Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Forward (+)

57366075 .. 57372005

Gene Structure 5931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G029690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

ATGAGGTGGTTTAGAGCCGGGTCTAGTGTGGCAAAGTTTGCCATTAGGAGATCACTATCGAATAGGCATGTAGTTCCTTTGCAAAATCGATACTTGCAAACCACAATGTGCAAGTATTCCAAGGCAGGGGCTGCCCCGGTTCCTCGGCCGGTGCCGCTTTCGAAGCTGACTGATAGTTTCTTGGATGGAAGCAATAGTGTTTATTTAGAGGGGCTTCAGAGGGCCTGGGAGGCTGATCCCAGCAGTGTTGATGAATCCTGGGATAATTTCTTCAGGAATTTTGTGGGGCAGGCCTCTACCTCCCCTGGAGTTTCGGGGCAGACCATTCAAGAGAGTATGCGTTTGTTGTTGCTTGTGAGGGCTTATCAGGTTACAGGTCATATGAAAGCTAAATTGGATCCTTTGGCACTGCAGGAGAGGAAAGTCCCAGATGAGTTGGACCCTGCTTCATATGGGTTTACTGAGGCTGATCTTGATAGGGAGTTCTTTTTAGGGGTTTGGAGGATAGCTGGGTTTCTGGCTGAGAATCGTCCGGTGCAGACCCTTAGGTCCATATTGACCCGGCTAGAGCAGGCTTACTGTGGGAGCATTGGGTATGAGTATATGCACATTGCGGATCGTAACAAATGTAACTGGTTGAGAGAAAAGATTGAGACTCCAACAATGATGCAATACAATGGGCAGCGCCGTGAGGTTTTTCTTGACAGGCTTATTTGGAGTACACAGTTTGAGAACTTCTTGCACTCTAAGTGGAAAACAGCAAAGAGGTTTGGGCTTGAAGGTTGCGAAACTCTCATTCCTGGCATGAAGGAGATGTTTGATAGGGCAGCAGATCTTGGGGTTGAGAGCATAGTCATTGGAATGCCTCATAGAGGAAGACTGAATGTATTGGGTAATGTGGTCCGAAAACCTTTGCGGCAGATATTCAGTGAATTCAGTGGTGGTACAAAGCCTGTGGATGAAGATGGGCTGTACTCAGGGACTGGTGATGTCAAGTATCACTTGGGAACTTCCTATGATCGACCCACTAGAGGTGGGAAAAGACTTCATCTATCTTTGGTTGCAAATCCAAGTCACTTGGAAGCTGTGGATCCAGTTGTTGTTGGAAAAACAAGAGCAAAGCAATTTTATTCAAATGATTTGGACAGGACCAAGAATATGGCAGTTTTGATTCATGGAGATGGTAGCTTTGCCGGACAAGGAGTGGTCTACGAGACTCTGCATCTTAGTGCTCTTCCTAATTACACCACTGGTGGGACTATACACATTGTAGTGAATAACCAAGTTGCCTTCACAACTGATCCAATGTCCGGCAGATCTTCAGAGTATTGCACTGATGTTGCTAAAGCCTTGAATGTCCCTATTTTCCATGTAAATGCTGATGACATGGAGGCAGTTGTTCATGTCTGTGAGCTTGCAGCTGAGTGGCGCCAGACATTCCATTCTGATGTTGTAGTTGATTTAGTGTGTTATCGTCGATTTGGGCATAATGAGTTAGATGAGCCATCATTTACGCAGCCTAAAATGTACCAGGTTATTAAAAATCATCCGAACCCTCTAACTATTTACACAAACAAACTTTTAGAATCTGGACAAGTGAACCAAGAAGATATTGAGAGGATACAGAGCAAGGTTAATAAGATTCTAAACGAAGAGTTCTTAGCTAGCAAAGATTATGTTCCTCAAAGAAGGGATTGGCTTGCATCTCATTGGACTGGATTCAAGTCACCTGAACAACTTTCTCGTATCCGGAACACTGGGGTAAAACCAGAGATTTTGAAGAATGTTGGCAAAGCAATCACATTTTTACCAGAAAATTTTAAACCTCATAGAGCAGTAAAGAAGGTATATGGAGAACGTGCAGAAATGATTGAGACTGGTGAAGGTATTGATTGGGCAGTTGCAGAAGCACTTGCCTTTGCTACACTGCTTGTAGAAGGTAACCATGTTCGACTGAGTGGTCAGGATGTTGAGAGAGGTACGTTTAGTCATCGGCATTCTGTACTTCATGACCAGGAAACAGGGGACAAGTATTGCCCTCTGGACCATGTTATGGCGAACCAAGATGAGGAATTGTTTACAGTTAGCAACAGCTCACTTTCGGAGTTTGGTGTTCTTGGGTTTGAATTGGGTTACTCGATGGAGAATCCAAATGCGTTGGTACTTTGGGAAGCTCAATTTGGTGATTTTGCCAATGGAGCTCAAGTTATATTTGATCAGTTTTTGAGCAGTGGGGAGTCAAAGTGGCTTCGTCAAACTGGGCTTGTTGTACTGCTTCCACACAGTTATGCTGGTCAGGGACCTGAACATTCAAGTGCCCGATTGGAGCGATTTCTTCAGATGAGTGATGACAATCCTTACCTCATACCTGAGATGGATCATACACATCGGAAGCAAATTCAGGAATGTAATTGGCAGGTTGTGAATGTGACAACTCCTGCTAATTATTTCCATGTCCTGCGTCGTCAGATAAACAGGGAGTTCCGCAAGCCTCTTGTTGTGATGGCTCCTAAAAACTTGCTCCGACACAAAGACTGCAAATCAAATTTATCCGAGTTTGATGATGTTGAAGGCCACCCAGGTTTTGACAAGCAGGGGACCAGATTTAAGCGCCTTATAAAGGACCAGAATGATCACTCTGATCTGGAGGAGGGTATTAGACGGCTTGTTCTTTGCTCCGGAAAGATTTACTATGAGCTTGATGAAGAGCGAAGACAGACTAATGTGAAGGATGTTGCAATATGTAGAGTGGAACAGCTTTGCCCCTTGCCATATAACCTCATTCAGCGAGAGCTGAAGCGATATCCTAATGCTGAGATAGTTTGGTGCCAGGAAGAGCCGATGAACATGGGTGCGTACAGCTACATCTCACCTCGACTATGCACTGCCATGAAGTCAGTGAGCAGAGGAACTGCTGATGATATCAAATATGTTGGTCGTCCTCCATCAGCTTCCACAGCAACTGGTTTCTATGACGTTCATCTCAAGGAACAGTCTGAGCTTGTGCACAAAGCGCTGCAGCCTGAGCCAATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

1012

Amino Acids

114.96

Weight (kDa)

6.45

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	58 - 95	1.4e-14	2-oxoglutarate dehydrogenase N-terminus
E1_dh	PF00676	239 - 559	7.2e-62	Dehydrogenase E1 component
Transket_pyr	PF02779	629 - 842	2e-48	Transketolase, pyrimidine binding domain
OxoGdeHyase_C	PF16870	865 - 1006	1.3e-50	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2618
AasI	GACNNNNNNGTC	2 cut(s)	547, 1959
Acc36I	ACCTGC	1 cut(s)	2407
AccB1I	GGYRCC	3 cut(s)	151, 1428, 2826
AccB7I	CCANNNNNTGG	1 cut(s)	2053
AccI	GTMKAC	1 cut(s)	1209
AccIII	TCCGGA	2 cut(s)	1749, 2678
AciI	CCGC	4 cut(s)	155, 614, 916, 2485
AclWI	GGATC	8 cut(s)	230, 392, 405, 624, 1085, 1098, 1295, 2385
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	5 cut(s)	277, 932, 1816, 2397, 2545
AcuI	CTGAAG	5 cut(s)	200, 256, 1305, 2321, 2816
AcyI	GRCGYC	1 cut(s)	1429
AdeI	CACNNNGTG	1 cut(s)	108
AfaI	GTAC	9 cut(s)	721, 946, 974, 1529, 1981, 2004, 2163, 2271, 2858
AfeI	AGCGCT	1 cut(s)	3015
AfiI	CCNNNNNNNGG	8 cut(s)	126, 872, 1031, 1254, 1310, 2053, 2068, 2620
AgsI	TTSAA	9 cut(s)	329, 779, 1134, 1354, 1723, 1780, 2126, 2313, 2570
AjnI	CCWGG	8 cut(s)	224, 257, 304, 799, 1530, 2013, 2578, 2829
AjuI	GAANNNNNNNTTGG	4 cut(s)	377, 409, 2163, 2195
Alw21I	GWGCWC	3 cut(s)	1234, 2203, 3009
Alw26I	GTCTC	3 cut(s)	647, 1208, 1868
Alw44I	GTGCAC	1 cut(s)	3005
AlwI	GGATC	8 cut(s)	230, 392, 405, 624, 1085, 1098, 1295, 2385
AlwNI	CAGNNNCTG	3 cut(s)	131, 983, 2963
Aor13HI	TCCGGA	2 cut(s)	1749, 2678
Aor51HI	AGCGCT	1 cut(s)	3015
AoxI	GGCC	4 cut(s)	146, 222, 291, 2572
ApaLI	GTGCAC	1 cut(s)	3005
ApeKI	GCWGC	7 cut(s)	131, 682, 827, 1418, 1516, 3016, 3019
ApoI	RAATTY	5 cut(s)	277, 932, 1816, 2397, 2545
AspLEI	GCGC	4 cut(s)	687, 1431, 2613, 3016
AspS9I	GGNCC	9 cut(s)	222, 439, 549, 901, 1149, 2044, 2300, 2598, 2623
AsuC2I	CCSGG	3 cut(s)	19, 137, 562
AsuHPI	GGTGA	5 cut(s)	998, 1719, 1892, 2195, 2862
AsuII	TTCGAA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	1664
AvaII	GGWCC	8 cut(s)	439, 549, 901, 1149, 2044, 2300, 2598, 2623
AxyI	CCTNAGG	1 cut(s)	545
BaeGI	GKGCMC	2 cut(s)	2320, 3009
BamHI	GGATCC	2 cut(s)	397, 1090
BanI	GGYRCC	3 cut(s)	151, 1428, 2826
BanII	GRGCYC	1 cut(s)	2203
BbsI	GAAGAC	2 cut(s)	883, 2719
Bbv12I	GWGCWC	3 cut(s)	1234, 2203, 3009
BbvI	GCAGC	7 cut(s)	118, 694, 839, 1430, 1528, 3003, 3031
BccI	CCATC	8 cut(s)	179, 959, 1175, 1513, 2134, 2368, 2497, 2953
BceAI	ACGGC	2 cut(s)	672, 2678
BciT130I	CCWGG	8 cut(s)	226, 259, 306, 801, 1532, 2015, 2580, 2831
BciVI	GTATCC	2 cut(s)	1614, 1757
BclI	TGATCA	2 cut(s)	2215, 2632
BcnI	CCSGG	3 cut(s)	19, 137, 562
BcoDI	GTCTC	3 cut(s)	647, 1208, 1868
BfaI	CTAG	4 cut(s)	24, 566, 1029, 1665
BfmI	CTRYAG	2 cut(s)	410, 3017
BfoI	RGCGCY	4 cut(s)	688, 1432, 2614, 3017
BfuAI	ACCTGC	1 cut(s)	2407
BfuI	GTATCC	2 cut(s)	1614, 1757
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	2 cut(s)	832, 1316
BisI	GCNGC	9 cut(s)	132, 155, 683, 828, 917, 1419, 1517, 3017, 3020
BlsI	GCNGC	9 cut(s)	133, 156, 684, 829, 918, 1420, 1518, 3018, 3021
Bme18I	GGWCC	8 cut(s)	439, 549, 901, 1149, 2044, 2300, 2598, 2623
BmgT120I	GGNCC	9 cut(s)	222, 439, 549, 901, 1149, 2044, 2300, 2598, 2623
BmrI	ACTGGG	2 cut(s)	1767, 2268
BmsI	GCATC	3 cut(s)	657, 1231, 1712
BmtI	GCTAGC	1 cut(s)	1668
BmuI	ACTGGG	2 cut(s)	1767, 2268
BpiI	GAAGAC	2 cut(s)	883, 2719
BpmI	CTGGAG	2 cut(s)	327, 2666
Bpu10I	CCTNAGC	1 cut(s)	3024
Bpu14I	TTCGAA	1 cut(s)	161
BpuEI	CTTGAG	2 cut(s)	2187, 2969
BpuMI	CCSGG	3 cut(s)	19, 137, 562
Bsa29I	ATCGAT	1 cut(s)	88
BsaBI	GATNNNNATC	2 cut(s)	55, 2352
BsaHI	GRCGYC	1 cut(s)	1429
BsaJI	CCNNGG	7 cut(s)	120, 135, 143, 225, 258, 304, 2578
BsaWI	WCCGGW	3 cut(s)	532, 1749, 2678
BsaXI	ACNNNNNCTCC	4 cut(s)	2190, 2220, 2228, 2258
Bsc4I	CCNNNNNNNGG	8 cut(s)	126, 872, 1031, 1254, 1310, 2053, 2068, 2620
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	9 cut(s)	638, 988, 1094, 1255, 1720, 1762, 1882, 2263, 2968
Bse21I	CCTNAGG	1 cut(s)	545
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	2 cut(s)	55, 2352
BseAI	TCCGGA	2 cut(s)	1749, 2678
BseBI	CCWGG	8 cut(s)	226, 259, 306, 801, 1532, 2015, 2580, 2831
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	7 cut(s)	120, 135, 143, 225, 258, 304, 2578
BseGI	GGATG	5 cut(s)	190, 964, 1546, 1972, 2737
BseJI	GATNNNNATC	2 cut(s)	55, 2352
BseLI	CCNNNNNNNGG	8 cut(s)	126, 872, 1031, 1254, 1310, 2053, 2068, 2620
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	9 cut(s)	453, 513, 990, 1413, 1946, 2361, 2805, 2988, 3015
BseNI	ACTGG	9 cut(s)	638, 988, 1094, 1255, 1720, 1762, 1882, 2263, 2968
BseRI	GAGGAG	1 cut(s)	2663
BseSI	GKGCMC	2 cut(s)	2320, 3009
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	7 cut(s)	118, 694, 839, 1430, 1528, 3003, 3031
BseYI	CCCAGC	2 cut(s)	239, 509
BsgI	GTGCAG	2 cut(s)	557, 1881
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	4 cut(s)	148, 224, 293, 2574
BshNI	GGYRCC	3 cut(s)	151, 1428, 2826
BshVI	ATCGAT	1 cut(s)	88
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	3 cut(s)	1234, 2203, 3009
BsiSI	CCGG	9 cut(s)	18, 137, 149, 533, 562, 1194, 1311, 1750, 2679
BslFI	GGGAC	7 cut(s)	410, 994, 1270, 1343, 2039, 2313, 2611
BslI	CCNNNNNNNGG	8 cut(s)	126, 872, 1031, 1254, 1310, 2053, 2068, 2620
BsmAI	GTCTC	3 cut(s)	647, 1208, 1868
BsmFI	GGGAC	7 cut(s)	410, 994, 1270, 1343, 2039, 2313, 2611
BsmI	GAATGC	2 cut(s)	867, 1996
BsnI	GGCC	4 cut(s)	148, 224, 293, 2574
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	4 cut(s)	1234, 2203, 2320, 3009
Bsp13I	TCCGGA	2 cut(s)	1749, 2678
BspACI	CCGC	4 cut(s)	155, 614, 916, 2485
BspANI	GGCC	4 cut(s)	148, 224, 293, 2574
BspCNI	CTCAG	9 cut(s)	454, 514, 989, 1414, 1947, 2362, 2806, 2989, 3016
BspDI	ATCGAT	1 cut(s)	88
BspEI	TCCGGA	2 cut(s)	1749, 2678
BspHI	TCATGA	1 cut(s)	2008
BspMAI	CTGCAG	2 cut(s)	414, 3021
BspMI	ACCTGC	1 cut(s)	2407
BspOI	GCTAGC	1 cut(s)	1668
BspPI	GGATC	8 cut(s)	230, 392, 405, 624, 1085, 1098, 1295, 2385
BspQI	GCTCTTC	3 cut(s)	1239, 2700, 2829
BspT104I	TTCGAA	1 cut(s)	161
BspT107I	GGYRCC	3 cut(s)	151, 1428, 2826
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	9 cut(s)	638, 988, 1094, 1255, 1720, 1762, 1882, 2263, 2968
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	7 cut(s)	120, 135, 143, 225, 258, 304, 2578
BssNI	GRCGYC	1 cut(s)	1429
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	8 cut(s)	226, 259, 306, 801, 1532, 2015, 2580, 2831
Bst4CI	ACNGT	5 cut(s)	581, 726, 2083, 2285, 2994
Bst6I	CTCTTC	4 cut(s)	1239, 1647, 2700, 2829
BstACI	GRCGYC	1 cut(s)	1429
BstAPI	GCANNNNNTGC	2 cut(s)	38, 131
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	6 cut(s)	291, 573, 1416, 1666, 1701, 2489
BstEII	GGTNACC	1 cut(s)	1940
BstENI	CCTNNNNNAGG	2 cut(s)	870, 2618
BstF5I	GGATG	5 cut(s)	190, 964, 1546, 1972, 2737
BstH2I	RGCGCY	4 cut(s)	688, 1432, 2614, 3017
BstHHI	GCGC	4 cut(s)	687, 1431, 2613, 3016
BstMAI	GTCTC	3 cut(s)	647, 1208, 1868
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 131, 154, 163, 230, 2198, 2957, 3013, 3025
BstNI	CCWGG	8 cut(s)	226, 259, 306, 801, 1532, 2015, 2580, 2831
BstNSI	RCATGY	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	1940
BstSFI	CTRYAG	2 cut(s)	410, 3017
BstSLI	GKGCMC	2 cut(s)	2320, 3009
BstV1I	GCAGC	7 cut(s)	118, 694, 839, 1430, 1528, 3003, 3031
BstV2I	GAAGAC	2 cut(s)	883, 2719
BstX2I	RGATCY	4 cut(s)	397, 832, 1090, 1316
BstXI	CCANNNNNNTGG	1 cut(s)	1159
BstYI	RGATCY	4 cut(s)	397, 832, 1090, 1316
BstZI	CGGCCG	1 cut(s)	146
Bsu15I	ATCGAT	1 cut(s)	88
Bsu36I	CCTNAGG	1 cut(s)	545
BsuI	GTATCC	2 cut(s)	1614, 1757
BsuRI	GGCC	4 cut(s)	148, 224, 293, 2574
BsuTUI	ATCGAT	1 cut(s)	88
BtsCI	GGATG	5 cut(s)	190, 964, 1546, 1972, 2737
BtsI	GCAGTG	5 cut(s)	250, 407, 1925, 2236, 2883
BveI	ACCTGC	1 cut(s)	2407
Cac8I	GCNNGC	6 cut(s)	291, 573, 1416, 1666, 1701, 2489
CaiI	CAGNNNCTG	3 cut(s)	131, 983, 2963
CciI	TCATGA	1 cut(s)	2008
CfoI	GCGC	4 cut(s)	687, 1431, 2613, 3016
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	9 cut(s)	222, 439, 549, 901, 1149, 2044, 2300, 2598, 2623
ClaI	ATCGAT	1 cut(s)	88
CseI	GACGC	1 cut(s)	2450
CsiI	ACCWGGT	1 cut(s)	1530
Csp6I	GTAC	9 cut(s)	720, 945, 973, 1528, 1980, 2003, 2162, 2270, 2857
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviQI	GTAC	9 cut(s)	720, 945, 973, 1528, 1980, 2003, 2162, 2270, 2857
DinI	GGCGCC	1 cut(s)	1430
DraI	TTTAAA	1 cut(s)	1822
DraIII	CACNNNGTG	1 cut(s)	108
DrdI	GACNNNNNNGTC	2 cut(s)	547, 1959
DseDI	GACNNNNNNGTC	2 cut(s)	547, 1959
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	4 cut(s)	1239, 1647, 2700, 2829
EarI	CTCTTC	4 cut(s)	1239, 1647, 2700, 2829
Ecl136II	GAGCTC	1 cut(s)	2201
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	2203
Eco32I	GATATC	2 cut(s)	2804, 2923
Eco47I	GGWCC	8 cut(s)	439, 549, 901, 1149, 2044, 2300, 2598, 2623
Eco47III	AGCGCT	1 cut(s)	3015
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	2201
Eco57I	CTGAAG	5 cut(s)	200, 256, 1305, 2321, 2816
Eco81I	CCTNAGG	1 cut(s)	545
Eco91I	GGTNACC	1 cut(s)	1940
EcoICRI	GAGCTC	1 cut(s)	2201
EcoNI	CCTNNNNNAGG	2 cut(s)	870, 2618
EcoO109I	RGGNCCY	2 cut(s)	222, 2300
EcoO65I	GGTNACC	1 cut(s)	1940
EcoRI	GAATTC	1 cut(s)	932
EcoRII	CCWGG	8 cut(s)	224, 257, 304, 799, 1530, 2013, 2578, 2829
EcoRV	GATATC	2 cut(s)	2804, 2923
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	2203
EgeI	GGCGCC	1 cut(s)	1430
EheI	GGCGCC	1 cut(s)	1430
ErhI	CCWWGG	1 cut(s)	120
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	7 cut(s)	410, 994, 1270, 1343, 2039, 2313, 2611
FauNDI	CATATG	2 cut(s)	381, 451
FbaI	TGATCA	2 cut(s)	2215, 2632
FblI	GTMKAC	1 cut(s)	1209
Fnu4HI	GCNGC	9 cut(s)	132, 155, 683, 828, 917, 1419, 1517, 3017, 3020
FokI	GGATG	5 cut(s)	197, 971, 1533, 1979, 2744
FriOI	GRGCYC	1 cut(s)	2203
Fsp4HI	GCNGC	9 cut(s)	132, 155, 683, 828, 917, 1419, 1517, 3017, 3020
FspBI	CTAG	4 cut(s)	24, 566, 1029, 1665
GlaI	GCGC	4 cut(s)	686, 1430, 2612, 3015
GluI	GCNGC	9 cut(s)	132, 155, 683, 828, 917, 1419, 1517, 3017, 3020
GsaI	CCCAGC	2 cut(s)	243, 513
GsuI	CTGGAG	2 cut(s)	327, 2666
HaeII	RGCGCY	4 cut(s)	688, 1432, 2614, 3017
HaeIII	GGCC	4 cut(s)	148, 224, 293, 2574
HapII	CCGG	9 cut(s)	18, 137, 149, 533, 562, 1194, 1311, 1750, 2679
HgaI	GACGC	1 cut(s)	2450
HhaI	GCGC	4 cut(s)	687, 1431, 2613, 3016
Hin1I	GRCGYC	1 cut(s)	1429
Hin6I	GCGC	4 cut(s)	685, 1429, 2611, 3014
HinP1I	GCGC	4 cut(s)	685, 1429, 2611, 3014
HpaII	CCGG	9 cut(s)	18, 137, 149, 533, 562, 1194, 1311, 1750, 2679
HphI	GGTGA	5 cut(s)	998, 1719, 1892, 2195, 2862
Hpy166II	GTNNAC	6 cut(s)	459, 722, 1210, 1600, 2079, 3007
Hpy8I	GTNNAC	6 cut(s)	459, 722, 1210, 1600, 2079, 3007
Hpy99I	CGWCG	2 cut(s)	1479, 2466
HpyAV	CCTTC	9 cut(s)	773, 802, 1300, 1683, 1837, 1877, 1931, 2564, 2722
HpyCH4III	ACNGT	5 cut(s)	581, 726, 2083, 2285, 2994
HpyCH4IV	ACGT	3 cut(s)	1858, 1982, 2976
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 131, 154, 163, 230, 2198, 2957, 3013, 3025
HpySE526I	ACGT	3 cut(s)	1858, 1982, 2976
Hsp92I	GRCGYC	1 cut(s)	1429
HspAI	GCGC	4 cut(s)	685, 1429, 2611, 3014
KasI	GGCGCC	1 cut(s)	1428
Kpn2I	TCCGGA	2 cut(s)	1749, 2678
Ksp22I	TGATCA	2 cut(s)	2215, 2632
LguI	GCTCTTC	3 cut(s)	1239, 2700, 2829
LmnI	GCTCC	6 cut(s)	585, 2198, 2326, 2512, 2526, 2681
Lsp1109I	GCAGC	7 cut(s)	118, 694, 839, 1430, 1528, 3003, 3031
LweI	GCATC	3 cut(s)	657, 1231, 1712
MabI	ACCWGGT	1 cut(s)	1530
MaeI	CTAG	4 cut(s)	24, 566, 1029, 1665
MaeII	ACGT	3 cut(s)	1858, 1982, 2976
MaeIII	GTNAC	8 cut(s)	370, 620, 629, 1073, 1725, 1940, 2132, 2428
MfeI	CAATTG	1 cut(s)	3030
MflI	RGATCY	4 cut(s)	397, 832, 1090, 1316
MhlI	GDGCHC	4 cut(s)	1234, 2203, 2320, 3009
Mly113I	GGCGCC	1 cut(s)	1429
MlyI	GAGTC	3 cut(s)	649, 1210, 2246
MmeI	TCCRAC	4 cut(s)	417, 683, 1084, 2548
MroI	TCCGGA	2 cut(s)	1749, 2678
MseI	TTAA	5 cut(s)	1539, 1635, 1821, 2607, 3037
MspA1I	CMGCKG	1 cut(s)	1421
MspI	CCGG	9 cut(s)	18, 137, 149, 533, 562, 1194, 1311, 1750, 2679
MunI	CAATTG	1 cut(s)	3030
Mva1269I	GAATGC	2 cut(s)	867, 1996
MvaI	CCWGG	8 cut(s)	226, 259, 306, 801, 1532, 2015, 2580, 2831
MwoI	GCNNNNNNNGC	9 cut(s)	38, 131, 154, 163, 230, 2198, 2957, 3013, 3025
NarI	GGCGCC	1 cut(s)	1429
NciI	CCSGG	3 cut(s)	19, 137, 562
NdeI	CATATG	2 cut(s)	381, 451
NheI	GCTAGC	1 cut(s)	1664
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	3 cut(s)	1073, 1725, 2428
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	161
PagI	TCATGA	1 cut(s)	2008
PceI	AGGCCT	1 cut(s)	293
PciSI	GCTCTTC	3 cut(s)	1239, 2700, 2829
PctI	GAATGC	2 cut(s)	867, 1996
PfeI	GAWTC	7 cut(s)	254, 526, 1171, 1586, 1642, 1719, 2146
PflMI	CCANNNNNTGG	1 cut(s)	2053
PkrI	GCNGC	9 cut(s)	133, 156, 684, 829, 918, 1420, 1518, 3018, 3021
PleI	GAGTC	3 cut(s)	649, 1210, 2245
PluTI	GGCGCC	1 cut(s)	1432
PpsI	GAGTC	3 cut(s)	649, 1210, 2245
PpuMI	RGGWCCY	1 cut(s)	2300
PsiI	TTATAA	1 cut(s)	2618
Psp124BI	GAGCTC	1 cut(s)	2203
Psp5II	RGGWCCY	1 cut(s)	2300
Psp6I	CCWGG	8 cut(s)	224, 257, 304, 799, 1530, 2013, 2578, 2829
PspEI	GGTNACC	1 cut(s)	1940
PspFI	CCCAGC	2 cut(s)	239, 509
PspGI	CCWGG	8 cut(s)	224, 257, 304, 799, 1530, 2013, 2578, 2829
PspPI	GGNCC	9 cut(s)	222, 439, 549, 901, 1149, 2044, 2300, 2598, 2623
PspPPI	RGGWCCY	1 cut(s)	2300
PstI	CTGCAG	2 cut(s)	414, 3021
PstNI	CAGNNNCTG	3 cut(s)	131, 983, 2963
PsuI	RGATCY	4 cut(s)	397, 832, 1090, 1316
PvuII	CAGCTG	1 cut(s)	1421
RsaI	GTAC	9 cut(s)	721, 946, 974, 1529, 1981, 2004, 2163, 2271, 2858
RsaNI	GTAC	9 cut(s)	720, 945, 973, 1528, 1980, 2003, 2162, 2270, 2857
SacI	GAGCTC	1 cut(s)	2203
SapI	GCTCTTC	3 cut(s)	1239, 2700, 2829
SaqAI	TTAA	5 cut(s)	1539, 1635, 1821, 2607, 3037
SatI	GCNGC	9 cut(s)	132, 155, 683, 828, 917, 1419, 1517, 3017, 3020
Sau96I	GGNCC	9 cut(s)	222, 439, 549, 901, 1149, 2044, 2300, 2598, 2623
SchI	GAGTC	3 cut(s)	649, 1210, 2246
SduI	GDGCHC	4 cut(s)	1234, 2203, 2320, 3009
SexAI	ACCWGGT	1 cut(s)	1530
SfaNI	GCATC	3 cut(s)	657, 1231, 1712
SfcI	CTRYAG	2 cut(s)	410, 3017
SfoI	GGCGCC	1 cut(s)	1430
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	8 cut(s)	439, 549, 901, 1149, 2044, 2300, 2598, 2623
SmlI	CTYRAG	2 cut(s)	2202, 2984
SmoI	CTYRAG	2 cut(s)	2202, 2984
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	4 cut(s)	155, 614, 916, 2485
SspDI	GGCGCC	1 cut(s)	1428
SspMI	CTAG	4 cut(s)	24, 566, 1029, 1665
SstI	GAGCTC	1 cut(s)	2203
StuI	AGGCCT	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	5 cut(s)	581, 726, 2083, 2285, 2994
TaiI	ACGT	3 cut(s)	1861, 1985, 2979
TaqI	TCGA	8 cut(s)	59, 88, 161, 1021, 1477, 1951, 2138, 2875
TatI	WGTACW	4 cut(s)	719, 972, 2002, 2269
TauI	GCSGC	2 cut(s)	157, 919
TfiI	GAWTC	7 cut(s)	254, 526, 1171, 1586, 1642, 1719, 2146
Tru1I	TTAA	5 cut(s)	1539, 1635, 1821, 2607, 3037
Tru9I	TTAA	5 cut(s)	1539, 1635, 1821, 2607, 3037
TseFI	GTSAC	3 cut(s)	1073, 1725, 2428
TseI	GCWGC	7 cut(s)	131, 682, 827, 1418, 1516, 3016, 3019
Tsp45I	GTSAC	3 cut(s)	1073, 1725, 2428
Van91I	CCANNNNNTGG	1 cut(s)	2053
VneI	GTGCAC	1 cut(s)	3005
VpaK11BI	GGWCC	8 cut(s)	439, 549, 901, 1149, 2044, 2300, 2598, 2623
XagI	CCTNNNNNAGG	2 cut(s)	870, 2618
XapI	RAATTY	5 cut(s)	277, 932, 1816, 2397, 2545
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	1209
XspI	CTAG	4 cut(s)	24, 566, 1029, 1665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.