Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

7305822 .. 7306490

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACACCCCGCAACCTCCCCAACACCCTCACCTTCTTCCGCCCCAAATGTCCACCGCACTCGCACTCACTCTCAATCAAAGCCCAACACCCGGCTCATACCACTCCAGGTCAGCTCCGGGTTGACATTCTCTCCGAATCCCTACCCTTCATCCAGAAATTCCGAGGCAAAACCATCGTCGTCAAGTACGGCGGCGCCGCCATGAAGGACGAGACCCTCAAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCAGCCCCATCTTGGTCCACGGCGGCGGCCCTGAGATCAACCTCTGGCTCAAGCGCCTCAACATTGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGTAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGAGAAGGAGTCAAGGCTATCGACCTCTGCGGCTTCGACGGCGAGCTCATCACCGCCCGCCCCGCCCCCAACGCAGCCAAGTTAGGGTTTGTCGGCGAGGTGGCGCGCGTGGACCCCGCAATTCTCCGGTCGATCGTGGACGACGGTCACATTCCGGTGATTGCGTCGGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

222

Amino Acids

24.01

Weight (kDa)

9.14

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 219	1.7e-22	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	3 cut(s)	422, 598, 600
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	145, 331, 576
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	169, 538
AluI	AGCT	2 cut(s)	169, 538
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	4 cut(s)	260, 285, 445, 484
AoxI	GGCC	5 cut(s)	276, 316, 346, 403, 453
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	5 cut(s)	251, 375, 424, 598, 600
AspS9I	GGNCC	3 cut(s)	334, 347, 604
AsuC2I	CCSGG	2 cut(s)	146, 173
AsuHPI	GGTGA	4 cut(s)	76, 406, 535, 661
AvaII	GGWCC	2 cut(s)	334, 604
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	3 cut(s)	37, 236, 335
BceAI	ACGGC	4 cut(s)	259, 355, 418, 547
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	2 cut(s)	146, 173
BcoDI	GTCTC	4 cut(s)	260, 285, 445, 484
BfoI	RGCGCY	2 cut(s)	252, 376
BisI	GCNGC	6 cut(s)	247, 252, 343, 346, 523, 567
BlsI	GCNGC	6 cut(s)	248, 253, 344, 347, 524, 568
Bme1390I	CCNGG	3 cut(s)	146, 162, 173
Bme18I	GGWCC	2 cut(s)	334, 604
BmgT120I	GGNCC	3 cut(s)	334, 347, 604
BmiI	GGNNCC	2 cut(s)	250, 606
BmrFI	CCNGG	3 cut(s)	146, 162, 173
BoxI	GACNNNNGTC	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	257, 353
BpuMI	CCSGG	2 cut(s)	146, 173
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	260, 285, 484
BsaJI	CCNNGG	4 cut(s)	217, 337, 429, 444
BsaWI	WCCGGW	2 cut(s)	618, 646
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 331, 576
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	217, 337, 429, 444
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	145, 331, 576
BseMII	CTCAG	2 cut(s)	334, 342
BsePI	GCGCGC	1 cut(s)	596
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	578
Bsh1236I	CGCG	3 cut(s)	422, 598, 600
Bsh1285I	CGRYCG	2 cut(s)	623, 627
BshFI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	2 cut(s)	623, 627
BsiHKAI	GWGCWC	1 cut(s)	540
BsiSI	CCGG	5 cut(s)	146, 172, 456, 619, 647
BslI	CCNNNNNNNGG	3 cut(s)	145, 331, 576
BsmAI	GTCTC	4 cut(s)	260, 285, 445, 484
BsmBI	CGTCTC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	278, 318, 348, 405, 455
Bso31I	GGTCTC	3 cut(s)	260, 285, 484
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	5 cut(s)	36, 354, 435, 486, 624
Bsp19I	CCATGG	2 cut(s)	429, 444
BspANI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BspCNI	CTCAG	2 cut(s)	333, 343
BspFNI	CGCG	3 cut(s)	422, 598, 600
BspLI	GGNNCC	2 cut(s)	250, 606
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	3 cut(s)	260, 285, 484
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	217, 337, 429, 444
BssHII	GCGCGC	1 cut(s)	596
BssMI	GATC	5 cut(s)	36, 354, 435, 486, 624
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	429, 444
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	283, 638
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	310, 536, 550, 598
BstDEI	CTNAG	2 cut(s)	320, 351
BstDSI	CCRYGG	3 cut(s)	337, 429, 444
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	3 cut(s)	422, 598, 600
BstH2I	RGCGCY	2 cut(s)	252, 376
BstHHI	GCGC	5 cut(s)	251, 375, 424, 598, 600
BstKTI	GATC	5 cut(s)	39, 357, 438, 489, 627
BstMAI	GTCTC	4 cut(s)	260, 285, 445, 484
BstMBI	GATC	5 cut(s)	36, 354, 435, 486, 624
BstMCI	CGRYCG	2 cut(s)	623, 627
BstMWI	GCNNNNNNNGC	3 cut(s)	531, 554, 563
BstNI	CCWGG	1 cut(s)	162
BstPAI	GACNNNNGTC	1 cut(s)	636
BstSCI	CCNGG	3 cut(s)	144, 160, 171
BstUI	CGCG	3 cut(s)	422, 598, 600
BstV1I	GCAGC	1 cut(s)	578
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BtgI	CCRYGG	3 cut(s)	337, 429, 444
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	310, 536, 550, 598
CfoI	GCGC	5 cut(s)	251, 375, 424, 598, 600
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	3 cut(s)	334, 347, 604
CseI	GACGC	3 cut(s)	301, 428, 645
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	256, 430, 445
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	2 cut(s)	320, 351
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	5 cut(s)	38, 356, 437, 488, 626
DpnII	GATC	5 cut(s)	36, 354, 435, 486, 624
EaeI	YGGCCR	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	429, 444
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	3 cut(s)	260, 285, 484
Eco47I	GGWCC	2 cut(s)	334, 604
Eco53kI	GAGCTC	1 cut(s)	538
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	429, 444
EcoT38I	GRGCYC	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	429, 444
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	259, 433, 448
FaiI	YATR	4 cut(s)	153, 257, 431, 446
FatI	CATG	3 cut(s)	255, 429, 444
FauI	CCCGC	4 cut(s)	71, 557, 562, 616
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	6 cut(s)	247, 252, 343, 346, 523, 567
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	6 cut(s)	247, 252, 343, 346, 523, 567
GlaI	GCGC	5 cut(s)	250, 374, 423, 597, 599
GluI	GCNGC	6 cut(s)	247, 252, 343, 346, 523, 567
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	252, 376
HaeIII	GGCC	5 cut(s)	278, 318, 348, 405, 455
HapII	CCGG	5 cut(s)	146, 172, 456, 619, 647
HgaI	GACGC	3 cut(s)	301, 428, 645
HhaI	GCGC	5 cut(s)	251, 375, 424, 598, 600
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	259, 433, 448
Hin6I	GCGC	5 cut(s)	249, 373, 422, 596, 598
HinP1I	GCGC	5 cut(s)	249, 373, 422, 596, 598
HincII	GTYRAC	3 cut(s)	178, 391, 466
HindII	GTYRAC	3 cut(s)	178, 391, 466
HinfI	GANTC	2 cut(s)	191, 501
HpaII	CCGG	5 cut(s)	146, 172, 456, 619, 647
HphI	GGTGA	4 cut(s)	76, 406, 535, 661
Hpy166II	GTNNAC	7 cut(s)	107, 178, 337, 391, 466, 604, 631
Hpy188I	TCNGA	5 cut(s)	36, 190, 218, 290, 661
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	7 cut(s)	107, 178, 337, 391, 466, 604, 631
Hpy99I	CGWCG	8 cut(s)	236, 287, 317, 404, 422, 533, 638, 661
HpyAV	CCTTC	5 cut(s)	60, 97, 211, 253, 491
HpyCH4III	ACNGT	2 cut(s)	283, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	531, 554, 563
HpyF3I	CTNAG	2 cut(s)	320, 351
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	259, 433, 448
HspAI	GCGC	5 cut(s)	249, 373, 422, 596, 598
KasI	GGCGCC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	36, 354, 435, 486, 624
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	412, 638
MalI	GATC	5 cut(s)	38, 356, 437, 488, 626
MboI	GATC	5 cut(s)	36, 354, 435, 486, 624
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	2 cut(s)	212, 612
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	5 cut(s)	146, 172, 456, 619, 647
MspR9I	CCNGG	3 cut(s)	146, 162, 173
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	3 cut(s)	422, 598, 600
MwoI	GCNNNNNNNGC	3 cut(s)	531, 554, 563
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	146, 173
NcoI	CCATGG	2 cut(s)	429, 444
NdeII	GATC	5 cut(s)	36, 354, 435, 486, 624
NlaIII	CATG	3 cut(s)	259, 433, 448
NlaIV	GGNNCC	2 cut(s)	250, 606
NmuCI	GTSAC	2 cut(s)	412, 638
PauI	GCGCGC	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	248, 253, 344, 347, 524, 568
Ple19I	CGATCG	1 cut(s)	627
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	509
PshAI	GACNNNNGTC	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	250, 606
PspPI	GGNCC	3 cut(s)	334, 347, 604
PsyI	GACNNNGTC	1 cut(s)	296
PteI	GCGCGC	1 cut(s)	596
PvuI	CGATCG	1 cut(s)	627
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	540
SatI	GCNGC	6 cut(s)	247, 252, 343, 346, 523, 567
Sau3AI	GATC	5 cut(s)	36, 354, 435, 486, 624
Sau96I	GGNCC	3 cut(s)	334, 347, 604
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	3 cut(s)	146, 162, 173
SduI	GDGCHC	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	2 cut(s)	334, 604
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	272, 368
SmoI	CTYRAG	2 cut(s)	272, 368
Sse9I	AATT	2 cut(s)	212, 612
SspDI	GGCGCC	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	144, 160, 171
StyI	CCWWGG	2 cut(s)	429, 444
TaaI	ACNGT	2 cut(s)	283, 638
TaqI	TCGA	3 cut(s)	513, 528, 623
TasI	AATT	2 cut(s)	212, 612
TauI	GCSGC	5 cut(s)	249, 254, 345, 348, 525
TfiI	GAWTC	1 cut(s)	191
TseFI	GTSAC	2 cut(s)	412, 638
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	2 cut(s)	412, 638
TspDTI	ATGAA	2 cut(s)	193, 272
TspGWI	ACGGA	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	334, 604
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.