Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

33726077 .. 33727285

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1281500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTGAGACTGGTGAAGGAATTGATTGGGCAGTTGTGGAAGCACTTGCCTTTGCTACATTAGTTGTAGAAGGTAATCATGTTCGACTGAGTGGTCAGGATGTTGAAAGAGGTACATTTAGTCATCGTCATTCTGTAGTTCATGACCAGGAGACTGGAGAAAAGTATTGCCCTCTTGGCAATATTATGGCGGACCAAGATGATGAACTGTTTACAGTTAGCAACAGCTCACTCTCGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTATTTGATGGAAAGTCCAAACTCATTAGTAATCTGGGAAGCACGGTTTGACAACTTTTCCAATGGAGCTCAAGTTATATTTGATCAGTTTTTGAGTGGTGGGGAGTCCAAGTGGCTTCGTCAAACTGGGCTTGTTGTGTTGCTTCCTCATGGTTACATGGGCCAGGGCCCTGAACATTCTAGTGTACGACTGGAACGATTTCTACAGATGAGTGATGACAATTCTTTTGTCATACCTGAGATGGATTCCACACATCGGAAGCAAATTCAGGAATGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

183

Amino Acids

20.37

Weight (kDa)

4.55

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	7 - 169	2.6e-35	Transketolase, pyrimidine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	93
AciI	CCGC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	531
AfaI	GTAC	2 cut(s)	115, 453
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	107, 260
AjnI	CCWGG	2 cut(s)	147, 429
AluBI	AGCT	2 cut(s)	228, 335
AluI	AGCT	2 cut(s)	228, 335
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	2, 146
AoxI	GGCC	2 cut(s)	427, 433
ApaI	GGGCCC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	4 cut(s)	193, 427, 433, 434
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	437
BanII	GRGCYC	2 cut(s)	337, 437
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	2 cut(s)	268, 502
BciT130I	CCWGG	2 cut(s)	149, 431
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	2, 146
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	135, 470
BglI	GCCNNNNNGGC	1 cut(s)	177
Bme1390I	CCNGG	2 cut(s)	149, 431
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	4 cut(s)	193, 427, 433, 434
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	149, 431
BmrI	ACTGGG	1 cut(s)	402
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	4 cut(s)	16, 160, 397, 462
BseBI	CCWGG	2 cut(s)	149, 431
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	80, 495
BseNI	ACTGG	4 cut(s)	16, 160, 397, 462
BseSI	GKGCMC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	429, 435
BsiHKAI	GWGCWC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	2 cut(s)	2, 146
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	429, 435
Bsp120I	GGGCCC	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	337, 437
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	429, 435
BspCNI	CTCAG	2 cut(s)	81, 496
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	435
BsrI	ACTGG	4 cut(s)	16, 160, 397, 462
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	149, 431
Bst4CI	ACNGT	3 cut(s)	210, 217, 312
BstDEI	CTNAG	2 cut(s)	89, 504
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	2, 146
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	2 cut(s)	149, 431
BstSCI	CCNGG	2 cut(s)	147, 429
BstSFI	CTRYAG	2 cut(s)	135, 470
BstSLI	GKGCMC	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	429, 435
BtsCI	GGATG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	4 cut(s)	193, 427, 433, 434
Csp6I	GTAC	2 cut(s)	114, 452
CviAII	CATG	4 cut(s)	80, 143, 416, 424
CviJI	RGCY	6 cut(s)	228, 335, 382, 397, 429, 435
CviKI_1	RGCY	6 cut(s)	228, 335, 382, 397, 429, 435
CviQI	GTAC	2 cut(s)	114, 452
DdeI	CTNAG	2 cut(s)	89, 504
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	93
DseDI	GACNNNNNNGTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	335
Eco24I	GRGCYC	2 cut(s)	337, 437
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	335
EcoO109I	RGGNCCY	2 cut(s)	433, 434
EcoRII	CCWGG	2 cut(s)	147, 429
EcoT38I	GRGCYC	2 cut(s)	337, 437
FaeI	CATG	4 cut(s)	83, 146, 419, 427
FaiI	YATR	7 cut(s)	81, 144, 188, 344, 417, 425, 500
FatI	CATG	4 cut(s)	79, 142, 415, 423
FbaI	TGATCA	1 cut(s)	349
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	337, 437
FspBI	CTAG	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	429, 435
Hin1II	CATG	4 cut(s)	83, 146, 419, 427
HinfI	GANTC	2 cut(s)	371, 512
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	213, 452
Hpy188I	TCNGA	2 cut(s)	238, 525
Hpy188III	TCNNGA	3 cut(s)	98, 143, 536
Hpy8I	GTNNAC	2 cut(s)	213, 452
HpyAV	CCTTC	2 cut(s)	11, 65
HpyCH4III	ACNGT	3 cut(s)	210, 217, 312
HpyCH4V	TGCA	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	89, 504
Hsp92II	CATG	4 cut(s)	83, 146, 419, 427
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MhlI	GDGCHC	2 cut(s)	337, 437
MluCI	AATT	5 cut(s)	21, 260, 487, 531, 544
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	3 cut(s)	104, 183, 423
MroXI	GAANNNNTTC	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	447
MspR9I	CCNGG	2 cut(s)	149, 431
Mva1269I	GAATGC	1 cut(s)	545
MvaI	CCWGG	2 cut(s)	149, 431
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	4 cut(s)	83, 146, 419, 427
NlaIV	GGNNCC	1 cut(s)	435
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	512
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	147, 429
PspGI	CCWGG	2 cut(s)	147, 429
PspN4I	GGNNCC	1 cut(s)	435
PspOMI	GGGCCC	1 cut(s)	433
PspPI	GGNCC	4 cut(s)	193, 427, 433, 434
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
RsaI	GTAC	2 cut(s)	115, 453
RsaNI	GTAC	2 cut(s)	114, 452
RseI	CAYNNNNRTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	337
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	4 cut(s)	193, 427, 433, 434
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	149, 431
SduI	GDGCHC	2 cut(s)	337, 437
SetI	ASST	5 cut(s)	76, 115, 230, 337, 505
SfcI	CTRYAG	2 cut(s)	135, 470
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	5 cut(s)	21, 260, 487, 531, 544
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	2 cut(s)	147, 429
TaaI	ACNGT	3 cut(s)	210, 217, 312
TaqI	TCGA	1 cut(s)	85
TasI	AATT	5 cut(s)	21, 260, 487, 531, 544
TfiI	GAWTC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	131, 219
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.