Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

44590235 .. 44591479

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGCAGAGACAAAACGACGCCGCTTTCAGTGCCGGTAGGCTACAAGTTCCACCCCACCGAAGAGGAGCTTCTGACTCACTATTTGAAGAAGAAGATTCATGGTGGCAATGATTCCAAAATCAACCAAATCATCCCTGAAATAGACCTCTACAAATACGAGCCGGCTGAGCTTCCTGCTTTGTTGGGGACTGAGACAGAGGCTCAGGACATGGAGTGGCCAGGAGCATGGCATGGGATTAAAGCTCGACGATCCAAAGCTGTGATTGGGAAGAAGAGGACTCTGACATTTTACCATGGCCGTGTGCCGAAATCGAAGAAGAGCAGCTGGGGCGACTTTGTTATCTGTCGCTTGAAGAATAAATCAGATAAGATGGATTTTTCAGTCAATGATGAAGGGGAACCGGTTAGCGCGAGTCTGTACAATTGGGAAAATCAAGCTGTTGATGAAATGAATCAAGAGGCAAACGAAAATGATGAATCGTATTTTCATCAACCTCAGCCTCTGGATGACTGCTGCTCCTCAGCACTGCAGTCACCAACATCCCTAGAGCTGGAAGCTGTTCTGCAAACCAATGGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAAAGATTATTGTCTTCTAGACTGGAATGAAGTTTCAACCTGTGATAAATATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

4.9

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 110	2.3e-14	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	413
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	218, 298
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgeI	ACCGGT	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	88, 355, 657
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	8 cut(s)	70, 172, 245, 260, 327, 440, 553, 560
AluI	AGCT	8 cut(s)	70, 172, 245, 260, 327, 440, 553, 560
Alw26I	GTCTC	2 cut(s)	3, 188
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	1 cut(s)	505
AoxI	GGCC	2 cut(s)	218, 298
ApeKI	GCWGC	2 cut(s)	324, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
AsiGI	ACCGGT	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	528, 600
BalI	TGGCCA	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	626
BbvCI	CCTCAGC	2 cut(s)	498, 523
BbvI	GCAGC	2 cut(s)	336, 503
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	3, 188
BfaI	CTAG	2 cut(s)	548, 638
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	3 cut(s)	23, 325, 517
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	3 cut(s)	24, 326, 518
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	626
Bpu10I	CCTNAGC	3 cut(s)	204, 498, 523
Bpu1102I	GCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	3 cut(s)	34, 163, 403
Bse1I	ACTGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	3 cut(s)	132, 514, 542
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	5 cut(s)	159, 183, 218, 512, 537
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	2 cut(s)	80, 511
BseXI	GCAGC	2 cut(s)	336, 503
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	220, 300
BshTI	ACCGGT	1 cut(s)	403
BsiSI	CCGG	3 cut(s)	35, 164, 404
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	3, 188
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	220, 300
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	251
Bsp1720I	GCTNAGC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	220, 300
BspCNI	CTCAG	5 cut(s)	160, 184, 217, 511, 536
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	534
BspPI	GGATC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	3 cut(s)	34, 163, 403
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	647
BssAI	RCCGGY	3 cut(s)	34, 163, 403
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	251
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	222
Bst6I	CTCTTC	3 cut(s)	57, 269, 314
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	5 cut(s)	168, 192, 204, 498, 523
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	3 cut(s)	132, 514, 542
BstFNI	CGCG	1 cut(s)	413
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	3, 188
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 169, 330
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	530
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	336, 503
BstV2I	GAAGAC	1 cut(s)	626
BstXI	CCANNNNNNTGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	220, 300
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	3 cut(s)	132, 514, 542
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	36, 527
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	505
CfoI	GCGC	1 cut(s)	413
Cfr10I	RCCGGY	3 cut(s)	34, 163, 403
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	421
CspAI	ACCGGT	1 cut(s)	403
CviAII	CATG	5 cut(s)	101, 211, 228, 233, 296
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	5 cut(s)	168, 192, 204, 498, 523
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	218, 298
Eam1104I	CTCTTC	3 cut(s)	57, 269, 314
EarI	CTCTTC	3 cut(s)	57, 269, 314
Eco130I	CCWWGG	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	5 cut(s)	104, 214, 231, 236, 299
FaiI	YATR	8 cut(s)	102, 212, 229, 234, 297, 672, 674, 676
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	5 cut(s)	100, 210, 227, 232, 295
Fnu4HI	GCNGC	3 cut(s)	23, 325, 517
FokI	GGATG	3 cut(s)	119, 521, 529
Fsp4HI	GCNGC	3 cut(s)	23, 325, 517
FspBI	CTAG	2 cut(s)	548, 638
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	23, 325, 517
GsaI	CCCAGC	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	220, 300
HapII	CCGG	3 cut(s)	35, 164, 404
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	104, 214, 231, 236, 299
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	7 cut(s)	76, 97, 113, 280, 415, 454, 479
HpaII	CCGG	3 cut(s)	35, 164, 404
HphI	GGTGA	2 cut(s)	528, 600
Hpy188I	TCNGA	3 cut(s)	75, 285, 367
Hpy188III	TCNNGA	4 cut(s)	206, 458, 506, 638
Hpy99I	CGWCG	2 cut(s)	22, 252
HpyAV	CCTTC	1 cut(s)	389
HpyCH4V	TGCA	3 cut(s)	532, 568, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 169, 330
HpyF3I	CTNAG	5 cut(s)	168, 192, 204, 498, 523
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	104, 214, 231, 236, 299
HspAI	GCGC	1 cut(s)	411
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	251
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	3 cut(s)	67, 224, 524
Lsp1109I	GCAGC	2 cut(s)	336, 503
MaeI	CTAG	2 cut(s)	548, 638
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MfeI	CAATTG	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	220
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	220
MlyI	GAGTC	3 cut(s)	70, 274, 424
MnlI	CCTC	8 cut(s)	58, 158, 193, 270, 454, 507, 513, 532
Mox20I	TGGCCA	1 cut(s)	220
MroNI	GCCGGC	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	220
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	3 cut(s)	35, 164, 404
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	222
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	31, 169, 330
NaeI	GCCGGC	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	251
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	5 cut(s)	104, 214, 231, 236, 299
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	4 cut(s)	97, 113, 454, 479
PinAI	ACCGGT	1 cut(s)	403
PkrI	GCNGC	3 cut(s)	24, 326, 518
PleI	GAGTC	3 cut(s)	70, 274, 423
PpsI	GAGTC	3 cut(s)	70, 274, 423
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	534
PstNI	CAGNNNCTG	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	23, 325, 517
Sau3AI	GATC	1 cut(s)	251
SchI	GAGTC	3 cut(s)	70, 274, 424
ScrFI	CCNGG	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	548, 638
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	2 cut(s)	247, 314
TasI	AATT	1 cut(s)	424
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	4 cut(s)	97, 113, 454, 479
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	36, 534
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	324, 516
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	7 cut(s)	89, 408, 462, 467, 479, 492, 663
TspRI	CASTG	2 cut(s)	36, 534
XbaI	TCTAGA	1 cut(s)	637
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	2 cut(s)	548, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.