Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

7306251 .. 7306490

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGATCGTCTCCATGGTCTTGGCCGGTAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGAGAAGGAGTCAAGGCTATCGACCTCTGCGGCTTCGACGGCGAGCTCATCACCGCCCGCCCCGCCCCCAACGCAGCCAAGTTAGGGTTTGTCGGCGAGGTGGCGCGCGTGGACCCCGCAATTCTCCGGTCGATCGTGGACGACGGTCACATTCCGGTGATTGCGTCGGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

79

Amino Acids

8.4

Weight (kDa)

5.53

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	1 - 76	8.8e-07	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	5 cut(s)	93, 117, 121, 126, 180
AcoI	YGGCCR	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	16, 55
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	169, 171
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	106, 232
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	16, 55
BisI	GCNGC	2 cut(s)	94, 138
BlsI	GCNGC	2 cut(s)	95, 139
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	177
BoxI	GACNNNNGTC	1 cut(s)	207
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	189, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	147
BsePI	GCGCGC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	169, 171
Bsh1285I	CGRYCG	2 cut(s)	194, 198
BshFI	GGCC	1 cut(s)	26
BsiEI	CGRYCG	2 cut(s)	194, 198
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	27, 190, 218
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	2 cut(s)	16, 55
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 57, 195
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	5 cut(s)	93, 117, 121, 126, 180
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	2 cut(s)	169, 171
BspLI	GGNNCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	15
BssHII	GCGCGC	1 cut(s)	167
BssMI	GATC	3 cut(s)	6, 57, 195
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	107, 121, 169
BstDSI	CCRYGG	1 cut(s)	15
BstFNI	CGCG	2 cut(s)	169, 171
BstHHI	GCGC	2 cut(s)	169, 171
BstKTI	GATC	3 cut(s)	9, 60, 198
BstMAI	GTCTC	2 cut(s)	16, 55
BstMBI	GATC	3 cut(s)	6, 57, 195
BstMCI	CGRYCG	2 cut(s)	194, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 125, 134
BstPAI	GACNNNNGTC	1 cut(s)	207
BstUI	CGCG	2 cut(s)	169, 171
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	107, 121, 169
CfoI	GCGC	2 cut(s)	169, 171
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	216
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	5 cut(s)	26, 80, 96, 109, 140
CviKI_1	RGCY	5 cut(s)	26, 80, 96, 109, 140
DpnI	GATC	3 cut(s)	8, 59, 197
DpnII	GATC	3 cut(s)	6, 57, 195
EaeI	YGGCCR	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
FauI	CCCGC	3 cut(s)	128, 133, 187
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	94, 138
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	94, 138
GlaI	GCGC	2 cut(s)	168, 170
GluI	GCNGC	2 cut(s)	94, 138
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	3 cut(s)	27, 190, 218
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	169, 171
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	2 cut(s)	167, 169
HinP1I	GCGC	2 cut(s)	167, 169
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	3 cut(s)	27, 190, 218
HphI	GGTGA	2 cut(s)	106, 232
Hpy166II	GTNNAC	3 cut(s)	37, 175, 202
Hpy188I	TCNGA	1 cut(s)	232
Hpy8I	GTNNAC	3 cut(s)	37, 175, 202
Hpy99I	CGWCG	3 cut(s)	104, 209, 232
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 125, 134
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	2 cut(s)	167, 169
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 57, 195
LpnPI	CCDG	3 cut(s)	40, 203, 231
Lsp1109I	GCAGC	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	8, 59, 197
MboI	GATC	3 cut(s)	6, 57, 195
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	98, 154
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	3 cut(s)	27, 190, 218
MvnI	CGCG	2 cut(s)	169, 171
MwoI	GCNNNNNNNGC	3 cut(s)	102, 125, 134
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	6, 57, 195
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	209
PauI	GCGCGC	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	95, 139
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PshAI	GACNNNNGTC	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	175
PteI	GCGCGC	1 cut(s)	167
PvuI	CGATCG	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	94, 138
Sau3AI	GATC	3 cut(s)	6, 57, 195
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	3 cut(s)	90, 111, 165
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	5 cut(s)	93, 117, 121, 126, 180
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	84, 99, 194
TasI	AATT	1 cut(s)	183
TauI	GCSGC	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.