Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

13047295 .. 13047660

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG157800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACACCCCGCAACCTCCCCAACACCCTCACCTTCTTCCGCCCCAAATGTCCACCGCACTCGCACTCACTCTCAATCAAAGCCCAACACCCGGCTCATACCACTCCAGGTCAGCTCCGGGTCGACATTCTCTCCGAATCCCTACCCTTCATCCATAAATTTCGAGGCAAAACCATCGTTGTCAAGTACGGCGGCGCCGCCATGAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCTTCGGCCTTCGCCCCATCTTAGTCCACGGCGGCAGCCCCGAGATCAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

121

Amino Acids

13.21

Weight (kDa)

9.85

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 120	1.4e-06	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	6 cut(s)	64, 94, 110, 246, 252, 342
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	145
AjnI	CCWGG	2 cut(s)	160, 273
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	260, 285
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	276, 316
ApeKI	GCWGC	1 cut(s)	345
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	251
AsuC2I	CCSGG	2 cut(s)	146, 173
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	37, 236, 335
BceAI	ACGGC	2 cut(s)	259, 355
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	162, 275
BcnI	CCSGG	2 cut(s)	146, 173
BcoDI	GTCTC	2 cut(s)	260, 285
BfaI	CTAG	1 cut(s)	364
BfoI	RGCGCY	1 cut(s)	252
BisI	GCNGC	4 cut(s)	247, 252, 343, 346
BlsI	GCNGC	4 cut(s)	248, 253, 344, 347
Bme1390I	CCNGG	4 cut(s)	146, 162, 173, 275
BmeT110I	CYCGRG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	4 cut(s)	146, 162, 173, 275
BpmI	CTGGAG	2 cut(s)	144, 257
BpuMI	CCSGG	2 cut(s)	146, 173
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	2 cut(s)	260, 285
BsaJI	CCNNGG	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	162, 275
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	357
BshFI	GGCC	2 cut(s)	278, 318
BshNI	GGYRCC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	146, 172
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	260, 285
BsnI	GGCC	2 cut(s)	278, 318
Bso31I	GGTCTC	2 cut(s)	260, 285
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	36, 354
BspACI	CCGC	6 cut(s)	64, 94, 110, 246, 252, 342
BspANI	GGCC	2 cut(s)	278, 318
BspLI	GGNNCC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	2 cut(s)	260, 285
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	36, 354
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	162, 275
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	1 cut(s)	331
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	39, 357
BstMAI	GTCTC	2 cut(s)	260, 285
BstMBI	GATC	2 cut(s)	36, 354
BstNI	CCWGG	2 cut(s)	162, 275
BstSCI	CCNGG	4 cut(s)	144, 160, 171, 273
BstV1I	GCAGC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	278, 318
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	7 cut(s)	8, 137, 149, 169, 278, 318, 348
CviKI_1	RGCY	7 cut(s)	8, 137, 149, 169, 278, 318, 348
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	331
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	2 cut(s)	38, 356
DpnII	GATC	2 cut(s)	36, 354
EciI	GGCGGA	1 cut(s)	83
Eco31I	GGTCTC	2 cut(s)	260, 285
Eco88I	CYCGRG	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	160, 273
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	153, 210, 257
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	71
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	247, 252, 343, 346
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	247, 252, 343, 346
FspBI	CTAG	1 cut(s)	364
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	4 cut(s)	247, 252, 343, 346
GsuI	CTGGAG	2 cut(s)	144, 257
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	278, 318
HapII	CCGG	2 cut(s)	146, 172
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	2 cut(s)	146, 172
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	107, 178, 337
Hpy188I	TCNGA	3 cut(s)	36, 190, 290
Hpy8I	GTNNAC	3 cut(s)	107, 178, 337
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	5 cut(s)	60, 97, 211, 253, 329
HpyCH4III	ACNGT	1 cut(s)	283
HpyF3I	CTNAG	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	249
KasI	GGCGCC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	36, 354
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	7 cut(s)	147, 159, 174, 185, 260, 287, 322
Lsp1109I	GCAGC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	364
MalI	GATC	2 cut(s)	38, 356
MboI	GATC	2 cut(s)	36, 354
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	1 cut(s)	212
Mly113I	GGCGCC	1 cut(s)	249
MnlI	CCTC	8 cut(s)	57, 80, 92, 212, 281, 305, 311, 314
MspI	CCGG	2 cut(s)	146, 172
MspR9I	CCNGG	4 cut(s)	146, 162, 173, 275
MvaI	CCWGG	2 cut(s)	162, 275
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	146, 173
NdeII	GATC	2 cut(s)	36, 354
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	248, 253, 344, 347
PluTI	GGCGCC	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	160, 273
PspGI	CCWGG	2 cut(s)	160, 273
PspN4I	GGNNCC	1 cut(s)	250
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	4 cut(s)	247, 252, 343, 346
Sau3AI	GATC	2 cut(s)	36, 354
ScrFI	CCNGG	4 cut(s)	146, 162, 173, 275
SetI	ASST	6 cut(s)	72, 89, 166, 171, 297, 363
SfoI	GGCGCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	6 cut(s)	64, 94, 110, 246, 252, 342
SspDI	GGCGCC	1 cut(s)	248
SspMI	CTAG	1 cut(s)	364
StyD4I	CCNGG	4 cut(s)	144, 160, 171, 273
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	177, 217
TasI	AATT	1 cut(s)	212
TauI	GCSGC	3 cut(s)	249, 254, 345
TfiI	GAWTC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	345
TspDTI	ATGAA	2 cut(s)	193, 272
Tth111I	GACNNNGTC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.