Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

59470497 .. 59470901

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGATCGTCTCCATGGTCTTGGCCGACAAAGTCAACAAGCATTTGGTCTCCCTGATCAACCGGGAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCGACGGCGAGCTCATCATCGCCCACCAAGTTAGGGTTTGTCGGCGAGGTGGCGCGCGTGGACCCCGCAATTCTCCGGTCGATCGTGGACGACGGCCACATTCCGGTGATTGCGTCGGAGTGGTAAATGCTGTTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAGAAGGCGGGCTTCACGGTGGGGACTGTGGTGGTGGTGCTGTTGGAGTTTCGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAGCAGGAGAAGGAGGCTTTGGGAGCGCGGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

134

Amino Acids

13.69

Weight (kDa)

9.24

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	152, 154, 395
AciI	CCGC	5 cut(s)	93, 163, 282, 332, 395
AcoI	YGGCCR	2 cut(s)	24, 191
AfiI	CCNNNNNNNGG	2 cut(s)	130, 200
AgsI	TTSAA	2 cut(s)	239, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AloI	GAACNNNNNNTCC	1 cut(s)	382
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	16, 55
AoxI	GGCC	4 cut(s)	24, 78, 85, 191
AspLEI	GCGC	3 cut(s)	152, 154, 395
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	118, 206
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	16, 55
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	97, 160, 400
BmrFI	CCNGG	1 cut(s)	65
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	2 cut(s)	172, 200
BsaXI	ACNNNNNCTCC	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 200
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	130, 200
BsePI	GCGCGC	1 cut(s)	150
Bsh1236I	CGCG	3 cut(s)	152, 154, 395
Bsh1285I	CGRYCG	2 cut(s)	177, 181
BshFI	GGCC	4 cut(s)	26, 80, 87, 193
BsiEI	CGRYCG	2 cut(s)	177, 181
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	64, 173, 201
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	130, 200
BsmAI	GTCTC	2 cut(s)	16, 55
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	4 cut(s)	26, 80, 87, 193
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 57, 178
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	5 cut(s)	93, 163, 282, 332, 395
BspANI	GGCC	4 cut(s)	26, 80, 87, 193
BspFNI	CGCG	3 cut(s)	152, 154, 395
BspLI	GGNNCC	3 cut(s)	97, 160, 400
BspTNI	GGTCTC	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	15
BssHII	GCGCGC	1 cut(s)	150
BssMI	GATC	3 cut(s)	6, 57, 178
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	293, 302
BstC8I	GCNNGC	3 cut(s)	107, 152, 284
BstDSI	CCRYGG	1 cut(s)	15
BstFNI	CGCG	3 cut(s)	152, 154, 395
BstHHI	GCGC	3 cut(s)	152, 154, 395
BstKTI	GATC	3 cut(s)	9, 60, 181
BstMAI	GTCTC	2 cut(s)	16, 55
BstMBI	GATC	3 cut(s)	6, 57, 178
BstMCI	CGRYCG	2 cut(s)	177, 181
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 102, 338, 390
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	3 cut(s)	152, 154, 395
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	26, 80, 87, 193
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	100
Cac8I	GCNNGC	3 cut(s)	107, 152, 284
CfoI	GCGC	3 cut(s)	152, 154, 395
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	199
CviAII	CATG	2 cut(s)	16, 365
CviJI	RGCY	9 cut(s)	26, 80, 87, 96, 109, 193, 246, 286, 384
CviKI_1	RGCY	9 cut(s)	26, 80, 87, 96, 109, 193, 246, 286, 384
DpnI	GATC	3 cut(s)	8, 59, 180
DpnII	GATC	3 cut(s)	6, 57, 178
EaeI	YGGCCR	2 cut(s)	24, 191
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	19, 368
FaiI	YATR	2 cut(s)	17, 366
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	15, 364
FauI	CCCGC	3 cut(s)	170, 275, 388
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	94
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	94
GlaI	GCGC	3 cut(s)	151, 153, 394
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	26, 80, 87, 193
HapII	CCGG	3 cut(s)	64, 173, 201
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	3 cut(s)	152, 154, 395
Hin1II	CATG	2 cut(s)	19, 368
Hin6I	GCGC	3 cut(s)	150, 152, 393
HinP1I	GCGC	3 cut(s)	150, 152, 393
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	3 cut(s)	64, 173, 201
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	3 cut(s)	37, 158, 185
Hpy188I	TCNGA	3 cut(s)	100, 215, 266
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	3 cut(s)	37, 158, 185
Hpy99I	CGWCG	3 cut(s)	104, 192, 215
HpyAV	CCTTC	4 cut(s)	62, 233, 272, 371
HpyCH4III	ACNGT	2 cut(s)	293, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 102, 338, 390
Hsp92II	CATG	2 cut(s)	19, 368
HspAI	GCGC	3 cut(s)	150, 152, 393
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 57, 178
LmnI	GCTCC	3 cut(s)	101, 368, 390
LpnPI	CCDG	6 cut(s)	68, 77, 186, 214, 244, 357
MalI	GATC	3 cut(s)	8, 59, 180
MboI	GATC	3 cut(s)	6, 57, 178
MboII	GAAGA	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	166, 348
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	3 cut(s)	123, 193, 298
MnlI	CCTC	6 cut(s)	98, 137, 226, 348, 354, 374
MslI	CAYNNNNRTG	1 cut(s)	201
MspI	CCGG	3 cut(s)	64, 173, 201
MspR9I	CCNGG	1 cut(s)	65
MvnI	CGCG	3 cut(s)	152, 154, 395
MwoI	GCNNNNNNNGC	4 cut(s)	93, 102, 338, 390
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	6, 57, 178
NlaIII	CATG	2 cut(s)	19, 368
NlaIV	GGNNCC	3 cut(s)	97, 160, 400
PauI	GCGCGC	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	95
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	97, 160, 400
PspPI	GGNCC	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	32
PteI	GCGCGC	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	3 cut(s)	6, 57, 178
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	111, 148, 237, 244
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	166, 348
SsiI	CCGC	5 cut(s)	93, 163, 282, 332, 395
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	293, 302
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	166, 348
TauI	GCSGC	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.