Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001811

Physical Location & Seq

Genomic Coordinates Reverse (-)

44543523 .. 44545392

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGCAGAGAGAACACGACGCCGCTTTCAGTGCCGACAGGCTACAGGTTCCATCCCACCGAAGAGGAGCTTGTGAACCACTATTTGAAGAAGAAGATTCATGGTGGAAATGATTCCGAAATCAACCAAATCATCCCTGAAATCGACCTCTGCAAATACGAGCCGGCTGAGCTCCCTGCTTTGTTGGGGACTGAAACAGAGGCTCATGACATGGAGTGGTTCTTCTTCACCAGAAAGACTTACAAGTACAACAAAAGCTCTCGCTCGAAGCGAACCACGAACAAGGGATACTGGAAAATCACAGGCCCGGAGCGTGGGATTAAAGCTCGACGATCCAAAGCTGTGATTGCGAAGAAGAGGACATTGACTTTTTACCAGGGTCGTGTGCCGACATCGAAGAAGACCAGCTGGGTCATTCATGAGTATTACCTTCCTGGAAATGGAGTTATTCCGTATCCGAAGCAGGCCCAGGGTGACTTTGTTATCTGTCGCTTGAAGATTAGATCAGATAGGAAGGATTCTTCGGTCAGTAATGAAGAAGAACCTGGTAGCGCGAGTCTGTCTGAAATGAATCAAGAGGGAAATGAGGAGTTGCTACTCCATCAACCTCAACCTCTGGATGACTGCTGCTCCTCAGCACTGCGGTCATCGGTGTCCCAAGAGCTGGAAGCTGTTCTGCAAACCAACGGCACTAATGATGATTGTAATGAGTTGCAATCACCATTTGGAGATAGTGAGTCCTGTGTTCAAGATGGGAATGAAGTTTCAACCTGTGATGAATGTGAGACTGTGTATGATGTGTTTCCACAGTTACGTGATCTGCCAGAACAAAATCTGGATTCACTCTTTGGTCCACATCAGCAACAGGAGTACTGCCCCTCTATACTACAGTCACCAATATACACAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

304

Amino Acids

34.57

Weight (kDa)

5.32

Isoelectric Point (pI)

65.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 143	2.9e-38	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55410 AT3G55410 AT5G65750
fragaria_vesca	FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21770 FvH4_7g21851
malus_domestica	MD01G1122800.v1.1 MD02G1281300.v1.1 MD02G1281500.v1.1 MD07G1192300.v1.1
prunus_persica	Prupe.2G230300_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1 Prupe.2G230400_v2.0.a1
pyrus_communis	pycom01g14980 pycom02g24050 pycom07g18180
rosa_chinensis	RchiOBHm_Chr1g0365921 RchiOBHm_Chr1g0366031
rosa_laevigata	RLG00000027377 RLG00000027378
rosa_multiflora	Rmu_co8265029.1_g000001 Rmu_sc0004288.1_g000005 Rmu_sc0006406.1_g000008
rosa_roxburghii	Rroxscaffold_4G00290620 Rroxscaffold_4G00290640
rosa_rugosa	Rorug01G0325800 Rorug01G0325900 Rorug01G0326000 Rorug01G0326100 Rorug01G0326200 Rorug01G0326300 Rorug01G0326400
rosa_samantha	Rh1AG334500 Rh1AG334600 Rh1BG295400 Rh1BG295600 Rh1CG312100 Rh1CG312200 Rh1DG327700 Rh1DG328000
rosa_wichuraiana	Rw1G029690 Rw1G029720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	664
AccII	CGCG	1 cut(s)	554
AciI	CCGC	2 cut(s)	23, 643
AclWI	GGATC	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	248, 872
AfiI	CCNNNNNNNGG	3 cut(s)	314, 440, 664
AgsI	TTSAA	4 cut(s)	88, 496, 749, 768
AjnI	CCWGG	4 cut(s)	375, 433, 468, 544
AluBI	AGCT	9 cut(s)	70, 172, 258, 326, 341, 408, 664, 671, 910
AluI	AGCT	9 cut(s)	70, 172, 258, 326, 341, 408, 664, 671, 910
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	2 cut(s)	304, 465
ApeKI	GCWGC	1 cut(s)	627
Asp700I	GAANNNNTTC	2 cut(s)	112, 672
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	3 cut(s)	305, 466, 851
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	220, 485, 711, 885
AvaII	GGWCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	3 cut(s)	60, 609, 746
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	4 cut(s)	377, 435, 470, 546
BciVI	GTATCC	2 cut(s)	281, 465
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	779
BfmI	CTRYAG	2 cut(s)	43, 887
BfuI	GTATCC	2 cut(s)	281, 465
BisI	GCNGC	2 cut(s)	23, 628
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	2 cut(s)	24, 629
BmcAI	AGTACT	1 cut(s)	872
Bme1390I	CCNGG	5 cut(s)	308, 377, 435, 470, 546
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	3 cut(s)	305, 466, 851
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	5 cut(s)	308, 377, 435, 470, 546
BpiI	GAAGAC	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	815
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	376, 468, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 440, 664
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	296
BseBI	CCWGG	4 cut(s)	377, 435, 470, 546
BseDI	CCNNGG	3 cut(s)	376, 468, 469
BseGI	GGATG	3 cut(s)	52, 132, 625
BseLI	CCNNNNNNNGG	3 cut(s)	314, 440, 664
BseMII	CTCAG	2 cut(s)	159, 648
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	3 cut(s)	80, 602, 622
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	2 cut(s)	306, 467
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	164, 308
BslFI	GGGAC	2 cut(s)	202, 640
BslI	CCNNNNNNNGG	3 cut(s)	314, 440, 664
BsmAI	GTCTC	1 cut(s)	779
BsmFI	GGGAC	2 cut(s)	202, 640
BsnI	GGCC	2 cut(s)	306, 467
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	332, 503, 817
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	23, 643
BspANI	GGCC	2 cut(s)	306, 467
BspCNI	CTCAG	2 cut(s)	160, 647
BspFNI	CGCG	1 cut(s)	554
BspHI	TCATGA	2 cut(s)	205, 418
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	376, 468, 469
BssMI	GATC	3 cut(s)	332, 503, 817
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	4 cut(s)	377, 435, 470, 546
Bst4CI	ACNGT	3 cut(s)	790, 810, 891
Bst6I	CTCTTC	2 cut(s)	57, 350
BstACI	GRCGYC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	2 cut(s)	165, 465
BstDEI	CTNAG	2 cut(s)	168, 634
BstF5I	GGATG	3 cut(s)	52, 132, 625
BstFNI	CGCG	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	3 cut(s)	335, 506, 820
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	3 cut(s)	332, 503, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 169, 347
BstNI	CCWGG	4 cut(s)	377, 435, 470, 546
BstSCI	CCNGG	5 cut(s)	306, 375, 433, 468, 544
BstSFI	CTRYAG	2 cut(s)	43, 887
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	407
BsuI	GTATCC	2 cut(s)	281, 465
BsuRI	GGCC	2 cut(s)	306, 467
BtsCI	GGATG	3 cut(s)	52, 132, 625
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	2 cut(s)	36, 638
Cac8I	GCNNGC	2 cut(s)	165, 465
CciI	TCATGA	2 cut(s)	205, 418
CfoI	GCGC	1 cut(s)	554
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	305, 466, 851
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	2 cut(s)	247, 871
CviAII	CATG	4 cut(s)	101, 206, 211, 419
CviQI	GTAC	2 cut(s)	247, 871
DdeI	CTNAG	2 cut(s)	168, 634
DpnI	GATC	3 cut(s)	334, 505, 819
DpnII	GATC	3 cut(s)	332, 503, 817
Eam1104I	CTCTTC	2 cut(s)	57, 350
EarI	CTCTTC	2 cut(s)	57, 350
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	4 cut(s)	375, 433, 468, 544
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	4 cut(s)	104, 209, 214, 422
FaiI	YATR	7 cut(s)	102, 207, 212, 420, 795, 884, 901
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	2 cut(s)	202, 640
FatI	CATG	4 cut(s)	100, 205, 210, 418
Fnu4HI	GCNGC	2 cut(s)	23, 628
FokI	GGATG	3 cut(s)	39, 119, 632
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	23, 628
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	2 cut(s)	23, 628
GsaI	CCCAGC	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	306, 467
HapII	CCGG	2 cut(s)	164, 308
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	104, 209, 214, 422
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	7 cut(s)	97, 113, 518, 556, 571, 737, 839
HpaII	CCGG	2 cut(s)	164, 308
HphI	GGTGA	4 cut(s)	220, 485, 711, 885
Hpy166II	GTNNAC	2 cut(s)	76, 854
Hpy188I	TCNGA	4 cut(s)	118, 459, 508, 565
Hpy188III	TCNNGA	6 cut(s)	206, 419, 575, 617, 749, 836
Hpy8I	GTNNAC	2 cut(s)	76, 854
Hpy99I	CGWCG	2 cut(s)	22, 333
HpyAV	CCTTC	2 cut(s)	440, 508
HpyCH4III	ACNGT	3 cut(s)	790, 810, 891
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	3 cut(s)	153, 679, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 169, 347
HpyF3I	CTNAG	2 cut(s)	168, 634
HpySE526I	ACGT	1 cut(s)	814
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	104, 209, 214, 422
HspAI	GCGC	1 cut(s)	552
KroI	GCCGGC	1 cut(s)	163
KroNI	GCCGGC	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	332, 503, 817
LmnI	GCTCC	4 cut(s)	67, 177, 310, 635
Lsp1109I	GCAGC	1 cut(s)	614
MabI	ACCWGGT	1 cut(s)	544
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	3 cut(s)	473, 810, 891
MalI	GATC	3 cut(s)	334, 505, 819
MboI	GATC	3 cut(s)	332, 503, 817
MhlI	GDGCHC	1 cut(s)	174
MlyI	GAGTC	2 cut(s)	565, 746
MroNI	GCCGGC	1 cut(s)	163
MroXI	GAANNNNTTC	2 cut(s)	112, 672
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	2 cut(s)	164, 308
MspR9I	CCNGG	5 cut(s)	308, 377, 435, 470, 546
MvaI	CCWGG	4 cut(s)	377, 435, 470, 546
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	3 cut(s)	31, 169, 347
NaeI	GCCGGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	332, 503, 817
NgoMIV	GCCGGC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	104, 209, 214, 422
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	473, 891
PagI	TCATGA	2 cut(s)	205, 418
PasI	CCCWGGG	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PdiI	GCCGGC	1 cut(s)	165
PdmI	GAANNNNTTC	2 cut(s)	112, 672
PfeI	GAWTC	5 cut(s)	97, 113, 518, 571, 839
PflMI	CCANNNNNTGG	1 cut(s)	664
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	24, 629
PleI	GAGTC	2 cut(s)	564, 745
PpsI	GAGTC	2 cut(s)	564, 745
Ppu21I	YACGTR	1 cut(s)	815
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	4 cut(s)	375, 433, 468, 544
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	4 cut(s)	375, 433, 468, 544
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	3 cut(s)	305, 466, 851
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	2 cut(s)	248, 872
RsaNI	GTAC	2 cut(s)	247, 871
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	2 cut(s)	23, 628
Sau3AI	GATC	3 cut(s)	332, 503, 817
Sau96I	GGNCC	3 cut(s)	305, 466, 851
ScaI	AGTACT	1 cut(s)	872
SchI	GAGTC	2 cut(s)	565, 746
ScrFI	CCNGG	5 cut(s)	308, 377, 435, 470, 546
SduI	GDGCHC	1 cut(s)	174
SexAI	ACCWGGT	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	43, 887
SinI	GGWCC	1 cut(s)	851
SsiI	CCGC	2 cut(s)	23, 643
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	5 cut(s)	306, 375, 433, 468, 544
TaaI	ACNGT	3 cut(s)	790, 810, 891
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	4 cut(s)	144, 266, 328, 395
TaqII	GACCGA	1 cut(s)	514
TatI	WGTACW	2 cut(s)	246, 870
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	5 cut(s)	97, 113, 518, 571, 839
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	36, 645
TseFI	GTSAC	2 cut(s)	473, 891
TseI	GCWGC	1 cut(s)	627
Tsp45I	GTSAC	2 cut(s)	473, 891
TspDTI	ATGAA	6 cut(s)	89, 407, 549, 584, 774, 792
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	36, 645
Van91I	CCANNNNNTGG	1 cut(s)	664
VpaK11BI	GGWCC	1 cut(s)	851
XmnI	GAANNNNTTC	2 cut(s)	112, 672
ZrmI	AGTACT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.