 2584
TaaI	ACNGT	8 cut(s)	90, 263, 599, 1140, 1490, 1801, 2098, 2108
TaiI	ACGT	4 cut(s)	320, 1762, 1876, 2347
TaqI	TCGA	8 cut(s)	122, 585, 637, 720, 747, 1036, 1986, 2139
TatI	WGTACW	4 cut(s)	737, 1140, 1346, 1542
TauI	GCSGC	1 cut(s)	2479
TfiI	GAWTC	9 cut(s)	58, 474, 531, 715, 806, 1106, 1186, 1889, 2074
Tru1I	TTAA	8 cut(s)	812, 1389, 1650, 1737, 2622, 2630, 2940, 3052
Tru9I	TTAA	8 cut(s)	812, 1389, 1650, 1737, 2622, 2630, 2940, 3052
TseFI	GTSAC	3 cut(s)	395, 1088, 2540
TseI	GCWGC	6 cut(s)	311, 845, 1100, 1433, 2263, 2966
Tsp45I	GTSAC	3 cut(s)	395, 1088, 2540
TspGWI	ACGGA	7 cut(s)	87, 408, 923, 1206, 2489, 2528, 2740
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	1164, 2315, 2957
VspI	ATTAAT	2 cut(s)	812, 2630
XagI	CCTNNNNNAGG	1 cut(s)	1044
XapI	RAATTY	5 cut(s)	751, 1171, 1670, 2120, 2412
XbaI	TCTAGA	1 cut(s)	2056
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1282, 2303
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	5 cut(s)	38, 162, 1680, 2057, 2616
ZrmI	AGTACT	2 cut(s)	739, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.