Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

11117763 .. 11127502

Gene Structure 9740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

ATGAGGTGGTTTAGAGCAGGGTGTGGTGTGGCAAAGCTTGCCATTAGGAGATCAGTATCGAGTAGTGGATCATACACTGTGACAAGGCGTGTTATTCCGTCGCAGAATCGGTACTTGCACACAACAATATGCAAGTCGAAGGCAGAAGCTGCGCCGGTTCCTCGTCCGGTGCCCCTTTCTAGGCTCACTGATAGTTTCTTGGATGGAACCAGCAGTGTGTATTTGGAAGGGCTTCAGAGGGCCTGGGAAGCTGACCCCAATAGCGTTGATGAGTCGTGGGATAATTTCTTTAGGAATTTTGTGGGTCAGGCCTCTACGTCGCCTGGGATCTCGGGGCAAACCATTCAAGAGAGTATGCGTTTGTTGTTGCTCGTGAGGGCTTACCAGGTTAATGGTCACATGAAAGCTAAACTAGATCCTTTGGGCTTGGAGGAGAGAGAAATCCCAGATGATTTGGACCCTGCGCTGTATGGGTTCACCGAGGCTGATCTTGATAGGGAGTTCTTTTTAGGGGTTTGGAAGATGGCTGGGTTTCTTTCTGAGAATCGTCCAGTGCAGACCCTTAGGTCCATATTGACTCGGCTTGAGCAGGCCTACTGTGGGAGCATTGGGTATGAGTATATGCATATTGCCGATCGAAACAAATGTAACTGGTTGAGAGATAAGATTGAGACCCCGACGACGATGCAATACAACAGGCAGCGCCGTGAGGTTATTCTTGACAGGCTTATTTGGAGTACACAGTTTGAGAACTTCTTGGCCACTAAGTGGACAACAGCAAAGAGGTTTGGGCTTGAAGGTTGTGAAACTCTCATTCCTGGTATGAAGGAGATGTTTGATAGGGCAGCAGATCTCGGGGTTGAGAGCATAGTGATTGGAATGCCTCACAGAGGAAGATTGAATGTATTGGGTAATGTGGTCCGAAAGCCTTTGCGTCAGATATTTAGTGAATTCAGTGGCGGCACAAAGCCTGTAGATGAAGTTGGGCTTTACACAGGGACTGGTGATGTCAAGTATCACTTGGGAACTTCTTATGATCGACCGACTAGAGGTGGGAAGAGAATTCATCTATCTTTGGTTGCAAATCCAAGTCACTTGGAAGCTGTGGATCCAGTTGTTGTTGGAAAAACTAGAGCAAAGCAGTATTATTCAAATGATGTGGACAGAACCAAGAATATGGGGGTTTTGATCCATGGAGATGGTAGCTTTGCTGGACAAGGTGTGGTCTACGAGACTCTGCATCTTAGTGCTCTTCCTAATTACACCACTGGCGGGACCATACACATTGTGGTGAACAACCAAGTTGCCTTCACGACTGACCCAATGTCTGGTAGATCTTCAGAGTACTGCACTGATGTTGCTAAAGCCTTGAATGCCCCTATCTTCCACGTAAATGCTGATGATATGGAGGCAGTCGTTCATGTCTGTGAGCTTGCAGCTGAGTGGCGCCAGACTTTCCATTCTGATGTTGTAGTTGATTTAGTTTGTTATCGTCGATTTGGGCATAATGAGATTGATGAGCCGTCATTTACGCAGCCCAAAATGTACAAGGTTATTAGGAGTCATCCAAATCCTCTAACTATTTACAAGAACAAACTTTTGGAATCTGGACAAGTGAACAAAGATGATATTGAGAGGATACAGAGCAAGGTTAATACGATTCTAAACGAAGAGTTCTTAGCTAGCAAAGATTATGTTCCTCAAAGAAGGGACTGGCTTTCATCTCATTGGTCTGGGTTCAAGTCACCTGAACAGCTTTCTCGTATCCGTAATACTGGTGTAAAACCAGATATTTTGAAGAATGTTGGCAAAGCGATCACAGCCCTACCTGAAAATTTTAAGCCTCACAGAGCAGTAAAGAAGGTATATGGAGAACGTGCACAAATGATTGAGACTGGTGAAGGCATCGACTGGGCTGTTGGAGAAGCACTTGCCTTTGCTACACTGCTAGTAGAGGGTAATCATGTAAGATTGAGTGGACAGGATGTTGAAAGAGGTACATTTAGTCATCGACATGCTGTACTTCACGACCAGGAAACAGGGGAAAGGTATTGCCCTCTGGATCATGTTATAGCGAACCAAGATGAGGAGATGTTTACAGTTAGCAACAGCTCACTTTCGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAGAATCCAAATGCATTGGTGATTTGGGAAGCTCAATTTGGTGATTTTGCCAATGGGGCTCAAGTTATATTTGATCAGTTTTTGAGCAGCGGGGAGTCAAAGTGGCTTCGCCAAACTGGGCTTGTTTTACTGCTTCCACATGGTTATGATGGTCAGGGACCTGAACATTCTAGTGCAAGATTGGAGCGATTTCTTCAGATGAGTGATGACAATCCTTATGTCATACCTGAGATGGATCCTACACTTCGGAAGCAAATTCAGGAATGCAATTGGCAGATTGTGAATGTGACCACTCCTGCTAATTATTTCCATGTCCTGCGTCGTCAGATAAACAGGGAGTTCCGCAAACCTCTTGTTGTCATGGCTCCTAAAAACTTGCTTCGGCACAAGGACTGCAAATCAAATTTATCTGAGTTTGATGATGTTCAAGGCCACCCAGGGTTTGACAAGCAGGGAACCAGATTTAAGCGCCTCATTAAAGATCAAAATGACCACTCTGATCTGGAGGAGGGTATCAGACGGCTTGTTCTTTGCTCTGGGAAGATTTATTATGAGCTTGATGAAGAGCGAAGAAAGACCAGTGCAAAGGATGTTGCAATATGTAGACTGGAACAGCTTTGCCCCTTCCCATATGACCTCATCCAGCGAGAGCTGAAGCGATATCCTAATGCTGAGATAGTTTGGTGCCAGGAAGAGCCAATGAACATGGGTGGCTATAGCTACATTCAACCTCGCCTATGCACTGCCATGAAGTCGCTGAGCAGAGGAACTATTGACGACATCAAATATATTGGCCGCGCTCCATCTGCTGCCACAGCCACTGGTTTCTATCAAGTTCACCTCAAGGAACAAGCAGACATTGTTCACAAAGCACTGCAGCCTGAGCCAATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

1018

Amino Acids

115.37

Weight (kDa)

6.53

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-oxogl_dehyd_N	PF16078	64 - 101	3.7e-14	2-oxoglutarate dehydrogenase N-terminus
E1_dh	PF00676	245 - 565	7.1e-60	Dehydrogenase E1 component
Transket_pyr	PF02779	635 - 848	8.4e-49	Transketolase, pyrimidine binding domain
OxoGdeHyase_C	PF16870	871 - 1012	8.6e-50	2-oxoglutarate dehydrogenase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB1I	GGYRCC	3 cut(s)	169, 1446, 2844
AccB7I	CCANNNNNTGG	2 cut(s)	768, 1328
AccI	GTMKAC	2 cut(s)	1227, 2764
AccII	CGCG	1 cut(s)	2958
AciI	CCGC	5 cut(s)	960, 1272, 2250, 2503, 2956
AclWI	GGATC	9 cut(s)	76, 335, 410, 1103, 1116, 1183, 2070, 2390, 2403
AcoI	YGGCCR	2 cut(s)	759, 2953
AcsI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
AcuI	CTGAAG	4 cut(s)	218, 1323, 2339, 2834
AcyI	GRCGYC	1 cut(s)	1447
AdeI	CACNNNGTG	2 cut(s)	768, 1288
AfaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1999, 2022
AfiI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
AhdI	GACNNNNNGTC	1 cut(s)	1324
AjnI	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
AjuI	GAANNNNNNNTTGG	4 cut(s)	1583, 1615, 2181, 2213
Alw21I	GWGCWC	2 cut(s)	1252, 1882
Alw26I	GTCTC	3 cut(s)	665, 1226, 1886
Alw44I	GTGCAC	1 cut(s)	1878
AlwI	GGATC	9 cut(s)	76, 335, 410, 1103, 1116, 1183, 2070, 2390, 2403
AlwNI	CAGNNNCTG	3 cut(s)	149, 1001, 2981
Ama87I	CYCGRG	2 cut(s)	331, 854
AoxI	GGCC	6 cut(s)	240, 309, 591, 759, 2590, 2953
ApaLI	GTGCAC	1 cut(s)	1878
ApeKI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2247, 2969, 3037
ApoI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
AspS9I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
AsuHPI	GGTGA	8 cut(s)	469, 1016, 1303, 1737, 1910, 2191, 2213, 2990
AsuNHI	GCTAGC	1 cut(s)	1682
AvaI	CYCGRG	2 cut(s)	331, 854
AvaII	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
AxyI	CCTNAGG	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	174, 1882
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	2 cut(s)	1108, 2395
BanI	GGYRCC	3 cut(s)	169, 1446, 2844
BanII	GRGCYC	1 cut(s)	2221
BauI	CACGAG	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	1252, 1882
BbvI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BccI	CCATC	6 cut(s)	197, 517, 1193, 2303, 2386, 2971
BceAI	ACGGC	3 cut(s)	690, 1507, 2696
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BciT130I	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BciVI	GTATCC	2 cut(s)	1632, 1775
BclI	TGATCA	1 cut(s)	2233
BcoDI	GTCTC	3 cut(s)	665, 1226, 1886
BfaI	CTAG	7 cut(s)	180, 413, 1047, 1131, 1683, 1949, 2331
BfmI	CTRYAG	3 cut(s)	972, 2875, 3035
BfoI	RGCGCY	3 cut(s)	706, 1450, 2632
BfuI	GTATCC	2 cut(s)	1632, 1775
BglI	GCCNNNNNGGC	1 cut(s)	2216
BglII	AGATCT	2 cut(s)	850, 1334
BlpI	GCTNAGC	1 cut(s)	2918
BmcAI	AGTACT	1 cut(s)	1346
Bme1390I	CCNGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
Bme18I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
BmeRI	GACNNNNNGTC	1 cut(s)	1324
BmeT110I	CYCGRG	2 cut(s)	331, 854
BmgT120I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
BmrFI	CCNGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BmrI	ACTGGG	2 cut(s)	1921, 2286
BmsI	GCATC	3 cut(s)	675, 1249, 1914
BmtI	GCTAGC	1 cut(s)	1686
BmuI	ACTGGG	2 cut(s)	1921, 2286
BpmI	CTGGAG	1 cut(s)	2684
Bpu10I	CCTNAGC	1 cut(s)	3042
Bpu1102I	GCTNAGC	1 cut(s)	2918
BpuEI	CTTGAG	3 cut(s)	605, 2205, 2987
Bsa29I	ATCGAT	1 cut(s)	3051
BsaAI	YACGTR	1 cut(s)	1390
BsaBI	GATNNNNATC	2 cut(s)	55, 2370
BsaHI	GRCGYC	1 cut(s)	1447
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	6 cut(s)	243, 323, 480, 1192, 2596, 2597
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	2246, 2276
Bsc4I	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
Bse118I	RCCGGY	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	563
Bse8I	GATNNNNATC	2 cut(s)	55, 2370
BseBI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BseCI	ATCGAT	1 cut(s)	3051
BseDI	CCNNGG	6 cut(s)	243, 323, 480, 1192, 2596, 2597
BseGI	GGATG	5 cut(s)	208, 1564, 1990, 2755, 2799
BseJI	GATNNNNATC	2 cut(s)	55, 2370
BseLI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
BseMII	CTCAG	7 cut(s)	531, 1431, 2379, 2562, 2823, 2909, 3033
BseRI	GAGGAG	3 cut(s)	446, 2102, 2681
BseSI	GKGCMC	2 cut(s)	174, 1882
BseXI	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	575, 1333
Bsh1236I	CGCG	1 cut(s)	2958
Bsh1285I	CGRYCG	2 cut(s)	637, 1043
BshFI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BshNI	GGYRCC	3 cut(s)	169, 1446, 2844
BshVI	ATCGAT	1 cut(s)	3051
BsiEI	CGRYCG	2 cut(s)	637, 1043
BsiHKAI	GWGCWC	2 cut(s)	1252, 1882
BsiHKCI	CYCGRG	2 cut(s)	331, 854
BsiSI	CCGG	2 cut(s)	155, 167
BslFI	GGGAC	4 cut(s)	1012, 1288, 1724, 2331
BslI	CCNNNNNNNGG	8 cut(s)	180, 600, 768, 890, 1049, 1272, 1328, 2086
BsmAI	GTCTC	3 cut(s)	665, 1226, 1886
BsmFI	GGGAC	4 cut(s)	1012, 1288, 1724, 2331
BsmI	GAATGC	3 cut(s)	885, 1378, 2429
BsnI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
Bso31I	GGTCTC	1 cut(s)	665
BsoBI	CYCGRG	2 cut(s)	331, 854
Bsp1286I	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
Bsp1407I	TGTACA	1 cut(s)	1545
Bsp1720I	GCTNAGC	1 cut(s)	2918
Bsp19I	CCATGG	1 cut(s)	1192
BspACI	CCGC	5 cut(s)	960, 1272, 2250, 2503, 2956
BspANI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BspCNI	CTCAG	7 cut(s)	532, 1432, 2380, 2563, 2824, 2910, 3034
BspDI	ATCGAT	1 cut(s)	3051
BspFNI	CGCG	1 cut(s)	2958
BspMAI	CTGCAG	1 cut(s)	3039
BspOI	GCTAGC	1 cut(s)	1686
BspPI	GGATC	9 cut(s)	76, 335, 410, 1103, 1116, 1183, 2070, 2390, 2403
BspQI	GCTCTTC	3 cut(s)	1257, 2718, 2847
BspT107I	GGYRCC	3 cut(s)	169, 1446, 2844
BspTNI	GGTCTC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	1545
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	6 cut(s)	243, 323, 480, 1192, 2596, 2597
BssNI	GRCGYC	1 cut(s)	1447
BssSI	CACGAG	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
Bst4CI	ACNGT	4 cut(s)	79, 599, 744, 2101
Bst6I	CTCTTC	5 cut(s)	1052, 1257, 1665, 2718, 2847
BstACI	GRCGYC	1 cut(s)	1447
BstAPI	GCANNNNNTGC	2 cut(s)	38, 149
BstAUI	TGTACA	1 cut(s)	1545
BstBAI	YACGTR	1 cut(s)	1390
BstC8I	GCNNGC	4 cut(s)	39, 591, 1434, 1684
BstDSI	CCRYGG	1 cut(s)	1192
BstENI	CCTNNNNNAGG	1 cut(s)	888
BstF5I	GGATG	5 cut(s)	208, 1564, 1990, 2755, 2799
BstFNI	CGCG	1 cut(s)	2958
BstH2I	RGCGCY	3 cut(s)	706, 1450, 2632
BstHHI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
BstMAI	GTCTC	3 cut(s)	665, 1226, 1886
BstMCI	CGRYCG	2 cut(s)	637, 1043
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
BstNI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
BstNSI	RCATGY	1 cut(s)	2018
BstSCI	CCNGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
BstSFI	CTRYAG	3 cut(s)	972, 2875, 3035
BstSLI	GKGCMC	2 cut(s)	174, 1882
BstUI	CGCG	1 cut(s)	2958
BstV1I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
BstX2I	RGATCY	6 cut(s)	327, 415, 850, 1108, 1334, 2395
BstXI	CCANNNNNNTGG	3 cut(s)	392, 1177, 1199
BstYI	RGATCY	6 cut(s)	327, 415, 850, 1108, 1334, 2395
Bsu15I	ATCGAT	1 cut(s)	3051
Bsu36I	CCTNAGG	1 cut(s)	563
BsuI	GTATCC	2 cut(s)	1632, 1775
BsuRI	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
BsuTUI	ATCGAT	1 cut(s)	3051
BtgI	CCRYGG	1 cut(s)	1192
BtsCI	GGATG	5 cut(s)	208, 1564, 1990, 2755, 2799
BtsI	GCAGTG	4 cut(s)	220, 1943, 2901, 3032
Cac8I	GCNNGC	4 cut(s)	39, 591, 1434, 1684
CaiI	CAGNNNCTG	3 cut(s)	149, 1001, 2981
CfoI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
ClaI	ATCGAT	1 cut(s)	3051
CseI	GACGC	2 cut(s)	923, 2468
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
CspCI	CAANNNNNGTGG	2 cut(s)	1140, 1175
CviQI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
DinI	GGCGCC	1 cut(s)	1448
DraIII	CACNNNGTG	2 cut(s)	768, 1288
DrdI	GACNNNNNNGTC	1 cut(s)	565
DriI	GACNNNNNGTC	1 cut(s)	1324
DseDI	GACNNNNNNGTC	1 cut(s)	565
EaeI	YGGCCR	2 cut(s)	759, 2953
Eam1104I	CTCTTC	5 cut(s)	1052, 1257, 1665, 2718, 2847
Eam1105I	GACNNNNNGTC	1 cut(s)	1324
EarI	CTCTTC	5 cut(s)	1052, 1257, 1665, 2718, 2847
Eco130I	CCWWGG	1 cut(s)	1192
Eco147I	AGGCCT	2 cut(s)	311, 593
Eco24I	GRGCYC	1 cut(s)	2221
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	2822
Eco47I	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
Eco57I	CTGAAG	4 cut(s)	218, 1323, 2339, 2834
Eco81I	CCTNAGG	1 cut(s)	563
Eco88I	CYCGRG	2 cut(s)	331, 854
EcoNI	CCTNNNNNAGG	1 cut(s)	888
EcoO109I	RGGNCCY	2 cut(s)	240, 2318
EcoRI	GAATTC	2 cut(s)	950, 1062
EcoRII	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
EcoRV	GATATC	1 cut(s)	2822
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	2 cut(s)	627, 2176
EcoT38I	GRGCYC	1 cut(s)	2221
EgeI	GGCGCC	1 cut(s)	1448
EheI	GGCGCC	1 cut(s)	1448
ErhI	CCWWGG	1 cut(s)	1192
FalI	AAGNNNNNCTT	4 cut(s)	972, 1004, 1004, 1036
FaqI	GGGAC	4 cut(s)	1012, 1288, 1724, 2331
FauI	CCCGC	2 cut(s)	1265, 2243
FauNDI	CATATG	1 cut(s)	2791
FbaI	TGATCA	1 cut(s)	2233
FblI	GTMKAC	2 cut(s)	1227, 2764
FokI	GGATG	5 cut(s)	215, 1551, 1997, 2762, 2786
FriOI	GRGCYC	1 cut(s)	2221
FspBI	CTAG	7 cut(s)	180, 413, 1047, 1131, 1683, 1949, 2331
GlaI	GCGC	6 cut(s)	153, 465, 704, 1448, 2630, 2959
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	2684
HaeII	RGCGCY	3 cut(s)	706, 1450, 2632
HaeIII	GGCC	6 cut(s)	242, 311, 593, 761, 2592, 2955
HapII	CCGG	2 cut(s)	155, 167
HgaI	GACGC	2 cut(s)	923, 2468
HhaI	GCGC	6 cut(s)	154, 466, 705, 1449, 2631, 2960
Hin1I	GRCGYC	1 cut(s)	1447
Hin6I	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
HinP1I	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	2 cut(s)	155, 167
HphI	GGTGA	8 cut(s)	469, 1016, 1303, 1737, 1910, 2191, 2213, 2990
Hpy99I	CGWCG	6 cut(s)	103, 322, 682, 685, 1497, 2484
HpyAV	CCTTC	9 cut(s)	133, 221, 791, 820, 1318, 1701, 1855, 1895, 2794
HpyCH4III	ACNGT	4 cut(s)	79, 599, 744, 2101
HpyCH4IV	ACGT	3 cut(s)	317, 1389, 1876
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
HpySE526I	ACGT	3 cut(s)	317, 1389, 1876
Hsp92I	GRCGYC	1 cut(s)	1447
HspAI	GCGC	6 cut(s)	152, 464, 703, 1447, 2629, 2958
KasI	GGCGCC	1 cut(s)	1446
Ksp22I	TGATCA	1 cut(s)	2233
LguI	GCTCTTC	3 cut(s)	1257, 2718, 2847
LmnI	GCTCC	4 cut(s)	603, 2344, 2530, 2965
Lsp1109I	GCAGC	8 cut(s)	136, 712, 857, 1448, 1546, 2259, 2956, 3049
LweI	GCATC	3 cut(s)	675, 1249, 1914
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	7 cut(s)	180, 413, 1047, 1131, 1683, 1949, 2331
MaeII	ACGT	3 cut(s)	317, 1389, 1876
MaeIII	GTNAC	7 cut(s)	79, 395, 647, 1091, 1743, 2150, 2446
MfeI	CAATTG	1 cut(s)	2428
MflI	RGATCY	6 cut(s)	327, 415, 850, 1108, 1334, 2395
MhlI	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
MlsI	TGGCCA	1 cut(s)	761
MluNI	TGGCCA	1 cut(s)	761
Mly113I	GGCGCC	1 cut(s)	1447
MlyI	GAGTC	5 cut(s)	281, 571, 1228, 1570, 2264
MmeI	TCCRAC	2 cut(s)	1102, 1900
Mox20I	TGGCCA	1 cut(s)	761
Mph1103I	ATGCAT	2 cut(s)	627, 2176
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	1439, 2250
MspI	CCGG	2 cut(s)	155, 167
MspR9I	CCNGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
MunI	CAATTG	1 cut(s)	2428
Mva1269I	GAATGC	3 cut(s)	885, 1378, 2429
MvaI	CCWGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
MvnI	CGCG	1 cut(s)	2958
MwoI	GCNNNNNNNGC	9 cut(s)	38, 149, 248, 1373, 1820, 2216, 2966, 2975, 3043
NarI	GGCGCC	1 cut(s)	1447
NcoI	CCATGG	1 cut(s)	1192
NdeI	CATATG	1 cut(s)	2791
NheI	GCTAGC	1 cut(s)	1682
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	5 cut(s)	79, 395, 1091, 1743, 2446
NsiI	ATGCAT	2 cut(s)	627, 2176
NspI	RCATGY	1 cut(s)	2018
PasI	CCCWGGG	1 cut(s)	2597
PceI	AGGCCT	2 cut(s)	311, 593
PciSI	GCTCTTC	3 cut(s)	1257, 2718, 2847
PctI	GAATGC	3 cut(s)	885, 1378, 2429
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2164
PflMI	CCANNNNNTGG	2 cut(s)	768, 1328
Ple19I	CGATCG	1 cut(s)	637
PleI	GAGTC	5 cut(s)	280, 571, 1228, 1569, 2263
PluTI	GGCGCC	1 cut(s)	1450
PpsI	GAGTC	5 cut(s)	280, 571, 1228, 1569, 2263
Ppu21I	YACGTR	1 cut(s)	1390
PpuMI	RGGWCCY	1 cut(s)	2318
Psp5II	RGGWCCY	1 cut(s)	2318
Psp6I	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
PspPI	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
PspPPI	RGGWCCY	1 cut(s)	2318
PstI	CTGCAG	1 cut(s)	3039
PstNI	CAGNNNCTG	3 cut(s)	149, 1001, 2981
PsuI	RGATCY	6 cut(s)	327, 415, 850, 1108, 1334, 2395
PvuI	CGATCG	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	6 cut(s)	113, 739, 1346, 1547, 1999, 2022
RsaNI	GTAC	6 cut(s)	112, 738, 1345, 1546, 1998, 2021
SapI	GCTCTTC	3 cut(s)	1257, 2718, 2847
SaqAI	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Sau96I	GGNCC	6 cut(s)	240, 457, 567, 919, 1275, 2318
ScaI	AGTACT	1 cut(s)	1346
SchI	GAGTC	5 cut(s)	281, 571, 1228, 1570, 2264
ScrFI	CCNGG	7 cut(s)	244, 324, 386, 819, 2033, 2598, 2849
SduI	GDGCHC	4 cut(s)	174, 1252, 1882, 2221
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	3 cut(s)	675, 1249, 1914
SfcI	CTRYAG	3 cut(s)	972, 2875, 3035
SfoI	GGCGCC	1 cut(s)	1448
SinI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
SmlI	CTYRAG	3 cut(s)	584, 2220, 3002
SmoI	CTYRAG	3 cut(s)	584, 2220, 3002
SseBI	AGGCCT	2 cut(s)	311, 593
SsiI	CCGC	5 cut(s)	960, 1272, 2250, 2503, 2956
SspDI	GGCGCC	1 cut(s)	1446
SspMI	CTAG	7 cut(s)	180, 413, 1047, 1131, 1683, 1949, 2331
StuI	AGGCCT	2 cut(s)	311, 593
StyD4I	CCNGG	7 cut(s)	242, 322, 384, 817, 2031, 2596, 2847
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	4 cut(s)	79, 599, 744, 2101
TaiI	ACGT	3 cut(s)	320, 1392, 1879
TaqI	TCGA	8 cut(s)	59, 137, 637, 1039, 1495, 1908, 2011, 3051
TaqII	GACCGA	1 cut(s)	1057
TatI	WGTACW	4 cut(s)	737, 1344, 1545, 2020
TauI	GCSGC	2 cut(s)	963, 2958
TfiI	GAWTC	5 cut(s)	106, 544, 1604, 1660, 2164
Tru1I	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
Tru9I	TTAA	6 cut(s)	390, 1653, 1839, 2625, 2637, 3055
TseFI	GTSAC	5 cut(s)	79, 395, 1091, 1743, 2446
TseI	GCWGC	8 cut(s)	149, 700, 845, 1436, 1534, 2247, 2969, 3037
Tsp45I	GTSAC	5 cut(s)	79, 395, 1091, 1743, 2446
TspDTI	ATGAA	9 cut(s)	416, 839, 993, 1055, 1409, 1710, 2736, 2876, 2924
TspGWI	ACGGA	2 cut(s)	87, 1757
Van91I	CCANNNNNTGG	2 cut(s)	768, 1328
VneI	GTGCAC	1 cut(s)	1878
VpaK11BI	GGWCC	5 cut(s)	457, 567, 919, 1275, 2318
XagI	CCTNNNNNAGG	1 cut(s)	888
XapI	RAATTY	6 cut(s)	295, 950, 1062, 1834, 2415, 2563
XceI	RCATGY	1 cut(s)	2018
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XmiI	GTMKAC	2 cut(s)	1227, 2764
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	7 cut(s)	180, 413, 1047, 1131, 1683, 1949, 2331
ZrmI	AGTACT	1 cut(s)	1346
Zsp2I	ATGCAT	2 cut(s)	627, 2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.