Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

45340038 .. 45340573

Gene Structure 536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGGGAAGGAGTTAAGGCCATCGGCCTCTGCGGCTCCGACGACGAGCTCATCACCTCCCGCCCCGCCCCCAACGCCGCCAAAAAATGGAATGAGGAGCACAGGGAGAAGGGAGAAGATGCTTATGATGATAACATTTTTGAAGATTTGGTAAGGAGATTTGAGACACCAGATAGAAGAAATCGGTGGGATTCCCCTTTGTTTGAGTTATGGCCACATAGAGAAGGTGTAGGATCTTCTGCTGCCATTCTAGATTCTATTTCGTATCTGACAAAGAAGGTGGACTTCGGAGAGGCTACGGCGGCTCACGGCGACCTGGCTTGGAGGAATGGCAGCTACGGGTTGTCTAGGCTTCTAGGCAGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009653 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010449 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0019219 GO:0019222 GO:0022622 GO:0030488 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034470 GO:0034641 GO:0034660 GO:0035266 GO:0040007 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048532 GO:0048589 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0080178 GO:0090304 GO:0099402 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KTI12

Protein Analysis

142

Amino Acids

15.91

Weight (kDa)

5.82

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KTI12	PF08433	42 - 92	1.2e-12	Chromatin associated protein KTI12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	147
AciI	CCGC	5 cut(s)	93, 121, 126, 138, 362
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	2 cut(s)	24, 272
AfiI	CCNNNNNNNGG	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	2 cut(s)	109, 396
AluI	AGCT	2 cut(s)	109, 396
Alw21I	GWGCWC	2 cut(s)	111, 162
Alw26I	GTCTC	3 cut(s)	16, 55, 218
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	4 cut(s)	24, 78, 85, 272
ApeKI	GCWGC	2 cut(s)	302, 393
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 162
BbvI	GCAGC	2 cut(s)	289, 405
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	375, 385
BciT130I	CCWGG	1 cut(s)	377
BclI	TGATCA	1 cut(s)	57
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	16, 55, 218
BfaI	CTAG	3 cut(s)	311, 408, 416
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	5 cut(s)	94, 138, 303, 363, 394
BlsI	GCNGC	5 cut(s)	95, 139, 304, 364, 395
Bme1390I	CCNGG	2 cut(s)	65, 377
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	2 cut(s)	65, 377
BmsI	GCATC	1 cut(s)	169
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	289, 405
BshFI	GGCC	4 cut(s)	26, 80, 87, 274
BsiHKAI	GWGCWC	2 cut(s)	111, 162
BsiSI	CCGG	2 cut(s)	27, 64
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	16, 55, 218
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	4 cut(s)	26, 80, 87, 274
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	111, 162
Bsp143I	GATC	3 cut(s)	6, 57, 293
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	5 cut(s)	93, 121, 126, 138, 362
BspANI	GGCC	4 cut(s)	26, 80, 87, 274
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	6, 57, 293
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	28
BstDSI	CCRYGG	1 cut(s)	15
BstKTI	GATC	3 cut(s)	9, 60, 296
BstMAI	GTCTC	3 cut(s)	16, 55, 218
BstMBI	GATC	3 cut(s)	6, 57, 293
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 134, 362
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	63, 375
BstV1I	GCAGC	2 cut(s)	289, 405
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	4 cut(s)	26, 80, 87, 274
BtgI	CCRYGG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	1 cut(s)	16
DpnI	GATC	3 cut(s)	8, 59, 295
DpnII	GATC	3 cut(s)	6, 57, 293
EaeI	YGGCCR	2 cut(s)	24, 272
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 186, 271, 279
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	1 cut(s)	15
FauI	CCCGC	2 cut(s)	128, 133
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	94, 138, 303, 363, 394
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	94, 138, 303, 363, 394
FspBI	CTAG	3 cut(s)	311, 408, 416
GluI	GCNGC	5 cut(s)	94, 138, 303, 363, 394
HaeIII	GGCC	4 cut(s)	26, 80, 87, 274
HapII	CCGG	2 cut(s)	27, 64
Hin1II	CATG	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	251, 314
HpaII	CCGG	2 cut(s)	27, 64
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	37, 343
Hpy188I	TCNGA	3 cut(s)	100, 330, 350
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	2 cut(s)	37, 343
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	4 cut(s)	62, 163, 278, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 134, 362
Hsp92II	CATG	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 57, 293
LmnI	GCTCC	2 cut(s)	101, 157
LpnPI	CCDG	6 cut(s)	40, 77, 148, 243, 362, 389
Lsp1109I	GCAGC	2 cut(s)	289, 405
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	311, 408, 416
MalI	GATC	3 cut(s)	8, 59, 295
MboI	GATC	3 cut(s)	6, 57, 293
MboII	GAAGA	4 cut(s)	188, 215, 249, 288
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	2 cut(s)	111, 162
MlsI	TGGCCA	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	98, 127, 148, 346, 378
Mox20I	TGGCCA	1 cut(s)	274
MroNI	GCCGGC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	274
MseI	TTAA	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	274
MspI	CCGG	2 cut(s)	27, 64
MspR9I	CCNGG	2 cut(s)	65, 377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	93, 134, 362
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	6, 57, 293
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	97
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	251, 314
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	5 cut(s)	95, 139, 304, 364, 395
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	5 cut(s)	94, 138, 303, 363, 394
Sau3AI	GATC	3 cut(s)	6, 57, 293
ScrFI	CCNGG	2 cut(s)	65, 377
SduI	GDGCHC	2 cut(s)	111, 162
SetI	ASST	7 cut(s)	111, 119, 289, 342, 378, 398, 428
SfaNI	GCATC	1 cut(s)	169
SsiI	CCGC	5 cut(s)	93, 121, 126, 138, 362
SspMI	CTAG	3 cut(s)	311, 408, 416
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	63, 375
StyI	CCWWGG	1 cut(s)	15
TauI	GCSGC	3 cut(s)	96, 140, 365
TfiI	GAWTC	2 cut(s)	251, 314
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	302, 393
Van91I	CCANNNNNTGG	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	3 cut(s)	311, 408, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.