Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

2196970 .. 2197545

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACACCCCGCAACCTCCCCAACACCCTCACCTTCTTCCGCCCCAAATGTCCACCGCACTCGCACTCACTCTCAATCAAAGCCCAACACCCAGCTCATACCACTCCAGGTCAGCTCCGGGTCGACATTCTCTCCGAATCCCTACCCTTCATCCAGAAATTCCGAGGCAAAACCATCGTCGTCAAGTACGGCGGCGCCGCCATGAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCAGCCCCATCTTGGTCCACGGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTTAACATTGAGATCAACTTCCACGACGGCCTCCATGTCACCGACGCGCCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGAGAAGGAGTCAACGCCATCGACCTCTGTGGCTCCGACGGTGAGCTCATCACCCCCGCCCCGCCCCCAACACCGCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

191

Amino Acids

20.59

Weight (kDa)

8.75

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 180	2.8e-17	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	422
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	160, 273
AluBI	AGCT	3 cut(s)	149, 169, 538
AluI	AGCT	3 cut(s)	149, 169, 538
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	4 cut(s)	260, 285, 445, 484
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	5 cut(s)	276, 316, 346, 403, 453
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	3 cut(s)	251, 375, 424
AspS9I	GGNCC	2 cut(s)	334, 347
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	4 cut(s)	76, 406, 535, 545
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	320
BccI	CCATC	4 cut(s)	37, 236, 335, 518
BceAI	ACGGC	3 cut(s)	259, 355, 418
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	2 cut(s)	162, 275
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	4 cut(s)	260, 285, 445, 484
BfoI	RGCGCY	2 cut(s)	252, 376
BisI	GCNGC	4 cut(s)	247, 252, 343, 346
BlsI	GCNGC	4 cut(s)	248, 253, 344, 347
Bme1390I	CCNGG	3 cut(s)	162, 173, 275
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	334, 347
BmiI	GGNNCC	3 cut(s)	250, 349, 526
BmrFI	CCNGG	3 cut(s)	162, 173, 275
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	144, 257
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	260, 285, 484
BsaJI	CCNNGG	4 cut(s)	217, 337, 429, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	162, 275
BseDI	CCNNGG	4 cut(s)	217, 337, 429, 444
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	172, 456
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	4 cut(s)	260, 285, 445, 484
BsmBI	CGTCTC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	278, 318, 348, 405, 455
Bso31I	GGTCTC	3 cut(s)	260, 285, 484
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	5 cut(s)	36, 354, 387, 435, 486
Bsp19I	CCATGG	2 cut(s)	429, 444
BspANI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BspCNI	CTCAG	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	3 cut(s)	250, 349, 526
BspT107I	GGYRCC	1 cut(s)	248
BspTNI	GGTCTC	3 cut(s)	260, 285, 484
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	4 cut(s)	217, 337, 429, 444
BssMI	GATC	5 cut(s)	36, 354, 387, 435, 486
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	429, 444
Bst2UI	CCWGG	2 cut(s)	162, 275
Bst4CI	ACNGT	2 cut(s)	283, 533
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	310, 457
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	3 cut(s)	337, 429, 444
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	2 cut(s)	252, 376
BstHHI	GCGC	3 cut(s)	251, 375, 424
BstKTI	GATC	5 cut(s)	39, 357, 390, 438, 489
BstMAI	GTCTC	4 cut(s)	260, 285, 445, 484
BstMBI	GATC	5 cut(s)	36, 354, 387, 435, 486
BstNI	CCWGG	2 cut(s)	162, 275
BstSCI	CCNGG	3 cut(s)	160, 171, 273
BstUI	CGCG	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	5 cut(s)	278, 318, 348, 405, 455
BtgI	CCRYGG	3 cut(s)	337, 429, 444
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	310, 457
CfoI	GCGC	3 cut(s)	251, 375, 424
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	334, 347
CseI	GACGC	2 cut(s)	301, 428
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	4 cut(s)	256, 410, 430, 445
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	320
DinI	GGCGCC	1 cut(s)	250
DpnI	GATC	5 cut(s)	38, 356, 389, 437, 488
DpnII	GATC	5 cut(s)	36, 354, 387, 435, 486
EaeI	YGGCCR	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	429, 444
Eco24I	GRGCYC	1 cut(s)	540
Eco31I	GGTCTC	3 cut(s)	260, 285, 484
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	160, 273
EcoT14I	CCWWGG	2 cut(s)	429, 444
EcoT38I	GRGCYC	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	250
EheI	GGCGCC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	429, 444
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	4 cut(s)	259, 413, 433, 448
FaiI	YATR	5 cut(s)	153, 257, 411, 431, 446
FatI	CATG	4 cut(s)	255, 409, 429, 444
FauI	CCCGC	3 cut(s)	71, 556, 561
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	4 cut(s)	247, 252, 343, 346
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	4 cut(s)	247, 252, 343, 346
GlaI	GCGC	3 cut(s)	250, 374, 423
GluI	GCNGC	4 cut(s)	247, 252, 343, 346
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	2 cut(s)	144, 257
HaeII	RGCGCY	2 cut(s)	252, 376
HaeIII	GGCC	5 cut(s)	278, 318, 348, 405, 455
HapII	CCGG	2 cut(s)	172, 456
HgaI	GACGC	2 cut(s)	301, 428
HhaI	GCGC	3 cut(s)	251, 375, 424
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	259, 413, 433, 448
Hin6I	GCGC	3 cut(s)	249, 373, 422
HinP1I	GCGC	3 cut(s)	249, 373, 422
HincII	GTYRAC	3 cut(s)	178, 466, 505
HindII	GTYRAC	3 cut(s)	178, 466, 505
HinfI	GANTC	2 cut(s)	191, 501
HpaII	CCGG	2 cut(s)	172, 456
HphI	GGTGA	4 cut(s)	76, 406, 535, 545
Hpy166II	GTNNAC	5 cut(s)	107, 178, 337, 466, 505
Hpy188I	TCNGA	5 cut(s)	36, 190, 218, 290, 529
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	5 cut(s)	107, 178, 337, 466, 505
Hpy99I	CGWCG	6 cut(s)	236, 287, 317, 404, 422, 533
HpyAV	CCTTC	5 cut(s)	60, 97, 211, 253, 491
HpyCH4III	ACNGT	2 cut(s)	283, 533
HpyF3I	CTNAG	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	259, 413, 433, 448
HspAI	GCGC	3 cut(s)	249, 373, 422
KasI	GGCGCC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	5 cut(s)	36, 354, 387, 435, 486
LmnI	GCTCC	2 cut(s)	174, 530
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	5 cut(s)	38, 356, 389, 437, 488
MboI	GATC	5 cut(s)	36, 354, 387, 435, 486
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	1 cut(s)	212
Mly113I	GGCGCC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	552
MroNI	GCCGGC	1 cut(s)	455
MseI	TTAA	1 cut(s)	378
MspI	CCGG	2 cut(s)	172, 456
MspR9I	CCNGG	3 cut(s)	162, 173, 275
MvaI	CCWGG	2 cut(s)	162, 275
MvnI	CGCG	1 cut(s)	422
NaeI	GCCGGC	1 cut(s)	457
NarI	GGCGCC	1 cut(s)	249
NciI	CCSGG	1 cut(s)	173
NcoI	CCATGG	2 cut(s)	429, 444
NdeII	GATC	5 cut(s)	36, 354, 387, 435, 486
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	4 cut(s)	259, 413, 433, 448
NlaIV	GGNNCC	3 cut(s)	250, 349, 526
NmuCI	GTSAC	1 cut(s)	412
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	4 cut(s)	248, 253, 344, 347
PleI	GAGTC	1 cut(s)	509
PluTI	GGCGCC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	2 cut(s)	160, 273
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	2 cut(s)	160, 273
PspN4I	GGNNCC	3 cut(s)	250, 349, 526
PspPI	GGNCC	2 cut(s)	334, 347
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SacI	GAGCTC	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	247, 252, 343, 346
Sau3AI	GATC	5 cut(s)	36, 354, 387, 435, 486
Sau96I	GGNCC	2 cut(s)	334, 347
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	3 cut(s)	162, 173, 275
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	9 cut(s)	72, 89, 151, 166, 171, 297, 363, 519, 540
SfoI	GGCGCC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	212
SspDI	GGCGCC	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	3 cut(s)	160, 171, 273
StyI	CCWWGG	2 cut(s)	429, 444
TaaI	ACNGT	2 cut(s)	283, 533
TaqI	TCGA	2 cut(s)	177, 513
TasI	AATT	1 cut(s)	212
TauI	GCSGC	4 cut(s)	249, 254, 345, 348
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	193, 272
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.