Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

44559604 .. 44560974

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0326000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCTGCAGCGACTTCACAGTTCCGCCGGGATACCGATTCCATCCCACCGACGAGAAGCTGCTTAGTGACTTGGAGAAGAAGAATCAGTGCAAGGACTCTGAGATCACCACCATCATCCCTGAAATCGATGTGTGCAAGAACGAGCCTCGCAAGTTACCAGAGTCTTGGGACAGTCAGGGCAAGTGGTACTTCTTCACTCCGCGTGAATACAAGTACAATAACAGCAGACGCTCCAACAGGACTACAGGGGAAGGGTTCTGGAAGATCACAGGCAAGGACCGCGACATCAAGGCCCCTGGCTCCAAAGCTGTGATTGGGAGAAAGAGGACCTTGACCTTCTACAAACGTGGAGTGCCGAAACCCCAGAAGACTGGCTGGGTCATTCATGAGTTTTATCTCATTGAGGCACATTCTAATCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTATAAGTCAGACAACTCTGATCATGATAAGGATGCCCCATTCTTCGATCGAGGTAGCACTAGCTGCAGTATGGCCTCCAATGTTGAAAATCAAGCTGAAGAAAATTGGGCATTAATTGAGCAGGTTAATGTTGTTCCAATTCACAATGGAAATGATGATGAAGCTCAAACTGGTGGTGGTATTATTACACAAGAAGAGGAATACCTGGCTTTAAAGGAACTGCAAGATGCTCTTCAGATTCCCATTGGCAATCCTCATGAATTCCAAGGCACGCAAACTGATCCTTGTCGTATAGATAAGAATGATCTTTCTGTTGAAGGAATATCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

5.49

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 133	8.2e-36	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	574
AccII	CGCG	2 cut(s)	205, 285
AciI	CCGC	3 cut(s)	26, 203, 283
AclWI	GGATC	1 cut(s)	737
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	2 cut(s)	579, 680
AfaI	GTAC	2 cut(s)	191, 218
AgsI	TTSAA	3 cut(s)	460, 548, 779
AjnI	CCWGG	2 cut(s)	298, 666
AluBI	AGCT	6 cut(s)	6, 61, 311, 525, 557, 626
AluI	AGCT	6 cut(s)	6, 61, 311, 525, 557, 626
AlwI	GGATC	1 cut(s)	737
AoxI	GGCC	2 cut(s)	294, 534
ApeKI	GCWGC	4 cut(s)	6, 9, 61, 525
ApoI	RAATTY	1 cut(s)	722
AseI	ATTAAT	1 cut(s)	575
AspS9I	GGNCC	3 cut(s)	280, 295, 330
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	280, 330
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	3 cut(s)	21, 48, 512
BccI	CCATC	2 cut(s)	51, 122
BciT130I	CCWGG	2 cut(s)	300, 668
BciVI	GTATCC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	30
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	3 cut(s)	7, 246, 526
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	26
BisI	GCNGC	4 cut(s)	7, 10, 62, 526
BlsI	GCNGC	4 cut(s)	8, 11, 63, 527
Bme1390I	CCNGG	3 cut(s)	30, 300, 668
Bme18I	GGWCC	2 cut(s)	280, 330
BmgT120I	GGNCC	3 cut(s)	280, 295, 330
BmiI	GGNNCC	2 cut(s)	297, 304
BmrFI	CCNGG	3 cut(s)	30, 300, 668
BmsI	GCATC	2 cut(s)	484, 679
BpiI	GAAGAC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	298, 727
Bse1I	ACTGG	2 cut(s)	379, 637
BseBI	CCWGG	2 cut(s)	300, 668
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	298, 727
BseGI	GGATG	3 cut(s)	43, 117, 499
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	379, 637
BseXI	GCAGC	3 cut(s)	21, 48, 512
BseYI	CCCAGC	1 cut(s)	378
Bsh1236I	CGCG	2 cut(s)	205, 285
Bsh1285I	CGRYCG	1 cut(s)	511
BshFI	GGCC	2 cut(s)	296, 536
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	2 cut(s)	185, 452
BsmFI	GGGAC	2 cut(s)	185, 452
BsnI	GGCC	2 cut(s)	296, 536
Bsp143I	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
BspACI	CCGC	3 cut(s)	26, 203, 283
BspANI	GGCC	2 cut(s)	296, 536
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	205, 285
BspHI	TCATGA	3 cut(s)	388, 484, 718
BspLI	GGNNCC	2 cut(s)	297, 304
BspMAI	CTGCAG	2 cut(s)	11, 530
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	737
BspQI	GCTCTTC	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	379, 637
BssECI	CCNNGG	2 cut(s)	298, 727
BssMI	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
BssT1I	CCWWGG	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	300, 668
Bst4CI	ACNGT	2 cut(s)	22, 176
Bst6I	CTCTTC	2 cut(s)	651, 699
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	4 cut(s)	65, 102, 426, 792
BstF5I	GGATG	3 cut(s)	43, 117, 499
BstFNI	CGCG	2 cut(s)	205, 285
BstKTI	GATC	6 cut(s)	108, 270, 484, 511, 745, 769
BstMBI	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
BstMCI	CGRYCG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 525
BstNI	CCWGG	2 cut(s)	300, 668
BstSCI	CCNGG	3 cut(s)	28, 298, 666
BstSFI	CTRYAG	3 cut(s)	7, 246, 526
BstUI	CGCG	2 cut(s)	205, 285
BstV1I	GCAGC	3 cut(s)	21, 48, 512
BstV2I	GAAGAC	1 cut(s)	377
BstXI	CCANNNNNNTGG	2 cut(s)	168, 374
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	296, 536
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	43, 117, 499
BtsIMutI	CAGTG	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	734
CciI	TCATGA	3 cut(s)	388, 484, 718
Cfr13I	GGNCC	3 cut(s)	280, 295, 330
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	2 cut(s)	190, 217
CviAII	CATG	3 cut(s)	389, 485, 719
CviQI	GTAC	2 cut(s)	190, 217
DdeI	CTNAG	4 cut(s)	65, 102, 426, 792
DpnI	GATC	6 cut(s)	107, 269, 483, 510, 744, 768
DpnII	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
DraI	TTTAAA	1 cut(s)	675
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
Eam1104I	CTCTTC	2 cut(s)	651, 699
EarI	CTCTTC	2 cut(s)	651, 699
EciI	GGCGGA	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	727
Eco47I	GGWCC	2 cut(s)	280, 330
Eco57I	CTGAAG	2 cut(s)	579, 680
EcoO109I	RGGNCCY	2 cut(s)	295, 330
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	298, 666
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	3 cut(s)	392, 488, 722
FaiI	YATR	6 cut(s)	390, 465, 486, 533, 720, 755
FalI	AAGNNNNNCTT	6 cut(s)	176, 208, 317, 349, 678, 710
FaqI	GGGAC	2 cut(s)	185, 452
FatI	CATG	3 cut(s)	388, 484, 718
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	7, 10, 62, 526
FokI	GGATG	3 cut(s)	30, 104, 506
Fsp4HI	GCNGC	4 cut(s)	7, 10, 62, 526
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	7, 10, 62, 526
GsaI	CCCAGC	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	296, 536
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	392, 488, 722
HinfI	GANTC	5 cut(s)	39, 85, 98, 164, 700
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	103, 472, 481, 699
Hpy188III	TCNNGA	4 cut(s)	262, 389, 485, 719
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	248, 349, 773
HpyCH4III	ACNGT	2 cut(s)	22, 176
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	9, 93, 138, 528, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 525
HpyF3I	CTNAG	4 cut(s)	65, 102, 426, 792
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	392, 488, 722
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
LguI	GCTCTTC	1 cut(s)	699
LmnI	GCTCC	2 cut(s)	239, 308
Lsp1109I	GCAGC	3 cut(s)	21, 48, 512
LweI	GCATC	2 cut(s)	484, 679
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	68, 156
MalI	GATC	6 cut(s)	107, 269, 483, 510, 744, 768
MboI	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
MboII	GAAGA	9 cut(s)	91, 94, 187, 277, 382, 496, 572, 668, 686
MluCI	AATT	4 cut(s)	565, 576, 600, 722
MlyI	GAGTC	2 cut(s)	92, 173
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	8 cut(s)	159, 321, 400, 432, 506, 547, 652, 726
MseI	TTAA	3 cut(s)	575, 588, 674
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	3 cut(s)	30, 300, 668
MvaI	CCWGG	2 cut(s)	300, 668
MvnI	CGCG	2 cut(s)	205, 285
MwoI	GCNNNNNNNGC	2 cut(s)	282, 525
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
NlaIII	CATG	3 cut(s)	392, 488, 722
NlaIV	GGNNCC	2 cut(s)	297, 304
NmuCI	GTSAC	1 cut(s)	68
PagI	TCATGA	3 cut(s)	388, 484, 718
PciSI	GCTCTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	39, 85, 700
PkrI	GCNGC	4 cut(s)	8, 11, 63, 527
Ple19I	CGATCG	1 cut(s)	511
PleI	GAGTC	2 cut(s)	92, 172
PpsI	GAGTC	2 cut(s)	92, 172
PpuMI	RGGWCCY	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	298, 666
PspFI	CCCAGC	1 cut(s)	378
PspGI	CCWGG	2 cut(s)	298, 666
PspN4I	GGNNCC	2 cut(s)	297, 304
PspPI	GGNCC	3 cut(s)	280, 295, 330
PspPPI	RGGWCCY	1 cut(s)	330
PstI	CTGCAG	2 cut(s)	11, 530
PvuI	CGATCG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	191, 218
RsaNI	GTAC	2 cut(s)	190, 217
SapI	GCTCTTC	1 cut(s)	699
SaqAI	TTAA	3 cut(s)	575, 588, 674
SatI	GCNGC	4 cut(s)	7, 10, 62, 526
Sau3AI	GATC	6 cut(s)	105, 267, 481, 508, 742, 766
Sau96I	GGNCC	3 cut(s)	280, 295, 330
SchI	GAGTC	2 cut(s)	92, 173
ScrFI	CCNGG	3 cut(s)	30, 300, 668
SfaNI	GCATC	2 cut(s)	484, 679
SfcI	CTRYAG	3 cut(s)	7, 246, 526
SinI	GGWCC	2 cut(s)	280, 330
Sse9I	AATT	4 cut(s)	565, 576, 600, 722
SsiI	CCGC	3 cut(s)	26, 203, 283
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	28, 298, 666
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	22, 176
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	4 cut(s)	129, 507, 511, 788
TasI	AATT	4 cut(s)	565, 576, 600, 722
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	39, 85, 700
Tru1I	TTAA	3 cut(s)	575, 588, 674
Tru9I	TTAA	3 cut(s)	575, 588, 674
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	4 cut(s)	6, 9, 61, 525
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	377, 636, 735
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	280, 330
VspI	ATTAAT	1 cut(s)	575
XapI	RAATTY	1 cut(s)	722
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.