Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Forward (+)

57399090 .. 57403992

Gene Structure 4903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3024 bp

ATGAGGTGGTTTAGAGCAGGGTCTGGTGTGGCAAAGCTTGCCATTAGGAGATCAGTATCGACCAGTGGATCATACACTGTGACAAGGCGGGTTATTCCGTCGCAGAATCGGTACTTGCACACAACAATATGCAAGTCGAAGGCAGAAGCTGCGCCGGTTCCTCGTCCGGTGCCCCTTTCTAGGCTCACTGATAGTTTCTTGGATGGAACCAGCAGTGTGTATTTGGAAGGGCTTCAGAGGGCCTGGGAAGCTGACCCCGATAGCGTTGATGAGTCGTGGGATAATTTCTTTAGGAATTTTGTGGGTCAGGCCTCTACGTCGCCTGGGATTTCGGGGCAAACCATTCAAGAGAGTATGCGTTTGTTGTTGCTCGTGAGGGCTTACCAGGTTAATGGTCACATGAAAGCTAAACTTGATCCTTTGGGCTTGGAGGAGAGAGAAATCCCAGATGATTTGGACCCTGCGCTGTATGGGTTCACTGAGGCTGATCTTGACAGGGAGTTCTTTTTAGGGGTTTGGAAGATGGCTGGGTTTCTTTCTGAGAATCGTCCAGTGCAGACCCTTAGGTCCATATTGACCCGGCTTGAGCAGGCCTACTGTGGGAGCATTGGGTATGAGTATATGCATATTGCCGATCGAAACAAATGCAACTGGTTGAGAGATAAGATTGAGACCCCGACGACGATGCAATACAACAGGCAGCGCCGTGAGGTTATTCTTGACAGGCTTATTTGGAGTACACAGTTTGAGAACTTCTTGGCCACTAAGTGGACAACAGCAAAGAGGTTTGGGCTTGAAGGTTGTGAAACTCTCATTCCTGGTATGAAGGAGATGTTTGATAGGGCAGCAGATCTTGGGGTTGAGAGCATAGTTATTGGAATGCCTCACAGAGGAAGATTGAATGTATTGGGTAATGTGGTCCGAAAGCCTTTGCGTCAGATATTTAGTGAATTCAGTGGCGGCACAAAGCCTGTAGATGAAGTTGGGCTTTACACAGGGACTGGTGATGTCAAGTATCACTTGGGAACTTCTTATGATCGACCCACTAGAGGTGGGAAGAGAATTCATCTATCTTTGGTTGCAAATCCAAGTCACTTGGAAGCTGTGGATCCAGTTGTTGTTGGAAAAACTAGAGCAAAGCAGTATTATTCAAATGATGTGGACAGAACCAAGAATATGGGGGTTTTGATCCATGGAGATGGTAGCTTTGCTGGACAAGGTGTGGTCTACGAGACTCTGCATCTTAGTGCTCTTCCTAATTACACCACTGGCGGGACCATACACATTGTGGTGAACAACCAAGTTGCCTTCACGACTGACCCAATGTCTGGTAGATCTTCAGAGTACTGCACTGATGTTGCTAAAGCCTTGAATGCCCCTATCTTCCACGTAAATGCTGATGATATGGAGGCAGTCGTTCATGTCTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTTGTAGTTGATTTAGTTTGTTATCGTCGATTTGGGCATAATGAGATTGATGAGCCGTCATTTACGCAGCCCAAAATGTACAAGGTTATTAGGAGTCATCCAAATCCTCTAACTATTTACAAGAACAAACTTTTAGAATCTGGACAAGTGACCAAAGATGATATTGAGAGGATACAGAGCAAGGTTAATACGATTCTAAACGAAGAAAGGGACTGGCTTTCATCTCATTGGTCTGGGTTCAAGTCACCTGAACAGCTTTCTCGTATCCGTAATACTGGTGTAAAACCAGATATTTTGAAGAATGTTGGCAAAGCGATCACAGCCCTACCTGAAAATTTTAAGCCTCACAGAGCAGTAAAGAAGGTATATGGAGAACGTGCACAAATGATTGAGACTGGTGAAGGCATCGACTGGGCTGTTGGAGAAGCACTTGCCTTTGCTACACTGCTAGTAGAGGGTAACCATGTAAGATTGAGTGGACAGGATGTTGAAAGAGGTACATTTAGTCATCGACATGCTGTACTTCACGACCAGGAAACAGGGGAAAGGTATTGCCCTCTGGATCATGTTATAGCGAACCAAGATGAGGAGATGTTTACAGTTAGCAACAGCTCACTTTCGGAGTTCGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAGAATCCAAATGCATTGGTGATTTGGGAAGCTCAATTTGGTGATTTTGCCAATGGGGCTCAAGTTATATTTGATCAGTTTTTGAGCAGCGGGGAGTCAAAGTGGCTTCGCCAAACTGGGCTTGTTTTACTGCTTCCACATGGTTATGATGGTCAGGGACCTGAACATTCTAGTGCAAGATTGGAGCGATTTCTTCAGATGAGTGATGACAATCCTTATGTCATACCTGAGATGGATCCTACACTCCGGAAGCAAATTCAGGAATGCAATTGGCAGATTGTGAATGTGACCACTCCTGCTAATTATTTCCATGTCCTGCGTCGTCAGATAAACAGGGACTTCCGCAAACCTCTTGTTGTCATGGCTCCTAAAAACTTGCTTCGGCACAAGGACTGCAAATCAAATTTATCTGAGTTTGATGATGTTCAAGGCCACCCAGGGTTTGACAAGCAGGGAACCAGATTTAAGCGCCTCATTAAAGATCAAAATGACCACTCTGATCTGGAGGAGGGTATCAGACGGCTTGTTCTTTGCTCTGGGAAGATTTATTATGAGCTTGATGAAGTGCGAAGAAAGACCAGTGCAAAGGATGTTGCAATATGTAGAGTGGAACAGCTTTGCCCCTTCCCATATGACCTCATCCAGCGAGAGCTGAAGCGATATCCTAATGCTGAGATAGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGGCTATAGCTACATTCAACCTCGCCTATGCACTGCCATGAAGTCGCTGAGCAGAGGAACTATTGACGACATCAAATATATTGGCCGCGCTCCATCTGCTGCCACAGCCACTGGTTTCTATCAAGTTCACCTCAAGGAACAAGCAGACATTGTTCACAAAGCACTGCAGCCTGAGCCAATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

1007

Amino Acids

113.99

Weight (kDa)

6.46

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	64 - 101	7.5e-14	2-oxoglutarate dehydrogenase N-terminus
E1_dh	PF00676	245 - 558	9.1e-59	Dehydrogenase E1 component
Transket_pyr	PF02779	624 - 837	5.9e-49	Transketolase, pyrimidine binding domain
OxoGdeHyase_C	PF16870	860 - 1001	2.4e-49	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB1I	GGYRCC	3 cut(s)	169, 1446, 2811
AccB7I	CCANNNNNTGG	2 cut(s)	768, 1328
AccI	GTMKAC	1 cut(s)	1227
AccII	CGCG	1 cut(s)	2925
AccIII	TCCGGA	1 cut(s)	2373
AciI	CCGC	6 cut(s)	88, 960, 1272, 2217, 2470, 2923
AclWI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2037, 2357, 2370
AcoI	YGGCCR	2 cut(s)	759, 2920
AcsI	RAATTY	6 cut(s)	295, 950, 1062, 1801, 2382, 2530
AcuI	CTGAAG	4 cut(s)	218, 1323, 2306, 2801
AcyI	GRCGYC	1 cut(s)	1447
AdeI	CACNNNGTG	2 cut(s)	768, 1288
AfaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1966, 1989
AfiI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2053
AhdI	GACNNNNNGTC	1 cut(s)	1324
AjnI	CCWGG	7 cut(s)	242, 322, 384, 817, 1998, 2563, 2814
AjuI	GAANNNNNNNTTGG	2 cut(s)	2148, 2180
Alw21I	GWGCWC	2 cut(s)	1252, 1849
Alw26I	GTCTC	3 cut(s)	665, 1226, 1853
Alw44I	GTGCAC	1 cut(s)	1845
AlwI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2037, 2357, 2370
AlwNI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2948
Aor13HI	TCCGGA	1 cut(s)	2373
AoxI	GGCC	6 cut(s)	240, 309, 591, 759, 2557, 2920
ApaLI	GTGCAC	1 cut(s)	1845
ApeKI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2214, 2936, 3004
ApoI	RAATTY	6 cut(s)	295, 950, 1062, 1801, 2382, 2530
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	6 cut(s)	154, 466, 705, 1449, 2598, 2927
AspS9I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2285
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	7 cut(s)	1016, 1303, 1704, 1877, 2158, 2180, 2957
AvaII	GGWCC	5 cut(s)	457, 567, 919, 1275, 2285
AxyI	CCTNAGG	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	174, 1849
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	2 cut(s)	1108, 2362
BanI	GGYRCC	3 cut(s)	169, 1446, 2811
BanII	GRGCYC	1 cut(s)	2188
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	1252, 1849
BbvI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2226, 2923, 3016
BccI	CCATC	6 cut(s)	197, 517, 1193, 2270, 2353, 2938
BceAI	ACGGC	3 cut(s)	690, 1507, 2663
BcgI	CGANNNNNNTGC	4 cut(s)	627, 661, 667, 701
BciT130I	CCWGG	7 cut(s)	244, 324, 386, 819, 2000, 2565, 2816
BciVI	GTATCC	2 cut(s)	1632, 1742
BclI	TGATCA	1 cut(s)	2200
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	665, 1226, 1853
BfaI	CTAG	5 cut(s)	180, 1047, 1131, 1916, 2298
BfmI	CTRYAG	3 cut(s)	972, 2842, 3002
BfoI	RGCGCY	3 cut(s)	706, 1450, 2599
BfuI	GTATCC	2 cut(s)	1632, 1742
BglI	GCCNNNNNGGC	1 cut(s)	2183
BglII	AGATCT	2 cut(s)	850, 1334
BlpI	GCTNAGC	1 cut(s)	2885
BmcAI	AGTACT	1 cut(s)	1346
Bme1390I	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2000, 2565, 2816
Bme18I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2285
BmeRI	GACNNNNNGTC	1 cut(s)	1324
BmgT120I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2285
BmrFI	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2000, 2565, 2816
BmrI	ACTGGG	2 cut(s)	1888, 2253
BmsI	GCATC	3 cut(s)	675, 1249, 1881
BmuI	ACTGGG	2 cut(s)	1888, 2253
BpmI	CTGGAG	1 cut(s)	2651
Bpu10I	CCTNAGC	1 cut(s)	3009
Bpu1102I	GCTNAGC	1 cut(s)	2885
BpuEI	CTTGAG	3 cut(s)	605, 2172, 2954
BpuMI	CCSGG	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	3018
BsaAI	YACGTR	1 cut(s)	1390
BsaBI	GATNNNNATC	2 cut(s)	55, 2337
BsaHI	GRCGYC	1 cut(s)	1447
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	243, 323, 1192, 2563, 2564
BsaWI	WCCGGW	2 cut(s)	166, 2373
BsaXI	ACNNNNNCTCC	2 cut(s)	2213, 2243
Bsc4I	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2053
Bse118I	RCCGGY	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	563
Bse8I	GATNNNNATC	2 cut(s)	55, 2337
BseAI	TCCGGA	1 cut(s)	2373
BseBI	CCWGG	7 cut(s)	244, 324, 386, 819, 2000, 2565, 2816
BseCI	ATCGAT	1 cut(s)	3018
BseDI	CCNNGG	5 cut(s)	243, 323, 1192, 2563, 2564
BseGI	GGATG	5 cut(s)	208, 1564, 1957, 2722, 2766
BseJI	GATNNNNATC	2 cut(s)	55, 2337
BseLI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2053
BseMII	CTCAG	8 cut(s)	471, 531, 1431, 2346, 2529, 2790, 2876, 3000
BseRI	GAGGAG	3 cut(s)	446, 2069, 2648
BseSI	GKGCMC	2 cut(s)	174, 1849
BseXI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2226, 2923, 3016
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	575, 1333
Bsh1236I	CGCG	1 cut(s)	2925
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	6 cut(s)	242, 311, 593, 761, 2559, 2922
BshNI	GGYRCC	3 cut(s)	169, 1446, 2811
BshVI	ATCGAT	1 cut(s)	3018
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	1252, 1849
BsiSI	CCGG	4 cut(s)	155, 167, 580, 2374
BslFI	GGGAC	5 cut(s)	1012, 1288, 1691, 2298, 2477
BslI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2053
BsmAI	GTCTC	3 cut(s)	665, 1226, 1853
BsmFI	GGGAC	5 cut(s)	1012, 1288, 1691, 2298, 2477
BsmI	GAATGC	3 cut(s)	885, 1378, 2396
BsnI	GGCC	6 cut(s)	242, 311, 593, 761, 2559, 2922
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	174, 1252, 1849, 2188
Bsp13I	TCCGGA	1 cut(s)	2373
Bsp1407I	TGTACA	1 cut(s)	1545
Bsp1720I	GCTNAGC	1 cut(s)	2885
Bsp19I	CCATGG	1 cut(s)	1192
BspACI	CCGC	6 cut(s)	88, 960, 1272, 2217, 2470, 2923
BspANI	GGCC	6 cut(s)	242, 311, 593, 761, 2559, 2922
BspCNI	CTCAG	8 cut(s)	472, 532, 1432, 2347, 2530, 2791, 2877, 3001
BspDI	ATCGAT	1 cut(s)	3018
BspEI	TCCGGA	1 cut(s)	2373
BspFNI	CGCG	1 cut(s)	2925
BspMAI	CTGCAG	1 cut(s)	3006
BspPI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2037, 2357, 2370
BspQI	GCTCTTC	2 cut(s)	1257, 2814
BspT107I	GGYRCC	3 cut(s)	169, 1446, 2811
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	1545
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	243, 323, 1192, 2563, 2564
BssNI	GRCGYC	1 cut(s)	1447
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	7 cut(s)	244, 324, 386, 819, 2000, 2565, 2816
Bst4CI	ACNGT	4 cut(s)	79, 599, 744, 2068
Bst6I	CTCTTC	3 cut(s)	1052, 1257, 2814
BstACI	GRCGYC	1 cut(s)	1447
BstAPI	GCANNNNNTGC	2 cut(s)	38, 149
BstAUI	TGTACA	1 cut(s)	1545
BstBAI	YACGTR	1 cut(s)	1390
BstC8I	GCNNGC	3 cut(s)	39, 591, 1434
BstDSI	CCRYGG	1 cut(s)	1192
BstEII	GGTNACC	1 cut(s)	1925
BstENI	CCTNNNNNAGG	1 cut(s)	888
BstF5I	GGATG	5 cut(s)	208, 1564, 1957, 2722, 2766
BstFNI	CGCG	1 cut(s)	2925
BstH2I	RGCGCY	3 cut(s)	706, 1450, 2599
BstHHI	GCGC	6 cut(s)	154, 466, 705, 1449, 2598, 2927
BstMAI	GTCTC	3 cut(s)	665, 1226, 1853
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1787, 2183, 2933, 2942, 3010
BstNI	CCWGG	7 cut(s)	244, 324, 386, 819, 2000, 2565, 2816
BstNSI	RCATGY	1 cut(s)	1985
BstPI	GGTNACC	1 cut(s)	1925
BstSCI	CCNGG	8 cut(s)	242, 322, 384, 578, 817, 1998, 2563, 2814
BstSFI	CTRYAG	3 cut(s)	972, 2842, 3002
BstSLI	GKGCMC	2 cut(s)	174, 1849
BstUI	CGCG	1 cut(s)	2925
BstV1I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2226, 2923, 3016
BstX2I	RGATCY	4 cut(s)	850, 1108, 1334, 2362
BstXI	CCANNNNNNTGG	3 cut(s)	392, 1177, 1199
BstYI	RGATCY	4 cut(s)	850, 1108, 1334, 2362
Bsu15I	ATCGAT	1 cut(s)	3018
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	2 cut(s)	1632, 1742
BsuRI	GGCC	6 cut(s)	242, 311, 593, 761, 2559, 2922
BsuTUI	ATCGAT	1 cut(s)	3018
BtgI	CCRYGG	1 cut(s)	1192
BtsCI	GGATG	5 cut(s)	208, 1564, 1957, 2722, 2766
BtsI	GCAGTG	4 cut(s)	220, 1910, 2868, 2999
Cac8I	GCNNGC	3 cut(s)	39, 591, 1434
CaiI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2948
CfoI	GCGC	6 cut(s)	154, 466, 705, 1449, 2598, 2927
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2285
ClaI	ATCGAT	1 cut(s)	3018
CseI	GACGC	2 cut(s)	923, 2435
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	6 cut(s)	112, 738, 1345, 1546, 1965, 1988
CspCI	CAANNNNNGTGG	2 cut(s)	1140, 1175
CviQI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1965, 1988
DinI	GGCGCC	1 cut(s)	1448
DraIII	CACNNNGTG	2 cut(s)	768, 1288
DrdI	GACNNNNNNGTC	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	1324
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	2 cut(s)	759, 2920
Eam1104I	CTCTTC	3 cut(s)	1052, 1257, 2814
Eam1105I	GACNNNNNGTC	1 cut(s)	1324
EarI	CTCTTC	3 cut(s)	1052, 1257, 2814
Eco130I	CCWWGG	1 cut(s)	1192
Eco147I	AGGCCT	2 cut(s)	311, 593
Eco24I	GRGCYC	1 cut(s)	2188
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	2789
Eco47I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2285
Eco57I	CTGAAG	4 cut(s)	218, 1323, 2306, 2801
Eco81I	CCTNAGG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	1925
EcoNI	CCTNNNNNAGG	1 cut(s)	888
EcoO109I	RGGNCCY	2 cut(s)	240, 2285
EcoO65I	GGTNACC	1 cut(s)	1925
EcoRI	GAATTC	2 cut(s)	950, 1062
EcoRII	CCWGG	7 cut(s)	242, 322, 384, 817, 1998, 2563, 2814
EcoRV	GATATC	1 cut(s)	2789
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	2 cut(s)	627, 2143
EcoT38I	GRGCYC	1 cut(s)	2188
EgeI	GGCGCC	1 cut(s)	1448
EheI	GGCGCC	1 cut(s)	1448
ErhI	CCWWGG	1 cut(s)	1192
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 972, 1004, 1004, 1036
FaqI	GGGAC	5 cut(s)	1012, 1288, 1691, 2298, 2477
FauI	CCCGC	3 cut(s)	81, 1265, 2210
FauNDI	CATATG	1 cut(s)	2758
FbaI	TGATCA	1 cut(s)	2200
FblI	GTMKAC	1 cut(s)	1227
FokI	GGATG	5 cut(s)	215, 1551, 1964, 2729, 2753
FriOI	GRGCYC	1 cut(s)	2188
FspBI	CTAG	5 cut(s)	180, 1047, 1131, 1916, 2298
GlaI	GCGC	6 cut(s)	153, 465, 704, 1448, 2597, 2926
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	2651
HaeII	RGCGCY	3 cut(s)	706, 1450, 2599
HaeIII	GGCC	6 cut(s)	242, 311, 593, 761, 2559, 2922
HapII	CCGG	4 cut(s)	155, 167, 580, 2374
HgaI	GACGC	2 cut(s)	923, 2435
HhaI	GCGC	6 cut(s)	154, 466, 705, 1449, 2598, 2927
Hin1I	GRCGYC	1 cut(s)	1447
Hin6I	GCGC	6 cut(s)	152, 464, 703, 1447, 2596, 2925
HinP1I	GCGC	6 cut(s)	152, 464, 703, 1447, 2596, 2925
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	9 cut(s)	106, 272, 544, 1234, 1561, 1604, 1660, 2131, 2222
HpaII	CCGG	4 cut(s)	155, 167, 580, 2374
HphI	GGTGA	7 cut(s)	1016, 1303, 1704, 1877, 2158, 2180, 2957
Hpy99I	CGWCG	6 cut(s)	103, 322, 682, 685, 1497, 2451
HpyAV	CCTTC	8 cut(s)	133, 221, 791, 820, 1318, 1822, 1862, 2761
HpyCH4III	ACNGT	4 cut(s)	79, 599, 744, 2068
HpyCH4IV	ACGT	3 cut(s)	317, 1389, 1843
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1787, 2183, 2933, 2942, 3010
HpySE526I	ACGT	3 cut(s)	317, 1389, 1843
Hsp92I	GRCGYC	1 cut(s)	1447
HspAI	GCGC	6 cut(s)	152, 464, 703, 1447, 2596, 2925
KasI	GGCGCC	1 cut(s)	1446
Kpn2I	TCCGGA	1 cut(s)	2373
Ksp22I	TGATCA	1 cut(s)	2200
LguI	GCTCTTC	2 cut(s)	1257, 2814
LmnI	GCTCC	4 cut(s)	603, 2311, 2497, 2932
Lsp1109I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2226, 2923, 3016
LweI	GCATC	3 cut(s)	675, 1249, 1881
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	5 cut(s)	180, 1047, 1131, 1916, 2298
MaeII	ACGT	3 cut(s)	317, 1389, 1843
MaeIII	GTNAC	8 cut(s)	79, 395, 1091, 1615, 1710, 1925, 2117, 2413
MfeI	CAATTG	1 cut(s)	2395
MflI	RGATCY	4 cut(s)	850, 1108, 1334, 2362
MhlI	GDGCHC	4 cut(s)	174, 1252, 1849, 2188
MlsI	TGGCCA	1 cut(s)	761
MluNI	TGGCCA	1 cut(s)	761
Mly113I	GGCGCC	1 cut(s)	1447
MlyI	GAGTC	4 cut(s)	281, 1228, 1570, 2231
MmeI	TCCRAC	2 cut(s)	1102, 1867
Mox20I	TGGCCA	1 cut(s)	761
Mph1103I	ATGCAT	2 cut(s)	627, 2143
MroI	TCCGGA	1 cut(s)	2373
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	6 cut(s)	390, 1653, 1806, 2592, 2604, 3022
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	1439, 2217
MspI	CCGG	4 cut(s)	155, 167, 580, 2374
MspR9I	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2000, 2565, 2816
MunI	CAATTG	1 cut(s)	2395
Mva1269I	GAATGC	3 cut(s)	885, 1378, 2396
MvaI	CCWGG	7 cut(s)	244, 324, 386, 819, 2000, 2565, 2816
MvnI	CGCG	1 cut(s)	2925
MwoI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1787, 2183, 2933, 2942, 3010
NarI	GGCGCC	1 cut(s)	1447
NciI	CCSGG	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	1192
NdeI	CATATG	1 cut(s)	2758
NmuCI	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1710, 2413
NsiI	ATGCAT	2 cut(s)	627, 2143
NspI	RCATGY	1 cut(s)	1985
PasI	CCCWGGG	1 cut(s)	2564
PceI	AGGCCT	2 cut(s)	311, 593
PciSI	GCTCTTC	2 cut(s)	1257, 2814
PctI	GAATGC	3 cut(s)	885, 1378, 2396
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2131
PflMI	CCANNNNNTGG	2 cut(s)	768, 1328
Ple19I	CGATCG	1 cut(s)	637
PleI	GAGTC	4 cut(s)	280, 1228, 1569, 2230
PluTI	GGCGCC	1 cut(s)	1450
PpsI	GAGTC	4 cut(s)	280, 1228, 1569, 2230
Ppu21I	YACGTR	1 cut(s)	1390
PpuMI	RGGWCCY	1 cut(s)	2285
Psp5II	RGGWCCY	1 cut(s)	2285
Psp6I	CCWGG	7 cut(s)	242, 322, 384, 817, 1998, 2563, 2814
PspEI	GGTNACC	1 cut(s)	1925
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	7 cut(s)	242, 322, 384, 817, 1998, 2563, 2814
PspPI	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2285
PspPPI	RGGWCCY	1 cut(s)	2285
PstI	CTGCAG	1 cut(s)	3006
PstNI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2948
PsuI	RGATCY	4 cut(s)	850, 1108, 1334, 2362
PvuI	CGATCG	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1966, 1989
RsaNI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1965, 1988
SapI	GCTCTTC	2 cut(s)	1257, 2814
SaqAI	TTAA	6 cut(s)	390, 1653, 1806, 2592, 2604, 3022
Sau96I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2285
ScaI	AGTACT	1 cut(s)	1346
SchI	GAGTC	4 cut(s)	281, 1228, 1570, 2231
ScrFI	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2000, 2565, 2816
SduI	GDGCHC	4 cut(s)	174, 1252, 1849, 2188
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	675, 1249, 1881
SfcI	CTRYAG	3 cut(s)	972, 2842, 3002
SfoI	GGCGCC	1 cut(s)	1448
SinI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2285
SmlI	CTYRAG	3 cut(s)	584, 2187, 2969
SmoI	CTYRAG	3 cut(s)	584, 2187, 2969
SseBI	AGGCCT	2 cut(s)	311, 593
SsiI	CCGC	6 cut(s)	88, 960, 1272, 2217, 2470, 2923
SspDI	GGCGCC	1 cut(s)	1446
SspMI	CTAG	5 cut(s)	180, 1047, 1131, 1916, 2298
StuI	AGGCCT	2 cut(s)	311, 593
StyD4I	CCNGG	8 cut(s)	242, 322, 384, 578, 817, 1998, 2563, 2814
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	4 cut(s)	79, 599, 744, 2068
TaiI	ACGT	3 cut(s)	320, 1392, 1846
TaqI	TCGA	8 cut(s)	59, 137, 637, 1039, 1495, 1875, 1978, 3018
TatI	WGTACW	4 cut(s)	737, 1344, 1545, 1987
TauI	GCSGC	2 cut(s)	963, 2925
TfiI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2131
Tru1I	TTAA	6 cut(s)	390, 1653, 1806, 2592, 2604, 3022
Tru9I	TTAA	6 cut(s)	390, 1653, 1806, 2592, 2604, 3022
TseFI	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1710, 2413
TseI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2214, 2936, 3004
Tsp45I	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1710, 2413
TspDTI	ATGAA	9 cut(s)	416, 839, 993, 1055, 1409, 1677, 2703, 2843, 2891
TspGWI	ACGGA	2 cut(s)	87, 1724
Van91I	CCANNNNNTGG	2 cut(s)	768, 1328
VneI	GTGCAC	1 cut(s)	1845
VpaK11BI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2285
XagI	CCTNNNNNAGG	1 cut(s)	888
XapI	RAATTY	6 cut(s)	295, 950, 1062, 1801, 2382, 2530
XceI	RCATGY	1 cut(s)	1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XmiI	GTMKAC	1 cut(s)	1227
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	5 cut(s)	180, 1047, 1131, 1916, 2298
ZrmI	AGTACT	1 cut(s)	1346
Zsp2I	ATGCAT	2 cut(s)	627, 2143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.