Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

35323797 .. 35324506

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG318300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAAAGACGAGACCCTCCAGGCCACCGTCATCAGAGACCTCGTCCTCCTCGCTTGCGTCGGCCTCCGCCCCATTTTGGTCCACGGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACCATGGAGATCATCTCCATGGTCTTGGCCGGCAAAGTCAGCAAGCATTTGGTCTCCTTGATCAACCGGAAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCGACGGCGAGCTCATCACCTCCCGCCCCGCCCCCAACGCTGCCAAGTTAAGAAAATGGAATGAGGAGCACAGGGAGAAGGGAGAAGATGTTTATGATGATAACATTTTTGAAGATTTGGTAAGGAGATTTGAGAAACCAGATAGAAGAAATCGGTGGGATTCCCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTGTAGGATCTTCTGCTGCCATTCTAGATTCGATTTCGTATCTGACAAAGAAGGTGGACTTCGGAGAGGCTACGGCGGCTCACGGCGACCTGGCTTGGAGGAATGGCAGCTACGGGTTGTCTAGGCTTCTAGGCAGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

202

Amino Acids

22.58

Weight (kDa)

7.82

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	8 - 111	1.2e-12	Amino acid kinase family
KTI12	PF08433	104 - 152	2.3e-12	Chromatin associated protein KTI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	7 cut(s)	67, 87, 90, 267, 295, 300, 542
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	2 cut(s)	198, 452
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	18, 555
AluBI	AGCT	2 cut(s)	283, 576
AluI	AGCT	2 cut(s)	283, 576
Alw21I	GWGCWC	2 cut(s)	285, 342
Alw26I	GTCTC	3 cut(s)	5, 30, 229
AlwI	GGATC	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	8 cut(s)	21, 61, 91, 148, 198, 252, 259, 452
ApeKI	GCWGC	3 cut(s)	311, 482, 573
AspLEI	GCGC	2 cut(s)	120, 169
AspS9I	GGNCC	2 cut(s)	79, 92
AsuHPI	GGTGA	2 cut(s)	151, 280
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	285, 342
BbvI	GCAGC	3 cut(s)	298, 469, 585
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	5 cut(s)	100, 163, 292, 555, 565
BciT130I	CCWGG	2 cut(s)	20, 557
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	5, 30, 229
BfaI	CTAG	3 cut(s)	491, 588, 596
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
BlsI	GCNGC	7 cut(s)	89, 92, 269, 313, 484, 544, 575
Bme1390I	CCNGG	2 cut(s)	20, 557
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	79, 92
BmiI	GGNNCC	2 cut(s)	94, 271
BmrFI	CCNGG	2 cut(s)	20, 557
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	3 cut(s)	5, 30, 229
BsaJI	CCNNGG	3 cut(s)	82, 174, 189
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	20, 557
BseDI	CCNNGG	3 cut(s)	82, 174, 189
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseRI	GAGGAG	2 cut(s)	38, 350
BseXI	GCAGC	3 cut(s)	298, 469, 585
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BsiHKAI	GWGCWC	2 cut(s)	285, 342
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	201, 238
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	5, 30, 229
BsnI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
Bso31I	GGTCTC	3 cut(s)	5, 30, 229
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	285, 342
Bsp143I	GATC	4 cut(s)	99, 180, 231, 473
Bsp19I	CCATGG	2 cut(s)	174, 189
BspACI	CCGC	7 cut(s)	67, 87, 90, 267, 295, 300, 542
BspANI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	94, 271
BspPI	GGATC	1 cut(s)	481
BspTNI	GGTCTC	3 cut(s)	5, 30, 229
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	82, 174, 189
BssMI	GATC	4 cut(s)	99, 180, 231, 473
BssT1I	CCWWGG	2 cut(s)	174, 189
Bst2UI	CCWGG	2 cut(s)	20, 557
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	55, 202, 215, 281
BstDSI	CCRYGG	3 cut(s)	82, 174, 189
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 169
BstKTI	GATC	4 cut(s)	102, 183, 234, 476
BstMAI	GTCTC	3 cut(s)	5, 30, 229
BstMBI	GATC	4 cut(s)	99, 180, 231, 473
BstMWI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
BstNI	CCWGG	2 cut(s)	20, 557
BstSCI	CCNGG	2 cut(s)	18, 555
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	298, 469, 585
BstX2I	RGATCY	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
BtgI	CCRYGG	3 cut(s)	82, 174, 189
Cac8I	GCNNGC	4 cut(s)	55, 202, 215, 281
CfoI	GCGC	2 cut(s)	120, 169
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	79, 92
CseI	GACGC	2 cut(s)	46, 173
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	2 cut(s)	175, 190
DpnI	GATC	4 cut(s)	101, 182, 233, 475
DpnII	GATC	4 cut(s)	99, 180, 231, 473
EaeI	YGGCCR	2 cut(s)	198, 452
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	174, 189
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	3 cut(s)	5, 30, 229
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	18, 555
EcoT14I	CCWWGG	2 cut(s)	174, 189
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	174, 189
FaeI	CATG	2 cut(s)	178, 193
FaiI	YATR	5 cut(s)	176, 191, 366, 451, 459
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FatI	CATG	2 cut(s)	174, 189
FauI	CCCGC	2 cut(s)	302, 307
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
FspBI	CTAG	3 cut(s)	491, 588, 596
GlaI	GCGC	2 cut(s)	119, 168
GluI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 454
HapII	CCGG	2 cut(s)	201, 238
HgaI	GACGC	2 cut(s)	46, 173
HhaI	GCGC	2 cut(s)	120, 169
Hin1II	CATG	2 cut(s)	178, 193
Hin6I	GCGC	2 cut(s)	118, 167
HinP1I	GCGC	2 cut(s)	118, 167
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	246, 431, 494
HpaII	CCGG	2 cut(s)	201, 238
HphI	GGTGA	2 cut(s)	151, 280
Hpy166II	GTNNAC	3 cut(s)	82, 136, 523
Hpy188I	TCNGA	4 cut(s)	35, 274, 510, 530
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	3 cut(s)	82, 136, 523
Hpy99I	CGWCG	4 cut(s)	62, 149, 167, 278
HpyAV	CCTTC	3 cut(s)	343, 458, 511
HpyCH4III	ACNGT	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
Hsp92II	CATG	2 cut(s)	178, 193
HspAI	GCGC	2 cut(s)	118, 167
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	99, 180, 231, 473
LmnI	GCTCC	2 cut(s)	275, 337
LpnPI	CCDG	9 cut(s)	5, 32, 94, 214, 251, 328, 423, 542, 569
Lsp1109I	GCAGC	3 cut(s)	298, 469, 585
MaeI	CTAG	3 cut(s)	491, 588, 596
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	101, 182, 233, 475
MboI	GATC	4 cut(s)	99, 180, 231, 473
MboII	GAAGA	4 cut(s)	368, 395, 429, 468
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	285, 342
MlsI	TGGCCA	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	454
MroNI	GCCGGC	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	454
MspI	CCGG	2 cut(s)	201, 238
MspR9I	CCNGG	2 cut(s)	20, 557
MvaI	CCWGG	2 cut(s)	20, 557
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	210, 267, 276, 308, 542
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	2 cut(s)	174, 189
NdeII	GATC	4 cut(s)	99, 180, 231, 473
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	178, 193
NlaIV	GGNNCC	2 cut(s)	94, 271
NmuCI	GTSAC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	431, 494
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	7 cut(s)	89, 92, 269, 313, 484, 544, 575
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	18, 555
PspGI	CCWGG	2 cut(s)	18, 555
PspN4I	GGNNCC	2 cut(s)	94, 271
PspPI	GGNCC	2 cut(s)	79, 92
PsuI	RGATCY	1 cut(s)	473
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	7 cut(s)	88, 91, 268, 312, 483, 543, 574
Sau3AI	GATC	4 cut(s)	99, 180, 231, 473
Sau96I	GGNCC	2 cut(s)	79, 92
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	20, 557
SduI	GDGCHC	2 cut(s)	285, 342
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SsiI	CCGC	7 cut(s)	67, 87, 90, 267, 295, 300, 542
SspMI	CTAG	3 cut(s)	491, 588, 596
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	18, 555
StyI	CCWWGG	2 cut(s)	174, 189
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	129, 497
TauI	GCSGC	4 cut(s)	90, 93, 270, 545
TfiI	GAWTC	2 cut(s)	431, 494
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	311, 482, 573
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	3 cut(s)	491, 588, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.