Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002754.1

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

197218 .. 198196

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002754.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgttggcttctaaaacccacccttgtccatctctgatctcattccctccttccccaacaccccgcaacctccccaacaccctcaccttcttccgccccaaatgtccaccgcactcgcactcactctcaatcaaagcccaacactcggctcataccactccaggtcagctccgggtcgacattctctccgaatccctacccttcatcaagaaattccgaggcaaaaccatcgtcgtcaagtacggcgccgccgccatgaaggacgagaccctccaggccaccgtcgtcagagaccttgtcctcctcgcctgcgtcggcctccgccccatcttcgtccacggcggcggccctgagatcaacctctggctcaagtgcctcaacattgaggtcaacttccacgacagcctccgtgtcaccgacacgcccaccatggagatcgtctccaaggtcttggccggcaaagtcaacaagcatttggtctccttgatcaaccgagaaggagtcaaggccatcggcctctgcggctccgacggcaagctcatcaccgcccgccccgcccccaacgctgccaagttagagtttgtcggcgaggtggcgcgggtggaccccgcaattctctggtggcttggaagttttcagggtcagaagaagtgtagaaggcgggcttggcggtggggacggtggtggtggtggtgctgttggagtttcgtctgcggtttcggcgatttcaatttggagggcgaggcatggagcaggagaaggaggctttgggagcgcgggttgcggaagaagaagaggagaggaggagagaggtgggtggatacaaggtttgaaaaaacgctaggcgctagtcgggcggtggataggggactagcgcccagacgcctaggcgggtgcctaggcggcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

303

Amino Acids

34.02

Weight (kDa)

10.4

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	245, 894, 905
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	598, 777
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	3 cut(s)	246, 883, 906
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	730, 833
AjnI	CCWGG	2 cut(s)	160, 273
AjuI	GAANNNNNNNTTGG	4 cut(s)	649, 681, 751, 783
AluBI	AGCT	2 cut(s)	169, 538
AluI	AGCT	2 cut(s)	169, 538
Alw26I	GTCTC	4 cut(s)	260, 285, 445, 484
AoxI	GGCC	6 cut(s)	276, 316, 346, 453, 507, 514
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspA2I	CCTAGG	2 cut(s)	886, 898
AspLEI	GCGC	6 cut(s)	248, 598, 777, 848, 877, 908
AspS9I	GGNCC	2 cut(s)	347, 604
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	3 cut(s)	76, 406, 535
AvaII	GGWCC	1 cut(s)	604
AvrII	CCTAGG	2 cut(s)	886, 898
BanI	GGYRCC	3 cut(s)	245, 894, 905
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	4 cut(s)	37, 236, 335, 518
BceAI	ACGGC	3 cut(s)	259, 355, 547
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	162, 275
BciVI	GTATCC	1 cut(s)	814
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	4 cut(s)	260, 285, 445, 484
BfaI	CTAG	6 cut(s)	842, 849, 872, 887, 899, 910
BfoI	RGCGCY	4 cut(s)	249, 849, 878, 909
BfuI	GTATCC	1 cut(s)	814
BglI	GCCNNNNNGGC	2 cut(s)	522, 903
BisI	GCNGC	7 cut(s)	249, 252, 343, 346, 523, 567, 904
BlnI	CCTAGG	2 cut(s)	886, 898
BlsI	GCNGC	7 cut(s)	250, 253, 344, 347, 524, 568, 905
Bme1390I	CCNGG	3 cut(s)	162, 173, 275
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	347, 604
BmiI	GGNNCC	5 cut(s)	247, 526, 606, 896, 907
BmrFI	CCNGG	3 cut(s)	162, 173, 275
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	144, 257
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	3 cut(s)	246, 883, 906
BsaI	GGTCTC	3 cut(s)	260, 285, 484
BsaJI	CCNNGG	6 cut(s)	217, 337, 429, 444, 886, 898
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 764, 794
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	162, 275
BseDI	CCNNGG	6 cut(s)	217, 337, 429, 444, 886, 898
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	342
BseRI	GAGGAG	4 cut(s)	293, 811, 816, 819
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	2 cut(s)	598, 777
BshFI	GGCC	6 cut(s)	278, 318, 348, 455, 509, 516
BshNI	GGYRCC	3 cut(s)	245, 894, 905
BsiSI	CCGG	2 cut(s)	172, 456
BslFI	GGGAC	2 cut(s)	690, 882
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	4 cut(s)	260, 285, 445, 484
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	690, 882
BsnI	GGCC	6 cut(s)	278, 318, 348, 455, 509, 516
Bso31I	GGTCTC	3 cut(s)	260, 285, 484
Bsp143I	GATC	4 cut(s)	36, 354, 435, 486
Bsp19I	CCATGG	1 cut(s)	429
BspANI	GGCC	6 cut(s)	278, 318, 348, 455, 509, 516
BspCNI	CTCAG	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	598, 777
BspLI	GGNNCC	5 cut(s)	247, 526, 606, 896, 907
BspT107I	GGYRCC	3 cut(s)	245, 894, 905
BspTNI	GGTCTC	3 cut(s)	260, 285, 484
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	6 cut(s)	217, 337, 429, 444, 886, 898
BssMI	GATC	4 cut(s)	36, 354, 435, 486
BssNI	GRCGYC	3 cut(s)	246, 883, 906
BssT1I	CCWWGG	4 cut(s)	429, 444, 886, 898
Bst2UI	CCWGG	2 cut(s)	162, 275
Bst4CI	ACNGT	2 cut(s)	283, 681
Bst6I	CTCTTC	1 cut(s)	788
BstACI	GRCGYC	3 cut(s)	246, 883, 906
BstC8I	GCNNGC	5 cut(s)	310, 457, 536, 550, 663
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	337, 429
BstFNI	CGCG	2 cut(s)	598, 777
BstH2I	RGCGCY	4 cut(s)	249, 849, 878, 909
BstHHI	GCGC	6 cut(s)	248, 598, 777, 848, 877, 908
BstKTI	GATC	4 cut(s)	39, 357, 438, 489
BstMAI	GTCTC	4 cut(s)	260, 285, 445, 484
BstMBI	GATC	4 cut(s)	36, 354, 435, 486
BstNI	CCWGG	2 cut(s)	162, 275
BstSCI	CCNGG	3 cut(s)	160, 171, 273
BstUI	CGCG	2 cut(s)	598, 777
BstV1I	GCAGC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuI	GTATCC	1 cut(s)	814
BsuRI	GGCC	6 cut(s)	278, 318, 348, 455, 509, 516
BtgI	CCRYGG	2 cut(s)	337, 429
Cac8I	GCNNGC	5 cut(s)	310, 457, 536, 550, 663
CfoI	GCGC	6 cut(s)	248, 598, 777, 848, 877, 908
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	347, 604
CseI	GACGC	2 cut(s)	301, 891
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	256, 430, 747
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	351
DinI	GGCGCC	2 cut(s)	247, 907
DpnI	GATC	4 cut(s)	38, 356, 437, 488
DpnII	GATC	4 cut(s)	36, 354, 435, 486
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
EciI	GGCGGA	2 cut(s)	83, 311
Eco130I	CCWWGG	4 cut(s)	429, 444, 886, 898
Eco31I	GGTCTC	3 cut(s)	260, 285, 484
Eco47I	GGWCC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	160, 273
EcoT14I	CCWWGG	4 cut(s)	429, 444, 886, 898
EgeI	GGCGCC	2 cut(s)	247, 907
EheI	GGCGCC	2 cut(s)	247, 907
ErhI	CCWWGG	4 cut(s)	429, 444, 886, 898
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	259, 433, 750
FaiI	YATR	4 cut(s)	153, 257, 431, 748
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	2 cut(s)	690, 882
FatI	CATG	3 cut(s)	255, 429, 746
FauI	CCCGC	8 cut(s)	71, 557, 562, 591, 616, 654, 770, 884
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	7 cut(s)	249, 252, 343, 346, 523, 567, 904
Fsp4HI	GCNGC	7 cut(s)	249, 252, 343, 346, 523, 567, 904
FspBI	CTAG	6 cut(s)	842, 849, 872, 887, 899, 910
GlaI	GCGC	6 cut(s)	247, 597, 776, 847, 876, 907
GluI	GCNGC	7 cut(s)	249, 252, 343, 346, 523, 567, 904
GsuI	CTGGAG	2 cut(s)	144, 257
HaeII	RGCGCY	4 cut(s)	249, 849, 878, 909
HaeIII	GGCC	6 cut(s)	278, 318, 348, 455, 509, 516
HapII	CCGG	2 cut(s)	172, 456
HgaI	GACGC	2 cut(s)	301, 891
HhaI	GCGC	6 cut(s)	248, 598, 777, 848, 877, 908
Hin1I	GRCGYC	3 cut(s)	246, 883, 906
Hin1II	CATG	3 cut(s)	259, 433, 750
Hin6I	GCGC	6 cut(s)	246, 596, 775, 846, 875, 906
HinP1I	GCGC	6 cut(s)	246, 596, 775, 846, 875, 906
HincII	GTYRAC	3 cut(s)	178, 391, 466
HindII	GTYRAC	3 cut(s)	178, 391, 466
HinfI	GANTC	2 cut(s)	191, 501
HpaII	CCGG	2 cut(s)	172, 456
HphI	GGTGA	3 cut(s)	76, 406, 535
Hpy166II	GTNNAC	6 cut(s)	107, 178, 337, 391, 466, 604
Hpy188I	TCNGA	6 cut(s)	36, 190, 218, 290, 529, 645
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	6 cut(s)	107, 178, 337, 391, 466, 604
Hpy99I	CGWCG	4 cut(s)	236, 287, 317, 533
HpyAV	CCTTC	7 cut(s)	60, 97, 211, 253, 491, 651, 753
HpyCH4III	ACNGT	2 cut(s)	283, 681
HpyF3I	CTNAG	1 cut(s)	351
Hsp92I	GRCGYC	3 cut(s)	246, 883, 906
Hsp92II	CATG	3 cut(s)	259, 433, 750
HspAI	GCGC	6 cut(s)	246, 596, 775, 846, 875, 906
KasI	GGCGCC	2 cut(s)	245, 905
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	36, 354, 435, 486
LmnI	GCTCC	4 cut(s)	174, 530, 750, 772
Lsp1109I	GCAGC	1 cut(s)	553
MaeI	CTAG	6 cut(s)	842, 849, 872, 887, 899, 910
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	38, 356, 437, 488
MboI	GATC	4 cut(s)	36, 354, 435, 486
MboII	GAAGA	6 cut(s)	82, 322, 658, 799, 802, 805
MluCI	AATT	3 cut(s)	212, 612, 730
Mly113I	GGCGCC	2 cut(s)	246, 906
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	2 cut(s)	552, 680
MroNI	GCCGGC	1 cut(s)	455
MspI	CCGG	2 cut(s)	172, 456
MspR9I	CCNGG	3 cut(s)	162, 173, 275
MvaI	CCWGG	2 cut(s)	162, 275
MvnI	CGCG	2 cut(s)	598, 777
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	2 cut(s)	246, 906
NciI	CCSGG	1 cut(s)	173
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	36, 354, 435, 486
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	3 cut(s)	259, 433, 750
NlaIV	GGNNCC	5 cut(s)	247, 526, 606, 896, 907
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	412
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	7 cut(s)	250, 253, 344, 347, 524, 568, 905
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	2 cut(s)	249, 909
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	160, 273
PspGI	CCWGG	2 cut(s)	160, 273
PspN4I	GGNNCC	5 cut(s)	247, 526, 606, 896, 907
PspPI	GGNCC	2 cut(s)	347, 604
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	7 cut(s)	249, 252, 343, 346, 523, 567, 904
Sau3AI	GATC	4 cut(s)	36, 354, 435, 486
Sau96I	GGNCC	2 cut(s)	347, 604
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	3 cut(s)	162, 173, 275
SfoI	GGCGCC	2 cut(s)	247, 907
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	212, 612, 730
SspDI	GGCGCC	2 cut(s)	245, 905
SspMI	CTAG	6 cut(s)	842, 849, 872, 887, 899, 910
StyD4I	CCNGG	3 cut(s)	160, 171, 273
StyI	CCWWGG	4 cut(s)	429, 444, 886, 898
TaaI	ACNGT	2 cut(s)	283, 681
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	212, 612, 730
TauI	GCSGC	6 cut(s)	251, 254, 345, 348, 525, 906
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	193, 272
TspGWI	ACGGA	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	1 cut(s)	212
XmaJI	CCTAGG	2 cut(s)	886, 898
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	6 cut(s)	842, 849, 872, 887, 899, 910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.