Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004288.1

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

11066 .. 15990

Gene Structure 4925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004288.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

atgaggtggtttagagcagggtctggtgtggcaaagcttgccattaggagatcagtatcgaccagtggatcatacactgtgacaaggcgggttattccgtcgcagaatcggtacttgcacacaacaatatgcaagtcgaaggcagaagctgcgccggttcctcgtccggtgcccctttctaggctcactgatagtttcttggatggaaccagcagtgtgtatttggaagggcttcagagggcctgggaagctgaccccgatagcgttgatgagtcgtgggataatttctttaggaattttgtgggtcaggcctctacgtcgcctgggatttcggggcaaaccatccaagagagtatgcgtttgttgttgctcgtgagggcttaccaggttaatggtcacatgaaagctaaacttgatcctttgggcttggaggagagagaaatcccagatgatttggaccctgcgctgtatgggttcactgaggctgatcttgacagggagttctttttaggggtttggaagatggctgggtttctttctgagaatcgtccagtgcagacccttaggtccatattgacccggcttgagcaggcctactgtgggagcattgggtatgagtatatgcatattgccgatcgaaacaaatgtaactggttgagagataagattgagaccccgacgacgatgcaatacaacaggcagcgccgtgaggttattcttgacaggcttatttggagtacacagtttgagaacttcttggccactaagtggacaacagcaaagaggtttgggcttgaaggttgtgaaactctcattcctggtatgaaggagatgtttgatagggcagcagatcttggggttgagagcatagttattggaatgcctcacagaggaagattgaatgtattgggtaatgtggtccgaaagcctttgcgtcagatatttagtgaattcagtggcggcacaaagcctgtagatgaagttgggctttacacagggactggtgatgtcaagtatcacttgggaacttcttatgatcgacccactagaggtgggaagagaattcatctatctttggttgcaaatccaagtcacttggaagctgtggatccagttgttgttggaaaaactagagcaaagcagtattattcaaatgatgtggacagaaccaagaatatgggggttttgatccatggagatggtagctttgctggacaaggtgtggtctacgagactctgcatcttagtgctcttcctaattacaccactggcgggaccatacacattgtggtgaacaaccaagttgccttcacgactgacccaatgtctggtagatcttcagagtactgcactgatgttgctaaagccttgaatgcccctatcttccacgtaaatgctgatgatatggaggcagtcgttcatgtctgtgagcttgcagctgagtggcgccagactttccattctgatgttgtagttgatttagtttgttatcgtcgatttgggcataatgagattgatgagccgtcatttacgcagcccaaaatgtacaaggttattaggagtcatccaaatcctctaactatttacaagaacaaacttttagaatctggacaagtgaccaaagatgatattgagaggatacagagcaaggttaatacgattctaaacgaagagttcttagctagcaaagattatgttcctcaaagaagggactggctttcatctcattggtctgggttcaagtcacctgaacagctttctcgtatccgtaatactggtgtaaaaccagatattttgaagaatgttggcaaagcgatcacagccctacctgaaaattttaagcctcacagagcagtaaagaaggtatatggagaacgtgcacaaatgattgagactggtgaaggcatcgactgggctgttggagaagcacttgcctttgctacactgctagtagagggtaaccatgtaagattgagtggacaggatgttgaaagaggtacatttagtcatcgacatgctgtacttcacgaccaggaaacaggggaaaggtattgccctctggatcatgttatagcgaaccaagatgaggagatgtttacagttagcaacagctcactttcggagttcggtgttcttggatttgaattgggttactcaatggagaatccaaatgcattggtgatttgggaagctcaatttggtgattttgccaatggggctcaagttatatttgatcagtttttgagcagcggggagtcaaagtggcttcgccaaactgggcttgttttactgcttccacatggttatgatggtcagggacctgaacattctagtgcaagattggagcgatttcttcagatgagtgatgacaatccttatgtcatacctgagatggatcctacactccggaagcaaattcaggaatgcaattggcagattgtgaatgtgaccactcctgctaattatttccatgtcctgcgtcgtcagataaacagggacttccgcaaacctcttgttgtcatggctcctaaaaacttgcttcggcacaaggactgcaaatcaaatttatctgagtttgatgatgttcaaggccacccagggtttgacaagcagggaaccagatttaagcgcctcattaaagatcaaaatgaccactctgatctggaggagggtatcagacggcttgttctttgctctgggaagatttattatgagcttgatgaagtgcgaagaaagaccagtgcaaaggatgttgcaatatgtagagtggaacagctttgccccttcccatatgacctcatccagcgagagctgaagcgatatcctaatgctgagatagtttggtgccaggaagagccaatgaacatgggtggctatagctacattcaacctcgcctatgcactgccatgaagtcgctgagcagaggaactattgacgacatcaaatatattggccgcgctccatctgctgccacagccactggtttctatcaagttcacctcaaggaacaagcagacattgttcacaaagcactgcagcctgagccaatcgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

1018

Amino Acids

115.3

Weight (kDa)

6.53

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB1I	GGYRCC	3 cut(s)	169, 1446, 2844
AccB7I	CCANNNNNTGG	2 cut(s)	768, 1328
AccI	GTMKAC	1 cut(s)	1227
AccII	CGCG	1 cut(s)	2958
AccIII	TCCGGA	1 cut(s)	2406
AciI	CCGC	6 cut(s)	88, 960, 1272, 2250, 2503, 2956
AclWI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2070, 2390, 2403
AcoI	YGGCCR	2 cut(s)	759, 2953
AcsI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
AcuI	CTGAAG	4 cut(s)	218, 1323, 2339, 2834
AcyI	GRCGYC	1 cut(s)	1447
AdeI	CACNNNGTG	2 cut(s)	768, 1288
AfaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1999, 2022
AfiI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
AhdI	GACNNNNNGTC	1 cut(s)	1324
AjnI	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
AjuI	GAANNNNNNNTTGG	2 cut(s)	2181, 2213
Alw21I	GWGCWC	2 cut(s)	1252, 1882
Alw26I	GTCTC	3 cut(s)	665, 1226, 1886
Alw44I	GTGCAC	1 cut(s)	1878
AlwI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2070, 2390, 2403
AlwNI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2981
Aor13HI	TCCGGA	1 cut(s)	2406
AoxI	GGCC	6 cut(s)	240, 309, 591, 759, 2590, 2953
ApaLI	GTGCAC	1 cut(s)	1878
ApeKI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2247, 2969, 3037
ApoI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
AspS9I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
AsuC2I	CCSGG	1 cut(s)	580
AsuHPI	GGTGA	7 cut(s)	1016, 1303, 1737, 1910, 2191, 2213, 2990
AsuNHI	GCTAGC	1 cut(s)	1682
AvaII	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
AxyI	CCTNAGG	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	174, 1882
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	2 cut(s)	1108, 2395
BanI	GGYRCC	3 cut(s)	169, 1446, 2844
BanII	GRGCYC	1 cut(s)	2221
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	1252, 1882
BbvI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BccI	CCATC	7 cut(s)	197, 350, 517, 1193, 2303, 2386, 2971
BceAI	ACGGC	3 cut(s)	690, 1507, 2696
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BciT130I	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BciVI	GTATCC	2 cut(s)	1632, 1775
BclI	TGATCA	1 cut(s)	2233
BcnI	CCSGG	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	665, 1226, 1886
BfaI	CTAG	6 cut(s)	180, 1047, 1131, 1683, 1949, 2331
BfmI	CTRYAG	3 cut(s)	972, 2875, 3035
BfoI	RGCGCY	3 cut(s)	706, 1450, 2632
BfuI	GTATCC	2 cut(s)	1632, 1775
BglI	GCCNNNNNGGC	1 cut(s)	2216
BglII	AGATCT	2 cut(s)	850, 1334
BlpI	GCTNAGC	1 cut(s)	2918
BmcAI	AGTACT	1 cut(s)	1346
Bme1390I	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2033, 2598, 2849
Bme18I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
BmeRI	GACNNNNNGTC	1 cut(s)	1324
BmgT120I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
BmrFI	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2033, 2598, 2849
BmrI	ACTGGG	2 cut(s)	1921, 2286
BmsI	GCATC	3 cut(s)	675, 1249, 1914
BmtI	GCTAGC	1 cut(s)	1686
BmuI	ACTGGG	2 cut(s)	1921, 2286
BpmI	CTGGAG	1 cut(s)	2684
Bpu10I	CCTNAGC	1 cut(s)	3042
Bpu1102I	GCTNAGC	1 cut(s)	2918
BpuEI	CTTGAG	3 cut(s)	605, 2205, 2987
BpuMI	CCSGG	1 cut(s)	580
Bsa29I	ATCGAT	1 cut(s)	3051
BsaAI	YACGTR	1 cut(s)	1390
BsaBI	GATNNNNATC	2 cut(s)	55, 2370
BsaHI	GRCGYC	1 cut(s)	1447
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	243, 323, 1192, 2596, 2597
BsaWI	WCCGGW	2 cut(s)	166, 2406
BsaXI	ACNNNNNCTCC	2 cut(s)	2246, 2276
Bsc4I	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
Bse118I	RCCGGY	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	563
Bse8I	GATNNNNATC	2 cut(s)	55, 2370
BseAI	TCCGGA	1 cut(s)	2406
BseBI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BseCI	ATCGAT	1 cut(s)	3051
BseDI	CCNNGG	5 cut(s)	243, 323, 1192, 2596, 2597
BseGI	GGATG	6 cut(s)	208, 342, 1564, 1990, 2755, 2799
BseJI	GATNNNNATC	2 cut(s)	55, 2370
BseLI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
BseMII	CTCAG	8 cut(s)	471, 531, 1431, 2379, 2562, 2823, 2909, 3033
BseRI	GAGGAG	3 cut(s)	446, 2102, 2681
BseSI	GKGCMC	2 cut(s)	174, 1882
BseXI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	575, 1333
Bsh1236I	CGCG	1 cut(s)	2958
Bsh1285I	CGRYCG	1 cut(s)	637
BshFI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BshNI	GGYRCC	3 cut(s)	169, 1446, 2844
BshVI	ATCGAT	1 cut(s)	3051
BsiEI	CGRYCG	1 cut(s)	637
BsiHKAI	GWGCWC	2 cut(s)	1252, 1882
BsiSI	CCGG	4 cut(s)	155, 167, 580, 2407
BslFI	GGGAC	5 cut(s)	1012, 1288, 1724, 2331, 2510
BslI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
BsmAI	GTCTC	3 cut(s)	665, 1226, 1886
BsmFI	GGGAC	5 cut(s)	1012, 1288, 1724, 2331, 2510
BsmI	GAATGC	3 cut(s)	885, 1378, 2429
BsnI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
Bso31I	GGTCTC	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
Bsp13I	TCCGGA	1 cut(s)	2406
Bsp1407I	TGTACA	1 cut(s)	1545
Bsp1720I	GCTNAGC	1 cut(s)	2918
Bsp19I	CCATGG	1 cut(s)	1192
BspACI	CCGC	6 cut(s)	88, 960, 1272, 2250, 2503, 2956
BspANI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BspCNI	CTCAG	8 cut(s)	472, 532, 1432, 2380, 2563, 2824, 2910, 3034
BspDI	ATCGAT	1 cut(s)	3051
BspEI	TCCGGA	1 cut(s)	2406
BspFNI	CGCG	1 cut(s)	2958
BspMAI	CTGCAG	1 cut(s)	3039
BspOI	GCTAGC	1 cut(s)	1686
BspPI	GGATC	8 cut(s)	76, 410, 1103, 1116, 1183, 2070, 2390, 2403
BspQI	GCTCTTC	2 cut(s)	1257, 2847
BspT107I	GGYRCC	3 cut(s)	169, 1446, 2844
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	1545
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	5 cut(s)	243, 323, 1192, 2596, 2597
BssNI	GRCGYC	1 cut(s)	1447
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
Bst4CI	ACNGT	4 cut(s)	79, 599, 744, 2101
Bst6I	CTCTTC	4 cut(s)	1052, 1257, 1665, 2847
BstACI	GRCGYC	1 cut(s)	1447
BstAPI	GCANNNNNTGC	2 cut(s)	38, 149
BstAUI	TGTACA	1 cut(s)	1545
BstBAI	YACGTR	1 cut(s)	1390
BstC8I	GCNNGC	4 cut(s)	39, 591, 1434, 1684
BstDSI	CCRYGG	1 cut(s)	1192
BstEII	GGTNACC	1 cut(s)	1958
BstENI	CCTNNNNNAGG	1 cut(s)	888
BstF5I	GGATG	6 cut(s)	208, 342, 1564, 1990, 2755, 2799
BstFNI	CGCG	1 cut(s)	2958
BstH2I	RGCGCY	3 cut(s)	706, 1450, 2632
BstHHI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
BstMAI	GTCTC	3 cut(s)	665, 1226, 1886
BstMCI	CGRYCG	1 cut(s)	637
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
BstNI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BstNSI	RCATGY	1 cut(s)	2018
BstPI	GGTNACC	1 cut(s)	1958
BstSCI	CCNGG	8 cut(s)	242, 322, 384, 578, 817, 2031, 2596, 2847
BstSFI	CTRYAG	3 cut(s)	972, 2875, 3035
BstSLI	GKGCMC	2 cut(s)	174, 1882
BstUI	CGCG	1 cut(s)	2958
BstV1I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BstX2I	RGATCY	4 cut(s)	850, 1108, 1334, 2395
BstXI	CCANNNNNNTGG	3 cut(s)	392, 1177, 1199
BstYI	RGATCY	4 cut(s)	850, 1108, 1334, 2395
Bsu15I	ATCGAT	1 cut(s)	3051
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	2 cut(s)	1632, 1775
BsuRI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BsuTUI	ATCGAT	1 cut(s)	3051
BtgI	CCRYGG	1 cut(s)	1192
BtsCI	GGATG	6 cut(s)	208, 342, 1564, 1990, 2755, 2799
BtsI	GCAGTG	4 cut(s)	220, 1943, 2901, 3032
Cac8I	GCNNGC	4 cut(s)	39, 591, 1434, 1684
CaiI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2981
CfoI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
ClaI	ATCGAT	1 cut(s)	3051
CseI	GACGC	2 cut(s)	923, 2468
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
CspCI	CAANNNNNGTGG	2 cut(s)	1140, 1175
CviQI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
DinI	GGCGCC	1 cut(s)	1448
DraIII	CACNNNGTG	2 cut(s)	768, 1288
DrdI	GACNNNNNNGTC	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	1324
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	2 cut(s)	759, 2953
Eam1104I	CTCTTC	4 cut(s)	1052, 1257, 1665, 2847
Eam1105I	GACNNNNNGTC	1 cut(s)	1324
EarI	CTCTTC	4 cut(s)	1052, 1257, 1665, 2847
Eco130I	CCWWGG	1 cut(s)	1192
Eco147I	AGGCCT	2 cut(s)	311, 593
Eco24I	GRGCYC	1 cut(s)	2221
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	2822
Eco47I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
Eco57I	CTGAAG	4 cut(s)	218, 1323, 2339, 2834
Eco81I	CCTNAGG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	1958
EcoNI	CCTNNNNNAGG	1 cut(s)	888
EcoO109I	RGGNCCY	2 cut(s)	240, 2318
EcoO65I	GGTNACC	1 cut(s)	1958
EcoRI	GAATTC	2 cut(s)	950, 1062
EcoRII	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
EcoRV	GATATC	1 cut(s)	2822
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	2 cut(s)	627, 2176
EcoT38I	GRGCYC	1 cut(s)	2221
EgeI	GGCGCC	1 cut(s)	1448
EheI	GGCGCC	1 cut(s)	1448
ErhI	CCWWGG	1 cut(s)	1192
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 972, 1004, 1004, 1036
FaqI	GGGAC	5 cut(s)	1012, 1288, 1724, 2331, 2510
FauI	CCCGC	3 cut(s)	81, 1265, 2243
FauNDI	CATATG	1 cut(s)	2791
FbaI	TGATCA	1 cut(s)	2233
FblI	GTMKAC	1 cut(s)	1227
FokI	GGATG	6 cut(s)	215, 329, 1551, 1997, 2762, 2786
FriOI	GRGCYC	1 cut(s)	2221
FspBI	CTAG	6 cut(s)	180, 1047, 1131, 1683, 1949, 2331
GlaI	GCGC	6 cut(s)	153, 465, 704, 1448, 2630, 2959
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	2684
HaeII	RGCGCY	3 cut(s)	706, 1450, 2632
HaeIII	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
HapII	CCGG	4 cut(s)	155, 167, 580, 2407
HgaI	GACGC	2 cut(s)	923, 2468
HhaI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
Hin1I	GRCGYC	1 cut(s)	1447
Hin6I	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
HinP1I	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	9 cut(s)	106, 272, 544, 1234, 1561, 1604, 1660, 2164, 2255
HpaII	CCGG	4 cut(s)	155, 167, 580, 2407
HphI	GGTGA	7 cut(s)	1016, 1303, 1737, 1910, 2191, 2213, 2990
Hpy99I	CGWCG	6 cut(s)	103, 322, 682, 685, 1497, 2484
HpyAV	CCTTC	9 cut(s)	133, 221, 791, 820, 1318, 1701, 1855, 1895, 2794
HpyCH4III	ACNGT	4 cut(s)	79, 599, 744, 2101
HpyCH4IV	ACGT	3 cut(s)	317, 1389, 1876
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
HpySE526I	ACGT	3 cut(s)	317, 1389, 1876
Hsp92I	GRCGYC	1 cut(s)	1447
HspAI	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
KasI	GGCGCC	1 cut(s)	1446
Kpn2I	TCCGGA	1 cut(s)	2406
Ksp22I	TGATCA	1 cut(s)	2233
LguI	GCTCTTC	2 cut(s)	1257, 2847
LmnI	GCTCC	4 cut(s)	603, 2344, 2530, 2965
Lsp1109I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
LweI	GCATC	3 cut(s)	675, 1249, 1914
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	6 cut(s)	180, 1047, 1131, 1683, 1949, 2331
MaeII	ACGT	3 cut(s)	317, 1389, 1876
MaeIII	GTNAC	9 cut(s)	79, 395, 647, 1091, 1615, 1743, 1958, 2150, 2446
MfeI	CAATTG	1 cut(s)	2428
MflI	RGATCY	4 cut(s)	850, 1108, 1334, 2395
MhlI	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
MlsI	TGGCCA	1 cut(s)	761
MluNI	TGGCCA	1 cut(s)	761
Mly113I	GGCGCC	1 cut(s)	1447
MlyI	GAGTC	4 cut(s)	281, 1228, 1570, 2264
MmeI	TCCRAC	2 cut(s)	1102, 1900
Mox20I	TGGCCA	1 cut(s)	761
Mph1103I	ATGCAT	2 cut(s)	627, 2176
MroI	TCCGGA	1 cut(s)	2406
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	1439, 2250
MspI	CCGG	4 cut(s)	155, 167, 580, 2407
MspR9I	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2033, 2598, 2849
MunI	CAATTG	1 cut(s)	2428
Mva1269I	GAATGC	3 cut(s)	885, 1378, 2429
MvaI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
MvnI	CGCG	1 cut(s)	2958
MwoI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
NarI	GGCGCC	1 cut(s)	1447
NciI	CCSGG	1 cut(s)	580
NcoI	CCATGG	1 cut(s)	1192
NdeI	CATATG	1 cut(s)	2791
NheI	GCTAGC	1 cut(s)	1682
NmuCI	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1743, 2446
NsiI	ATGCAT	2 cut(s)	627, 2176
NspI	RCATGY	1 cut(s)	2018
PasI	CCCWGGG	1 cut(s)	2597
PceI	AGGCCT	2 cut(s)	311, 593
PciSI	GCTCTTC	2 cut(s)	1257, 2847
PctI	GAATGC	3 cut(s)	885, 1378, 2429
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2164
PflMI	CCANNNNNTGG	2 cut(s)	768, 1328
Ple19I	CGATCG	1 cut(s)	637
PleI	GAGTC	4 cut(s)	280, 1228, 1569, 2263
PluTI	GGCGCC	1 cut(s)	1450
PpsI	GAGTC	4 cut(s)	280, 1228, 1569, 2263
Ppu21I	YACGTR	1 cut(s)	1390
PpuMI	RGGWCCY	1 cut(s)	2318
Psp5II	RGGWCCY	1 cut(s)	2318
Psp6I	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
PspEI	GGTNACC	1 cut(s)	1958
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
PspPI	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
PspPPI	RGGWCCY	1 cut(s)	2318
PstI	CTGCAG	1 cut(s)	3039
PstNI	CAGNNNCTG	4 cut(s)	23, 149, 1001, 2981
PsuI	RGATCY	4 cut(s)	850, 1108, 1334, 2395
PvuI	CGATCG	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1999, 2022
RsaNI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
SapI	GCTCTTC	2 cut(s)	1257, 2847
SaqAI	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Sau96I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
ScaI	AGTACT	1 cut(s)	1346
SchI	GAGTC	4 cut(s)	281, 1228, 1570, 2264
ScrFI	CCNGG	8 cut(s)	244, 324, 386, 580, 819, 2033, 2598, 2849
SduI	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	675, 1249, 1914
SfcI	CTRYAG	3 cut(s)	972, 2875, 3035
SfoI	GGCGCC	1 cut(s)	1448
SinI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
SmlI	CTYRAG	3 cut(s)	584, 2220, 3002
SmoI	CTYRAG	3 cut(s)	584, 2220, 3002
SseBI	AGGCCT	2 cut(s)	311, 593
SsiI	CCGC	6 cut(s)	88, 960, 1272, 2250, 2503, 2956
SspDI	GGCGCC	1 cut(s)	1446
SspMI	CTAG	6 cut(s)	180, 1047, 1131, 1683, 1949, 2331
StuI	AGGCCT	2 cut(s)	311, 593
StyD4I	CCNGG	8 cut(s)	242, 322, 384, 578, 817, 2031, 2596, 2847
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	4 cut(s)	79, 599, 744, 2101
TaiI	ACGT	3 cut(s)	320, 1392, 1879
TaqI	TCGA	8 cut(s)	59, 137, 637, 1039, 1495, 1908, 2011, 3051
TatI	WGTACW	4 cut(s)	737, 1344, 1545, 2020
TauI	GCSGC	2 cut(s)	963, 2958
TfiI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2164
Tru1I	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Tru9I	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
TseFI	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1743, 2446
TseI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2247, 2969, 3037
Tsp45I	GTSAC	6 cut(s)	79, 395, 1091, 1615, 1743, 2446
TspDTI	ATGAA	9 cut(s)	416, 839, 993, 1055, 1409, 1710, 2736, 2876, 2924
TspGWI	ACGGA	2 cut(s)	87, 1757
Van91I	CCANNNNNTGG	2 cut(s)	768, 1328
VneI	GTGCAC	1 cut(s)	1878
VpaK11BI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
XagI	CCTNNNNNAGG	1 cut(s)	888
XapI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
XceI	RCATGY	1 cut(s)	2018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XmiI	GTMKAC	1 cut(s)	1227
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	6 cut(s)	180, 1047, 1131, 1683, 1949, 2331
ZrmI	AGTACT	1 cut(s)	1346
Zsp2I	ATGCAT	2 cut(s)	627, 2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.