Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

44576838 .. 44581082

Gene Structure 4245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGAGCTGCGAAATTTTCCCAATTCCACCGGAATACCGATTCCGTCCCACCAAAAAGGAGCTGCTGTGTGACCACTTGGAGAAGAAGAATCAGTGCAAGGACTCCCAAAGCATGTCCATCATCCCTGTAATCGATCTGTACAAGCACGAGCCTCATGAGCTACCAGGACTGGCGTTCACAGGGCTGGAAAATCTGGGGAGGAAACTTTTCTTCTTTTTCTTCTTTTGGTTTACAAGGGCAGAGTCTTGGGATAGTCAGGGCAAGTGGTACTTCTTCGCTCCGCGTGATTACAAGTACCCTAACAGCAGTACTCGCTCCAACAGGACTACAGGGGAAGGGTCCTGGAAGGTCACAGGCAAGGACAAAGACATCAAGGCCCCGGGCTCCGAAGCTGTCATTGGGAGAAAGAGGATCTTGACCTTCCAAAAACGTGGAGTGCCGAAATCCCACAAGAGCGGCTGGGTTATTCATGAGTATTATCACATTCAGCCCCATTCTGACCCTCCTAAGCAGATAGGGGACTTTGTTGTCTGTTGCTTGAAGTACAAGTCAGACAACTTTGTTGTCGGTAGCGGTAGCTGCAGTATGGTTTCCGATGTTGCAAATCAGCTGGTTGAAGAAAATTTGGCGTCCAATGAGCAGTTTAATGGCACTGATGATGAAGCTGAAACTGGTGGCGGTAGGATTACTGAAGCAGAAGAATACCTGGCATATAAGACGCTGAGAGATGAGCTTCGGATTCCCATCGGAAATCAGAATGAATTCCAAGGCTCGCAAACTGATCCTTGTAATCTTTGGACCTCTGTTGAAGGTCAAGCTGATAGAAGCAATTCGTCTCATATGATTGAAGAGCGACTGGATGATCCAGAAAATATGGATTCATTCTTTCATACACCTGCGCCCCCTCAACTGCATCAGCTACATCAGTCACCGATGAATACCACCAATGTCCATAATGATGAATGCCGTAAGAGGAAATATCCATTTGAAGATAATGACTCTTCTCTTACGAAGAAGAACAATATTTCAACCAATGATGGTGATGAACTAGTCAGCAACACCACATCTAATTCTGAAAACCAAGCTGCAGATGTGATCCTAGAGGGTGACTCTGTTATCTGTCGCTTGAAGAATAAATCAGATAAGAAGGATTCTCTCATAAGTGATGAAGGGGAACCGGATAGCACGGGTGTGTCTAATTGGAAAATTCAGGCGGCACACAAAAATGATGAACCACTTTTTCATCTGCCTCAGCCTCTGGATGACTGCTGCTCCTCTGCAGTGTGGGCATCCCTAGAGCTGGAAGCTGTTCTGCAAGCCATTGGCACTAATGATGATTGTAATAAGTTGCAATCACCATGTGGAGATATTACTTCTTGTCTAGAAGACAAGAATGAAGTTTCAACCTGTGATGAAGATGAGAACATGGATGGTGTGTTTCCACAGCTATGTGACCCACCAGATGTAAATCAAGATTCACTTTTGCGTCCACTTCAGCCACAAGACTACTGCCCCTCCATACTGCAGTCACCAATATACCCAAAGCTGGGAAATGTTCCAGATGCCAATCTCTGTTTTAGTGAATGCAATGATTGGCAATCTGCATTTAAGAAAAAAAATTCAACCAATGAAGTTGACATACCAATTAGACATATCATGTCTAATTTTGAACATCAAGCTACAGATTCTAGGATTCTAGAGGTGCATCGTCAAACCAAAGAAAATATGGAGTCAGCGTTTTATCCATTTCAACCACAAGATCCAACTCTGCATTCAATGATATACACAATACCTGGAGATGATCTGCATAATATTGAATGCAATGAGTTGCAATTTTACTCTTCTGATCAAACAGCTCAGACTCCCTCCATAAACTCCAACCTACCGAAGTCATTGGGAAGGGTCTACCCTAGGGATAGTGGAGTAAGCAGCTATGATACAAACATTGAAGTAGCCCATGGATGGGAACAACATACATCTACATTAGCTATTGGAAACCCTCCAATAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

670

Amino Acids

75.69

Weight (kDa)

4.87

Isoelectric Point (pI)

53.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 159	6.5e-27	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	904
AasI	GACNNNNNNGTC	1 cut(s)	527
Acc36I	ACCTGC	1 cut(s)	904
AccBSI	CCGCTC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	1905
AccII	CGCG	1 cut(s)	283
AciI	CCGC	5 cut(s)	281, 456, 573, 678, 1214
AclWI	GGATC	5 cut(s)	419, 776, 857, 1090, 1754
AcsI	RAATTY	5 cut(s)	12, 622, 761, 1206, 1618
AcuI	CTGAAG	2 cut(s)	711, 1478
AcyI	GRCGYC	1 cut(s)	629
AdeI	CACNNNGTG	1 cut(s)	1361
AfaI	GTAC	5 cut(s)	140, 269, 296, 310, 545
AfiI	CCNNNNNNNGG	5 cut(s)	1300, 1546, 1547, 1962, 1963
AhlI	ACTAGT	1 cut(s)	1048
AjnI	CCWGG	4 cut(s)	163, 341, 705, 1792
AjuI	GAANNNNNNNTTGG	4 cut(s)	381, 413, 1756, 1788
AleI	CACNNNNGTG	1 cut(s)	1190
Alw26I	GTCTC	1 cut(s)	840
AlwI	GGATC	5 cut(s)	419, 776, 857, 1090, 1754
AlwNI	CAGNNNCTG	1 cut(s)	1258
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	6 cut(s)	6, 61, 579, 1085, 1269, 1929
ApoI	RAATTY	5 cut(s)	12, 622, 761, 1206, 1618
Asp700I	GAANNNNTTC	4 cut(s)	206, 761, 829, 1308
AspA2I	CCTAGG	1 cut(s)	1910
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	3 cut(s)	339, 376, 798
AsuC2I	CCSGG	2 cut(s)	380, 381
AsuHPI	GGTGA	5 cut(s)	921, 1052, 1118, 1347, 1521
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	339, 798
AvrII	CCTAGG	1 cut(s)	1910
BanII	GRGCYC	1 cut(s)	386
BarI	GAAGNNNNNNTAC	2 cut(s)	1623, 1655
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	1392
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	5 cut(s)	48, 566, 1072, 1256, 1941
BccI	CCATC	5 cut(s)	125, 752, 1031, 1424, 1956
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	4 cut(s)	165, 343, 707, 1794
BclI	TGATCA	1 cut(s)	1846
BcnI	CCSGG	2 cut(s)	380, 381
BcoDI	GTCTC	1 cut(s)	840
BcuI	ACTAGT	1 cut(s)	1048
BfaI	CTAG	7 cut(s)	1049, 1100, 1295, 1382, 1689, 1697, 1911
BfmI	CTRYAG	6 cut(s)	327, 580, 1086, 1278, 1523, 1680
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	8 cut(s)	7, 62, 457, 580, 1086, 1215, 1270, 1930
BlnI	CCTAGG	1 cut(s)	1910
BlsI	GCNGC	8 cut(s)	8, 63, 458, 581, 1087, 1216, 1271, 1931
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	6 cut(s)	165, 343, 380, 381, 707, 1794
Bme18I	GGWCC	2 cut(s)	339, 798
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	3 cut(s)	339, 376, 798
BmiI	GGNNCC	4 cut(s)	340, 378, 385, 1176
BmrFI	CCNGG	6 cut(s)	165, 343, 380, 381, 707, 1794
BmsI	GCATC	4 cut(s)	922, 1298, 1552, 1714
BpiI	GAAGAC	1 cut(s)	1392
BplI	GAGNNNNNCTC	2 cut(s)	1094, 1126
BpmI	CTGGAG	1 cut(s)	1815
Bpu10I	CCTNAGC	2 cut(s)	507, 1251
BpuMI	CCSGG	2 cut(s)	380, 381
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	3 cut(s)	743, 1467, 1566
BsaHI	GRCGYC	1 cut(s)	629
BsaJI	CCNNGG	5 cut(s)	378, 379, 766, 1910, 1957
BsaWI	WCCGGW	2 cut(s)	28, 1177
BsaXI	ACNNNNNCTCC	8 cut(s)	50, 80, 1256, 1286, 1499, 1529, 1721, 1751
Bsc4I	CCNNNNNNNGG	5 cut(s)	1300, 1546, 1547, 1962, 1963
Bse1I	ACTGG	3 cut(s)	174, 676, 861
Bse3DI	GCAATG	2 cut(s)	1594, 1828
Bse8I	GATNNNNATC	3 cut(s)	743, 1467, 1566
BseBI	CCWGG	4 cut(s)	165, 343, 707, 1794
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	5 cut(s)	378, 379, 766, 1910, 1957
BseGI	GGATG	6 cut(s)	120, 865, 1267, 1289, 1435, 1967
BseJI	GATNNNNATC	3 cut(s)	743, 1467, 1566
BseLI	CCNNNNNNNGG	5 cut(s)	1300, 1546, 1547, 1962, 1963
BseMI	GCAATG	2 cut(s)	1594, 1828
BseMII	CTCAG	3 cut(s)	713, 1265, 1871
BseNI	ACTGG	3 cut(s)	174, 676, 861
BseRI	GAGGAG	1 cut(s)	1264
BseXI	GCAGC	5 cut(s)	48, 566, 1072, 1256, 1941
BseYI	CCCAGC	2 cut(s)	459, 1546
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	377
BshVI	ATCGAT	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	3 cut(s)	29, 380, 1178
BslFI	GGGAC	2 cut(s)	30, 533
BslI	CCNNNNNNNGG	5 cut(s)	1300, 1546, 1547, 1962, 1963
BsmAI	GTCTC	1 cut(s)	840
BsmBI	CGTCTC	1 cut(s)	840
BsmFI	GGGAC	2 cut(s)	30, 533
BsmI	GAATGC	4 cut(s)	968, 1589, 1771, 1823
BsnI	GGCC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
Bsp19I	CCATGG	1 cut(s)	1957
BspACI	CCGC	5 cut(s)	281, 456, 573, 678, 1214
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	714, 1264, 1870
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	283
BspHI	TCATGA	2 cut(s)	154, 469
BspLI	GGNNCC	4 cut(s)	340, 378, 385, 1176
BspMAI	CTGCAG	4 cut(s)	584, 1090, 1282, 1527
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	5 cut(s)	419, 776, 857, 1090, 1754
BspQI	GCTCTTC	1 cut(s)	843
BsrBI	CCGCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	1594, 1828
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	3 cut(s)	174, 676, 861
BssECI	CCNNGG	5 cut(s)	378, 379, 766, 1910, 1957
BssMI	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
BssNI	GRCGYC	1 cut(s)	629
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	3 cut(s)	766, 1910, 1957
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	4 cut(s)	165, 343, 707, 1794
Bst6I	CTCTTC	3 cut(s)	843, 1006, 1846
BstACI	GRCGYC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	773, 1317
BstDEI	CTNAG	4 cut(s)	507, 722, 1251, 1857
BstDSI	CCRYGG	1 cut(s)	1957
BstF5I	GGATG	6 cut(s)	120, 865, 1267, 1289, 1435, 1967
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	8 cut(s)	136, 414, 784, 865, 1098, 1762, 1804, 1849
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 312, 579, 1286
BstNI	CCWGG	4 cut(s)	165, 343, 707, 1794
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	6 cut(s)	163, 341, 378, 379, 705, 1792
BstSFI	CTRYAG	6 cut(s)	327, 580, 1086, 1278, 1523, 1680
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	5 cut(s)	48, 566, 1072, 1256, 1941
BstV2I	GAAGAC	1 cut(s)	1392
BstX2I	RGATCY	2 cut(s)	411, 1759
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	2 cut(s)	411, 1759
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	1957
BtsCI	GGATG	6 cut(s)	120, 865, 1267, 1289, 1435, 1967
BtsI	GCAGTG	1 cut(s)	1287
BtsIMutI	CAGTG	3 cut(s)	98, 651, 1287
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	773, 1317
CaiI	CAGNNNCTG	1 cut(s)	1258
CciI	TCATGA	2 cut(s)	154, 469
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	3 cut(s)	339, 376, 798
Cfr9I	CCCGGG	1 cut(s)	379
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	3 cut(s)	618, 727, 1475
Csp6I	GTAC	5 cut(s)	139, 268, 295, 309, 544
CviAII	CATG	7 cut(s)	112, 155, 470, 1359, 1426, 1657, 1958
CviQI	GTAC	5 cut(s)	139, 268, 295, 309, 544
DdeI	CTNAG	4 cut(s)	507, 722, 1251, 1857
DpnI	GATC	8 cut(s)	135, 413, 783, 864, 1097, 1761, 1803, 1848
DpnII	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
DraIII	CACNNNGTG	1 cut(s)	1361
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eam1104I	CTCTTC	3 cut(s)	843, 1006, 1846
EarI	CTCTTC	3 cut(s)	843, 1006, 1846
Eco130I	CCWWGG	3 cut(s)	766, 1910, 1957
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	339, 798
Eco57I	CTGAAG	2 cut(s)	711, 1478
Eco88I	CYCGRG	1 cut(s)	379
EcoO109I	RGGNCCY	2 cut(s)	339, 376
EcoRI	GAATTC	1 cut(s)	761
EcoRII	CCWGG	4 cut(s)	163, 341, 705, 1792
EcoT14I	CCWWGG	3 cut(s)	766, 1910, 1957
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	3 cut(s)	766, 1910, 1957
Esp3I	CGTCTC	1 cut(s)	840
FaeI	CATG	7 cut(s)	115, 158, 473, 1362, 1429, 1660, 1961
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 398, 430, 1464, 1496
FaqI	GGGAC	2 cut(s)	30, 533
FatI	CATG	7 cut(s)	111, 154, 469, 1358, 1425, 1656, 1957
FauNDI	CATATG	1 cut(s)	840
FbaI	TGATCA	1 cut(s)	1846
FblI	GTMKAC	1 cut(s)	1905
Fnu4HI	GCNGC	8 cut(s)	7, 62, 457, 580, 1086, 1215, 1270, 1930
FokI	GGATG	6 cut(s)	107, 872, 1274, 1276, 1442, 1974
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	8 cut(s)	7, 62, 457, 580, 1086, 1215, 1270, 1930
FspBI	CTAG	7 cut(s)	1049, 1100, 1295, 1382, 1689, 1697, 1911
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	8 cut(s)	7, 62, 457, 580, 1086, 1215, 1270, 1930
GsaI	CCCAGC	2 cut(s)	463, 1550
GsuI	CTGGAG	1 cut(s)	1815
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	3 cut(s)	29, 380, 1178
HgaI	GACGC	3 cut(s)	618, 727, 1475
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	629
Hin1II	CATG	7 cut(s)	115, 158, 473, 1362, 1429, 1660, 1961
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	1636
HindII	GTYRAC	1 cut(s)	1636
HpaII	CCGG	3 cut(s)	29, 380, 1178
HphI	GGTGA	5 cut(s)	921, 1052, 1118, 1347, 1521
Hpy166II	GTNNAC	5 cut(s)	177, 231, 1490, 1636, 1906
Hpy188III	TCNNGA	9 cut(s)	155, 415, 470, 866, 1259, 1382, 1472, 1559, 1697
Hpy8I	GTNNAC	5 cut(s)	177, 231, 1490, 1636, 1906
HpyAV	CCTTC	7 cut(s)	329, 340, 430, 803, 1141, 1163, 1893
HpyCH4IV	ACGT	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 312, 579, 1286
HpyF3I	CTNAG	4 cut(s)	507, 722, 1251, 1857
HpySE526I	ACGT	1 cut(s)	430
Hsp92I	GRCGYC	1 cut(s)	629
Hsp92II	CATG	7 cut(s)	115, 158, 473, 1362, 1429, 1660, 1961
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	1 cut(s)	1846
Kzo9I	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	5 cut(s)	58, 283, 320, 389, 1277
Lsp1109I	GCAGC	5 cut(s)	48, 566, 1072, 1256, 1941
LweI	GCATC	4 cut(s)	922, 1298, 1552, 1714
MaeI	CTAG	7 cut(s)	1049, 1100, 1295, 1382, 1689, 1697, 1911
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	6 cut(s)	68, 349, 927, 1106, 1451, 1527
MalI	GATC	8 cut(s)	135, 413, 783, 864, 1097, 1761, 1803, 1848
MbiI	CCGCTC	1 cut(s)	456
MboI	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
MflI	RGATCY	2 cut(s)	411, 1759
MhlI	GDGCHC	1 cut(s)	386
MlyI	GAGTC	6 cut(s)	95, 251, 992, 1103, 1739, 1855
MmeI	TCCRAC	3 cut(s)	342, 1787, 1902
MroXI	GAANNNNTTC	4 cut(s)	206, 761, 829, 1308
MseI	TTAA	2 cut(s)	645, 1608
MslI	CAYNNNNRTG	4 cut(s)	957, 1190, 1224, 1447
MspA1I	CMGCKG	1 cut(s)	610
MspI	CCGG	3 cut(s)	29, 380, 1178
MspR9I	CCNGG	6 cut(s)	165, 343, 380, 381, 707, 1794
Mva1269I	GAATGC	4 cut(s)	968, 1589, 1771, 1823
MvaI	CCWGG	4 cut(s)	165, 343, 707, 1794
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	4 cut(s)	157, 312, 579, 1286
NciI	CCSGG	2 cut(s)	380, 381
NcoI	CCATGG	1 cut(s)	1957
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
NlaIII	CATG	7 cut(s)	115, 158, 473, 1362, 1429, 1660, 1961
NlaIV	GGNNCC	4 cut(s)	340, 378, 385, 1176
NmuCI	GTSAC	6 cut(s)	68, 349, 927, 1106, 1451, 1527
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	1190
PagI	TCATGA	2 cut(s)	154, 469
PaqCI	CACCTGC	1 cut(s)	904
PciSI	GCTCTTC	1 cut(s)	843
PctI	GAATGC	4 cut(s)	968, 1589, 1771, 1823
PdmI	GAANNNNTTC	4 cut(s)	206, 761, 829, 1308
PfeI	GAWTC	8 cut(s)	39, 88, 739, 878, 1151, 1475, 1685, 1693
PfoI	TCCNGGA	1 cut(s)	341
PkrI	GCNGC	8 cut(s)	8, 63, 458, 581, 1087, 1216, 1271, 1931
PleI	GAGTC	6 cut(s)	95, 250, 992, 1103, 1738, 1855
PpsI	GAGTC	6 cut(s)	95, 250, 992, 1103, 1738, 1855
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
Psp6I	CCWGG	4 cut(s)	163, 341, 705, 1792
PspFI	CCCAGC	2 cut(s)	459, 1546
PspGI	CCWGG	4 cut(s)	163, 341, 705, 1792
PspN4I	GGNNCC	4 cut(s)	340, 378, 385, 1176
PspPI	GGNCC	3 cut(s)	339, 376, 798
PspPPI	RGGWCCY	1 cut(s)	339
PstI	CTGCAG	4 cut(s)	584, 1090, 1282, 1527
PstNI	CAGNNNCTG	1 cut(s)	1258
PsuI	RGATCY	2 cut(s)	411, 1759
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	5 cut(s)	140, 269, 296, 310, 545
RsaNI	GTAC	5 cut(s)	139, 268, 295, 309, 544
RseI	CAYNNNNRTG	4 cut(s)	957, 1190, 1224, 1447
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	2 cut(s)	645, 1608
SatI	GCNGC	8 cut(s)	7, 62, 457, 580, 1086, 1215, 1270, 1930
Sau3AI	GATC	8 cut(s)	133, 411, 781, 862, 1095, 1759, 1801, 1846
Sau96I	GGNCC	3 cut(s)	339, 376, 798
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	6 cut(s)	95, 251, 992, 1103, 1739, 1855
ScrFI	CCNGG	6 cut(s)	165, 343, 380, 381, 707, 1794
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	4 cut(s)	922, 1298, 1552, 1714
SfcI	CTRYAG	6 cut(s)	327, 580, 1086, 1278, 1523, 1680
SinI	GGWCC	2 cut(s)	339, 798
SmaI	CCCGGG	1 cut(s)	381
SmiMI	CAYNNNNRTG	4 cut(s)	957, 1190, 1224, 1447
SpeI	ACTAGT	1 cut(s)	1048
SsiI	CCGC	5 cut(s)	281, 456, 573, 678, 1214
SspI	AATATT	2 cut(s)	1024, 1813
SspMI	CTAG	7 cut(s)	1049, 1100, 1295, 1382, 1689, 1697, 1911
StyD4I	CCNGG	6 cut(s)	163, 341, 378, 379, 705, 1792
StyI	CCWWGG	3 cut(s)	766, 1910, 1957
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	132
TatI	WGTACW	3 cut(s)	138, 308, 543
TauI	GCSGC	2 cut(s)	459, 1217
TfiI	GAWTC	8 cut(s)	39, 88, 739, 878, 1151, 1475, 1685, 1693
Tru1I	TTAA	2 cut(s)	645, 1608
Tru9I	TTAA	2 cut(s)	645, 1608
TscAI	CASTG	3 cut(s)	98, 658, 1287
TseFI	GTSAC	6 cut(s)	68, 349, 927, 1106, 1451, 1527
TseI	GCWGC	6 cut(s)	6, 61, 579, 1085, 1269, 1929
Tsp45I	GTSAC	6 cut(s)	68, 349, 927, 1106, 1451, 1527
TspGWI	ACGGA	1 cut(s)	32
TspMI	CCCGGG	1 cut(s)	379
TspRI	CASTG	3 cut(s)	98, 658, 1287
VpaK11BI	GGWCC	2 cut(s)	339, 798
XapI	RAATTY	5 cut(s)	12, 622, 761, 1206, 1618
XbaI	TCTAGA	2 cut(s)	1381, 1696
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1723
XmaI	CCCGGG	1 cut(s)	379
XmaJI	CCTAGG	1 cut(s)	1910
XmiI	GTMKAC	1 cut(s)	1905
XmnI	GAANNNNTTC	4 cut(s)	206, 761, 829, 1308
XspI	CTAG	7 cut(s)	1049, 1100, 1295, 1382, 1689, 1697, 1911
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.