Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

44562104 .. 44562715

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGTCATCACCGTTGTATGGACGATCTATGAGCATGGTTAGGCTCGCGTTGGCAAGAGTGACACAACGACACTGGGTTGCTTGTTTTTGTGCCTCTCTTTGGTTTATTTGGCAAACAAGGAATAAGGTGAGATATGATGACATTACTCCAGATGTTGCTATGGCTTGCAGGTTAATTAATGGCCATGTTTATGCTTCTAGTCGCATAGCTACTGGACATATGTTTGACAACATACAGGAGCTTTGTGTCTTGAAGAGGTTTGGAGCTACTTGTAGACCGCGTTGTGCCCCAAAAGTTTACGAGGTGAATTGGCAACCACCCATTATTGGTTGGTTCAAAGTTAACACGGATGGTGCCTGGAAGAGAGGGGAGGATCATTCAGGTTATGGTGGAGTTTTTTGTGATTTCCATGGGGAGGTTGTCAGTGCTTTTTCATCATCCCTTGACATTCCTAGTTCCATTGCTGCGGAGGTTATGGCAGTGATCAAGGCAATCGAGCTTGCATGGATTCGGGATTGGAAACATATTTGGTTTGAAGTTGATTCGTCCCTAATTCTAAATTTTGTCCACTCTCCCCAAATGGTACCTTGGCAATTACATGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

8.5

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	116 - 194	4.3e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	2 cut(s)	356, 586
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	2 cut(s)	50, 283
AciI	CCGC	2 cut(s)	281, 470
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	4 cut(s)	20, 102, 329, 418
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	256, 340, 539
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	212, 244, 269, 502
AluI	AGCT	4 cut(s)	212, 244, 269, 502
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	180
Asp718I	GGTACC	1 cut(s)	586
AsuHPI	GGTGA	3 cut(s)	3, 142, 319
BaeGI	GKGCMC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	186
BanI	GGYRCC	2 cut(s)	356, 586
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	361
BclI	TGATCA	1 cut(s)	486
BfaI	CTAG	2 cut(s)	201, 456
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	358, 588
BmrFI	CCNGG	1 cut(s)	361
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	412, 590
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 102, 329, 418
Bse1I	ACTGG	2 cut(s)	80, 220
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	412, 590
BseGI	GGATG	2 cut(s)	358, 440
BseLI	CCNNNNNNNGG	4 cut(s)	20, 102, 329, 418
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	80, 220
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	2 cut(s)	50, 283
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	2 cut(s)	356, 586
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	4 cut(s)	20, 102, 329, 418
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	26, 376, 486
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	281, 470
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	50, 283
BspLI	GGNNCC	2 cut(s)	358, 588
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	384
BspT107I	GGYRCC	2 cut(s)	356, 586
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	80, 220
BssECI	CCNNGG	2 cut(s)	412, 590
BssMI	GATC	3 cut(s)	26, 376, 486
BssT1I	CCWWGG	2 cut(s)	412, 590
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	251, 359
BstC8I	GCNNGC	3 cut(s)	48, 169, 504
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	358, 440
BstFNI	CGCG	2 cut(s)	50, 283
BstKTI	GATC	3 cut(s)	29, 379, 489
BstMBI	GATC	3 cut(s)	26, 376, 486
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	292
BstUI	CGCG	2 cut(s)	50, 283
BstV1I	GCAGC	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	358, 440
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	73, 433, 489
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	48, 169, 504
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	6 cut(s)	37, 188, 413, 507, 602, 609
CviJI	RGCY	7 cut(s)	46, 167, 186, 212, 244, 269, 502
CviKI_1	RGCY	7 cut(s)	46, 167, 186, 212, 244, 269, 502
CviQI	GTAC	1 cut(s)	587
DpnI	GATC	3 cut(s)	28, 378, 488
DpnII	GATC	3 cut(s)	26, 376, 486
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	251, 359
EarI	CTCTTC	2 cut(s)	251, 359
Eco130I	CCWWGG	2 cut(s)	412, 590
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	412, 590
ErhI	CCWWGG	2 cut(s)	412, 590
FaeI	CATG	6 cut(s)	40, 191, 416, 510, 605, 612
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	6 cut(s)	36, 187, 412, 506, 601, 608
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	2 cut(s)	365, 427
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	2 cut(s)	201, 456
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	40, 191, 416, 510, 605, 612
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	511, 545
HpaI	GTTAAC	1 cut(s)	346
HphI	GGTGA	3 cut(s)	3, 142, 319
Hpy166II	GTNNAC	4 cut(s)	278, 301, 346, 571
Hpy188III	TCNNGA	3 cut(s)	152, 253, 515
Hpy8I	GTNNAC	4 cut(s)	278, 301, 346, 571
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	171, 506
Hsp92II	CATG	6 cut(s)	40, 191, 416, 510, 605, 612
KpnI	GGTACC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	486
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	26, 376, 486
LmnI	GCTCC	2 cut(s)	241, 266
LpnPI	CCDG	8 cut(s)	61, 157, 165, 201, 224, 346, 369, 373
Lsp1109I	GCAGC	1 cut(s)	454
MaeI	CTAG	2 cut(s)	201, 456
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	28, 378, 488
MboI	GATC	3 cut(s)	26, 376, 486
MboII	GAAGA	2 cut(s)	268, 376
MhlI	GDGCHC	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	186
MluCI	AATT	5 cut(s)	177, 310, 555, 562, 596
MluNI	TGGCCA	1 cut(s)	186
MnlI	CCTC	7 cut(s)	106, 252, 298, 362, 367, 412, 466
Mox20I	TGGCCA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	186
MseI	TTAA	3 cut(s)	176, 180, 345
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	50, 283
NcoI	CCATGG	1 cut(s)	412
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	3 cut(s)	26, 376, 486
NlaIII	CATG	6 cut(s)	40, 191, 416, 510, 605, 612
NlaIV	GGNNCC	2 cut(s)	358, 588
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	605
PacI	TTAATTAA	1 cut(s)	180
PciI	ACATGT	1 cut(s)	601
PfeI	GAWTC	2 cut(s)	511, 545
PkrI	GCNGC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	358, 588
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	176, 180, 345
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	26, 376, 486
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	5 cut(s)	177, 310, 555, 562, 596
SsiI	CCGC	2 cut(s)	281, 470
SspMI	CTAG	2 cut(s)	201, 456
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	412, 590
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	498
TasI	AATT	5 cut(s)	177, 310, 555, 562, 596
TfiI	GAWTC	2 cut(s)	511, 545
Tru1I	TTAA	3 cut(s)	176, 180, 345
Tru9I	TTAA	3 cut(s)	176, 180, 345
TscAI	CASTG	3 cut(s)	80, 433, 489
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	80, 433, 489
VspI	ATTAAT	1 cut(s)	180
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	2 cut(s)	201, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.