Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

17379259 .. 17380598

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTTGAGAGAGGTACATTCAGTCATCAGACATGCTGTACTTCACGATCAGGAAACGGGGCAAAGGTATTGCCCTCTGGACCATGTTATTGCGAACCAAGATGAGGAGATGTTTACGGTTAGCAACAGCTCACTGTTGGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCGATGGAGAATCCAAACACATTGGTGATTTGGGAAGCTCAATTTGGAGATTTTGCAAATGGGGCTCAAGTTATTTTTGATCCGTTTTTCAGTAGGAGGGAGTCAAAGTGGCTTTGCCAAACTGGGCTTGTTTTACTGCTTCCACATGGTTATAATGGTCAGGGACCTGAACATTCTAGTGCAAGATTGGAGCGCTTTCTTCAGATGAGTGATGACAATCCTTATGTCATACCTGAGATGGATCCTATACTTGGGAAGCAAATTCAGGAATGCAATTGGCAGGTTGTGAATATCACCACTCCTGCTAATTATTTCCATGTCCTGCGTCGTCAGATAAACAGGGAGTTCCGCATGCCTCTTGTTGTGATGGCTCCTAAAAAACTTGCTTCGGCACTAGGACTGCCAATCAAATTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

197

Amino Acids

22.46

Weight (kDa)

5.61

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	10 - 185	2.5e-34	Transketolase, pyrimidine binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	442
AciI	CCGC	1 cut(s)	520
AclWI	GGATC	3 cut(s)	245, 407, 420
AcsI	RAATTY	2 cut(s)	432, 581
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	15, 39
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	103, 422
AgsI	TTSAA	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	129, 209
AluI	AGCT	2 cut(s)	129, 209
AlwI	GGATC	3 cut(s)	245, 407, 420
Aor51HI	AGCGCT	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	432, 581
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	79, 335
AsuHPI	GGTGA	2 cut(s)	208, 457
AvaII	GGWCC	2 cut(s)	79, 335
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	238
BccI	CCATC	3 cut(s)	169, 403, 532
BfaI	CTAG	2 cut(s)	348, 566
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	442
Bme18I	GGWCC	2 cut(s)	79, 335
BmgT120I	GGNCC	2 cut(s)	79, 335
BmiI	GGNNCC	3 cut(s)	336, 414, 543
BmrI	ACTGGG	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 422
Bse1I	ACTGG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	387
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	103, 422
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	103, 422
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	446
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	46, 250, 412
BspACI	CCGC	1 cut(s)	520
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	336, 414, 543
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	3 cut(s)	245, 407, 420
BsrI	ACTGG	1 cut(s)	298
BssMI	GATC	3 cut(s)	46, 250, 412
Bst4CI	ACNGT	2 cut(s)	118, 135
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	1 cut(s)	405
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	3 cut(s)	49, 253, 415
BstMBI	GATC	3 cut(s)	46, 250, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	35, 526
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	79, 335
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	14, 38
CviAII	CATG	5 cut(s)	32, 83, 317, 488, 523
CviJI	RGCY	6 cut(s)	129, 209, 236, 283, 298, 542
CviKI_1	RGCY	6 cut(s)	129, 209, 236, 283, 298, 542
CviQI	GTAC	2 cut(s)	14, 38
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	48, 252, 414
DpnII	GATC	3 cut(s)	46, 250, 412
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	79, 335
Eco47III	AGCGCT	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	5 cut(s)	35, 86, 320, 491, 526
FaiI	YATR	9 cut(s)	33, 84, 318, 324, 396, 401, 419, 489, 524
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	5 cut(s)	31, 82, 316, 487, 522
FriOI	GRGCYC	1 cut(s)	238
FspBI	CTAG	2 cut(s)	348, 566
GlaI	GCGC	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	367
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	35, 86, 320, 491, 526
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	181, 272
HphI	GGTGA	2 cut(s)	208, 457
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	29, 375, 504, 590
Hpy188III	TCNNGA	4 cut(s)	44, 50, 77, 437
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	501
HpyCH4III	ACNGT	2 cut(s)	118, 135
HpyCH4V	TGCA	3 cut(s)	227, 353, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	35, 86, 320, 491, 526
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	46, 250, 412
LmnI	GCTCC	2 cut(s)	361, 547
MaeI	CTAG	2 cut(s)	348, 566
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	48, 252, 414
MboI	GATC	3 cut(s)	46, 250, 412
MboII	GAAGA	1 cut(s)	362
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	6 cut(s)	161, 212, 432, 445, 478, 581
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	4, 84, 97, 261, 537
MslI	CAYNNNNRTG	2 cut(s)	194, 348
MunI	CAATTG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	3 cut(s)	46, 250, 412
NlaIII	CATG	5 cut(s)	35, 86, 320, 491, 526
NlaIV	GGNNCC	3 cut(s)	336, 414, 543
NspI	RCATGY	2 cut(s)	35, 526
OliI	CACNNNNGTG	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	526
PctI	GAATGC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	336, 414, 543
PspPI	GGNCC	2 cut(s)	79, 335
PspPPI	RGGWCCY	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	2 cut(s)	15, 39
RsaNI	GTAC	2 cut(s)	14, 38
RseI	CAYNNNNRTG	2 cut(s)	194, 348
Sau3AI	GATC	3 cut(s)	46, 250, 412
Sau96I	GGNCC	2 cut(s)	79, 335
SchI	GAGTC	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	15, 68, 131, 211, 340, 406, 456
SinI	GGWCC	2 cut(s)	79, 335
SmiMI	CAYNNNNRTG	2 cut(s)	194, 348
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	6 cut(s)	161, 212, 432, 445, 478, 581
SsiI	CCGC	1 cut(s)	520
SspMI	CTAG	2 cut(s)	348, 566
TaaI	ACNGT	2 cut(s)	118, 135
TaqI	TCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	161, 212, 432, 445, 478, 581
TatI	WGTACW	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	79, 335
XapI	RAATTY	2 cut(s)	432, 581
XceI	RCATGY	2 cut(s)	35, 526
XspI	CTAG	2 cut(s)	348, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.