Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

21310825 .. 21312378

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCACCGTCACATCCAATGCTTCACCTAAATCCTTCTCCTTCACTGTTTCCAATCCTTTCAAAACCCTAATCCCCAACAAATCACCATCTCTCTGTTATCCAACTCGCAACAAGAACCATCACCGTCTAGGTTTCTCGATAAAAGCCACCGTATCAACACCACCTTCAATCGCAACCGGAAATGCACCTTCACCGGATTACAGAGTCGAGATTCTCTCCGAATCTCTACCATTTATCCAAAAATTCCGAGGTAAAACCATAGTTGTCAAATACGGCGGCGCAGCAATGACTTCGCCGGAACTTAAATCCTCCGTCGTAAGCGATCTCGTGCTCCTCGCGTGTGTCGGTCTTCGTCCGATCCTCGTTCACGGTGGTGGTCCTGACATCAACCGTTACCTGAAACAACTCAACATCCCAGCTGAGTTTCGTGACGGACTACGTGTCACCGACGCAACGACGATGGAGATCGTCTCTATGGTTTTAGTCGGAAAGGTCAATAAGAATCTGGTTTCTCTTATTAACGCCGCCGGAGCCACCGCTGTGGGGTTATCAGGACACGACGGTCGTCTTCTCACAGCACGACCTGTTCCCAATTCAGCTCAGTTAGGTTTCGTTGGTGAAGTTGCAAGAGTTGATCCATCTGTGTTACGTCCGCTCGTTGATTATGGTTACATTCCAGTGATTGCCTCTGTTGCTGCTGATGATTCTGGTCAAGCTTACAATATCAATGCAGATACAGTTGCTGGAGAGCTTGCGGCCGCGCTTGGAGCTGAGAAACTGATTCTGCTGACTGATGTGGCTGGAATCTTGGAGAATAAAGAGGATCCAAGTAGTTTGATAAAGGAGATTGATATAAAAGGAGTGAAGAAGATGATTGAAGATGGGAAAGTTGCTGGTGGGATGATTCCTAAAGTGAAGTGTTGTATAAGGTCTCTAGCTCAAGGAGTTAAGACTGCTAGTATTATTGATGGAAGGAGACAACATTCTTTGCTTCATGAGATTATGTCTGATGAAGGAGCTGGAACTATGATTACTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

347

Amino Acids

36.59

Weight (kDa)

9.04

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	86 - 324	4e-48	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	564
AccBSI	CCGCTC	1 cut(s)	658
AccII	CGCG	2 cut(s)	341, 764
AciI	CCGC	6 cut(s)	279, 528, 540, 656, 758, 762
AclWI	GGATC	4 cut(s)	355, 632, 821, 834
AcoI	YGGCCR	2 cut(s)	3, 759
AcsI	RAATTY	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	546
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	64, 171, 881
AhdI	GACNNNNNGTC	1 cut(s)	443
AleI	CACNNNNGTG	2 cut(s)	375, 542
AluBI	AGCT	7 cut(s)	422, 602, 719, 754, 773, 941, 1022
AluI	AGCT	7 cut(s)	422, 602, 719, 754, 773, 941, 1022
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	3 cut(s)	478, 939, 973
AlwI	GGATC	4 cut(s)	355, 632, 821, 834
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	2 cut(s)	3, 759
ApeKI	GCWGC	2 cut(s)	284, 698
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	284, 766
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	6 cut(s)	18, 78, 116, 186, 439, 632
AvaII	GGWCC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	826
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	344, 563
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	296, 685
BccI	CCATC	6 cut(s)	97, 129, 457, 649, 878, 965
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BcoDI	GTCTC	3 cut(s)	478, 939, 973
BfaI	CTAG	3 cut(s)	131, 938, 960
BisI	GCNGC	6 cut(s)	280, 285, 528, 699, 759, 762
BlsI	GCNGC	6 cut(s)	281, 286, 529, 700, 760, 763
Bme18I	GGWCC	1 cut(s)	380
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	535, 828
BoxI	GACNNNNGTC	1 cut(s)	567
BpiI	GAAGAC	2 cut(s)	344, 563
BplI	GAGNNNNNCTC	4 cut(s)	203, 235, 458, 490
BpmI	CTGGAG	1 cut(s)	768
BpuEI	CTTGAG	1 cut(s)	927
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	2 cut(s)	179, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	2 cut(s)	680, 1042
Bse3DI	GCAATG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	3 cut(s)	14, 414, 909
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	414, 617, 765
BseNI	ACTGG	2 cut(s)	680, 1042
BseRI	GAGGAG	1 cut(s)	326
BseX3I	CGGCCG	1 cut(s)	759
BseXI	GCAGC	2 cut(s)	296, 685
BseYI	CCCAGC	1 cut(s)	418
Bsh1236I	CGCG	2 cut(s)	341, 764
Bsh1285I	CGRYCG	2 cut(s)	568, 762
BshFI	GGCC	2 cut(s)	5, 761
BsiEI	CGRYCG	2 cut(s)	568, 762
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	180, 197, 299, 531
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	3 cut(s)	478, 939, 973
BsmBI	CGTCTC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	5, 761
Bso31I	GGTCTC	1 cut(s)	939
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	325, 360, 468, 637, 826
BspACI	CCGC	6 cut(s)	279, 528, 540, 656, 758, 762
BspANI	GGCC	2 cut(s)	5, 761
BspCNI	CTCAG	3 cut(s)	415, 616, 766
BspFNI	CGCG	2 cut(s)	341, 764
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	2 cut(s)	535, 828
BspPI	GGATC	4 cut(s)	355, 632, 821, 834
BspTNI	GGTCTC	1 cut(s)	939
BsrBI	CCGCTC	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	680, 1042
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	5 cut(s)	325, 360, 468, 637, 826
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst4CI	ACNGT	8 cut(s)	10, 49, 128, 154, 374, 395, 566, 742
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	3 cut(s)	423, 603, 774
BstF5I	GGATG	3 cut(s)	14, 414, 909
BstFNI	CGCG	2 cut(s)	341, 764
BstHHI	GCGC	2 cut(s)	284, 766
BstKTI	GATC	5 cut(s)	328, 363, 471, 640, 829
BstMAI	GTCTC	3 cut(s)	478, 939, 973
BstMBI	GATC	5 cut(s)	325, 360, 468, 637, 826
BstMCI	CGRYCG	2 cut(s)	568, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 695, 770
BstPAI	GACNNNNGTC	1 cut(s)	567
BstUI	CGCG	2 cut(s)	341, 764
BstV1I	GCAGC	2 cut(s)	296, 685
BstV2I	GAAGAC	2 cut(s)	344, 563
BstX2I	RGATCY	1 cut(s)	826
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	826
BstZI	CGGCCG	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	5, 761
BtsCI	GGATG	3 cut(s)	14, 414, 909
BtsIMutI	CAGTG	2 cut(s)	45, 687
Cac8I	GCNNGC	1 cut(s)	756
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	1 cut(s)	997
CciNI	GCGGCCGC	1 cut(s)	759
CfoI	GCGC	2 cut(s)	284, 766
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	461
CviAII	CATG	1 cut(s)	998
DdeI	CTNAG	3 cut(s)	423, 603, 774
DpnI	GATC	5 cut(s)	327, 362, 470, 639, 828
DpnII	GATC	5 cut(s)	325, 360, 468, 637, 826
DrdI	GACNNNNNNGTC	1 cut(s)	564
DriI	GACNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	564
EaeI	YGGCCR	2 cut(s)	3, 759
EagI	CGGCCG	1 cut(s)	759
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EclXI	CGGCCG	1 cut(s)	759
Eco31I	GGTCTC	1 cut(s)	939
Eco47I	GGWCC	1 cut(s)	380
Eco52I	CGGCCG	1 cut(s)	759
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	1 cut(s)	1001
FaiI	YATR	8 cut(s)	263, 479, 669, 857, 929, 999, 1007, 1031
FatI	CATG	1 cut(s)	997
Fnu4HI	GCNGC	6 cut(s)	280, 285, 528, 699, 759, 762
FokI	GGATG	2 cut(s)	401, 916
Fsp4HI	GCNGC	6 cut(s)	280, 285, 528, 699, 759, 762
FspBI	CTAG	3 cut(s)	131, 938, 960
GlaI	GCGC	2 cut(s)	283, 765
GluI	GCNGC	6 cut(s)	280, 285, 528, 699, 759, 762
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	2 cut(s)	5, 761
HapII	CCGG	4 cut(s)	180, 197, 299, 531
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	2 cut(s)	284, 766
Hin1II	CATG	1 cut(s)	1001
Hin6I	GCGC	2 cut(s)	282, 764
HinP1I	GCGC	2 cut(s)	282, 764
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	8 cut(s)	207, 214, 224, 505, 707, 784, 807, 907
HpaII	CCGG	4 cut(s)	180, 197, 299, 531
HphI	GGTGA	6 cut(s)	18, 78, 116, 186, 439, 632
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	5 cut(s)	223, 251, 360, 491, 1012
Hpy188III	TCNNGA	6 cut(s)	139, 211, 383, 431, 555, 998
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	4 cut(s)	320, 455, 463, 566
HpyAV	CCTTC	6 cut(s)	46, 52, 177, 201, 969, 1010
HpyCH4III	ACNGT	8 cut(s)	10, 49, 128, 154, 374, 395, 566, 742
HpyCH4IV	ACGT	2 cut(s)	442, 652
HpyCH4V	TGCA	3 cut(s)	188, 629, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 695, 770
HpyF3I	CTNAG	3 cut(s)	423, 603, 774
HpySE526I	ACGT	2 cut(s)	442, 652
Hsp92II	CATG	1 cut(s)	1001
HspAI	GCGC	2 cut(s)	282, 764
Kzo9I	GATC	5 cut(s)	325, 360, 468, 637, 826
LmnI	GCTCC	4 cut(s)	339, 533, 770, 1019
Lsp1109I	GCAGC	2 cut(s)	296, 685
MaeI	CTAG	3 cut(s)	131, 938, 960
MaeII	ACGT	2 cut(s)	442, 652
MaeIII	GTNAC	6 cut(s)	10, 395, 431, 445, 648, 671
MalI	GATC	5 cut(s)	327, 362, 470, 639, 828
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	5 cut(s)	325, 360, 468, 637, 826
MboII	GAAGA	5 cut(s)	344, 563, 880, 883, 893
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	245, 595
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	2 cut(s)	128, 469
MnlI	CCTC	6 cut(s)	245, 322, 347, 374, 700, 817
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	306, 522, 951
MslI	CAYNNNNRTG	3 cut(s)	375, 542, 680
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	422, 542
MspI	CCGG	4 cut(s)	180, 197, 299, 531
MvnI	CGCG	2 cut(s)	341, 764
MwoI	GCNNNNNNNGC	3 cut(s)	533, 695, 770
NdeII	GATC	5 cut(s)	325, 360, 468, 637, 826
NlaIII	CATG	1 cut(s)	1001
NlaIV	GGNNCC	2 cut(s)	535, 828
NmuCI	GTSAC	3 cut(s)	10, 431, 445
NotI	GCGGCCGC	1 cut(s)	759
OliI	CACNNNNGTG	2 cut(s)	375, 542
PagI	TCATGA	1 cut(s)	997
PfeI	GAWTC	7 cut(s)	214, 224, 505, 707, 784, 807, 907
PkrI	GCNGC	6 cut(s)	281, 286, 529, 700, 760, 763
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	535, 828
PspPI	GGNCC	1 cut(s)	380
PsrI	GAACNNNNNNTAC	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	1 cut(s)	422
RseI	CAYNNNNRTG	3 cut(s)	375, 542, 680
SaqAI	TTAA	3 cut(s)	306, 522, 951
SatI	GCNGC	6 cut(s)	280, 285, 528, 699, 759, 762
Sau3AI	GATC	5 cut(s)	325, 360, 468, 637, 826
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	336
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	3 cut(s)	375, 542, 680
SmlI	CTYRAG	1 cut(s)	942
SmoI	CTYRAG	1 cut(s)	942
Sse9I	AATT	2 cut(s)	245, 595
SsiI	CCGC	6 cut(s)	279, 528, 540, 656, 758, 762
SspMI	CTAG	3 cut(s)	131, 938, 960
TaaI	ACNGT	8 cut(s)	10, 49, 128, 154, 374, 395, 566, 742
TaiI	ACGT	2 cut(s)	445, 655
TaqI	TCGA	2 cut(s)	140, 210
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	245, 595
TauI	GCSGC	4 cut(s)	282, 530, 761, 764
TfiI	GAWTC	7 cut(s)	214, 224, 505, 707, 784, 807, 907
Tru1I	TTAA	3 cut(s)	306, 522, 951
Tru9I	TTAA	3 cut(s)	306, 522, 951
TscAI	CASTG	2 cut(s)	52, 687
TseFI	GTSAC	3 cut(s)	10, 431, 445
TseI	GCWGC	2 cut(s)	284, 698
Tsp45I	GTSAC	3 cut(s)	10, 431, 445
TspDTI	ATGAA	2 cut(s)	986, 1029
TspGWI	ACGGA	2 cut(s)	304, 450
TspRI	CASTG	2 cut(s)	52, 687
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	3 cut(s)	131, 938, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.