Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265029.1

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 798

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265029.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggagaatccaaatgcgttggtactttgggaagctcaatttggtgattttgccaatggagctcaagttatatttgatcagtttttgagcagtggggagtcaaagtggcttcgtcaaactgggcttgttgtactgcttccacacagttatgctggtcagggacctgaacattcaagtgcccgattggagcgatttcttcagatgagtgatgacaatccttacctcatacctgagatggatcatacacatcggaagcaaattcaggaatgtaattggcagataaacagggagttccgcaagcctcttgttgtgatggctcctaaaaacttgctccgacacaaagactgcaaatcaaatttatccgagtttgatgatgttgaaggccacccaggttttgacaagcaggggaccagatttaagcgccttataaaggaccagaatgatcactctgatctggaggagggtattagacggcttgttctttgctccggaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

165

Amino Acids

19.06

Weight (kDa)

6.16

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	488
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	258, 355
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	24, 132
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	174, 380
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
AluBI	AGCT	2 cut(s)	35, 62
AluI	AGCT	2 cut(s)	35, 62
Alw21I	GWGCWC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	246
Aor13HI	TCCGGA	1 cut(s)	488
AoxI	GGCC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	258, 355
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	161, 408, 433
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	161, 408, 433
BaeGI	GKGCMC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BccI	CCATC	2 cut(s)	229, 307
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	2 cut(s)	76, 442
BfoI	RGCGCY	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	3 cut(s)	161, 408, 433
BmgT120I	GGNCC	3 cut(s)	161, 408, 433
BmiI	GGNNCC	3 cut(s)	162, 318, 409
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	174, 421
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	2 cut(s)	174, 421
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	64, 181
Bsp13I	TCCGGA	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	76, 238, 442, 451
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	488
BspLI	GGNNCC	3 cut(s)	162, 318, 409
BspPI	GGATC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	76, 238, 442, 451
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	4 cut(s)	79, 241, 445, 454
BstMBI	GATC	4 cut(s)	76, 238, 442, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	384
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	299
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	161, 408, 433
Csp6I	GTAC	2 cut(s)	23, 131
CviJI	RGCY	8 cut(s)	35, 62, 109, 124, 301, 317, 384, 475
CviKI_1	RGCY	8 cut(s)	35, 62, 109, 124, 301, 317, 384, 475
CviQI	GTAC	2 cut(s)	23, 131
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	78, 240, 444, 453
DpnII	GATC	4 cut(s)	76, 238, 442, 451
Ecl136II	GAGCTC	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	3 cut(s)	161, 408, 433
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	64
FaiI	YATR	5 cut(s)	71, 150, 227, 243, 428
FaqI	GGGAC	2 cut(s)	174, 421
FbaI	TGATCA	2 cut(s)	76, 442
FriOI	GRGCYC	1 cut(s)	64
GlaI	GCGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	423
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	7, 98
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	5 cut(s)	201, 252, 335, 364, 451
Hpy188III	TCNNGA	3 cut(s)	263, 455, 489
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	421
Kpn2I	TCCGGA	1 cut(s)	488
Ksp22I	TGATCA	2 cut(s)	76, 442
Kzo9I	GATC	4 cut(s)	76, 238, 442, 451
LmnI	GCTCC	5 cut(s)	59, 187, 322, 336, 491
MalI	GATC	4 cut(s)	78, 240, 444, 453
MboI	GATC	4 cut(s)	76, 238, 442, 451
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	64, 181
MluCI	AATT	4 cut(s)	38, 258, 271, 355
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	233, 312, 451, 454
MroI	TCCGGA	1 cut(s)	488
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	2 cut(s)	147, 174
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	4 cut(s)	76, 238, 442, 451
NlaIV	GGNNCC	3 cut(s)	162, 318, 409
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	162, 318, 409
PspPI	GGNCC	3 cut(s)	161, 408, 433
PspPPI	RGGWCCY	1 cut(s)	161
RsaI	GTAC	2 cut(s)	24, 132
RsaNI	GTAC	2 cut(s)	23, 131
RseI	CAYNNNNRTG	2 cut(s)	147, 174
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	76, 238, 442, 451
Sau96I	GGNCC	3 cut(s)	161, 408, 433
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	64, 181
SetI	ASST	6 cut(s)	37, 64, 166, 225, 232, 394
SinI	GGWCC	3 cut(s)	161, 408, 433
SmiMI	CAYNNNNRTG	2 cut(s)	147, 174
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	4 cut(s)	38, 258, 271, 355
SsiI	CCGC	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	4 cut(s)	38, 258, 271, 355
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	97
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	161, 408, 433
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	2 cut(s)	258, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.