Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

15946670 .. 15946909

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG181100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGAGAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCGACGGCGAGCTCATCACCGCCCTCCCCGCCCCCAACGCTGCCAAGTTAGGGTTTGTCGGCGAGATGGCGCTCGTGGACCCCTCAATTCTCTGGTCGATCGTGGATGACGGCCACATTCTGGTGATTGCGTCGGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

79

Amino Acids

8.29

Weight (kDa)

4.82

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	3 cut(s)	93, 117, 126
AcoI	YGGCCR	2 cut(s)	24, 208
AfiI	CCNNNNNNNGG	2 cut(s)	147, 217
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	16, 55
AoxI	GGCC	4 cut(s)	24, 78, 85, 208
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	106, 232
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	89, 157
BceAI	ACGGC	2 cut(s)	118, 223
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	2 cut(s)	16, 55
BfoI	RGCGCY	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	94, 138
BlsI	GCNGC	2 cut(s)	95, 139
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	97, 177
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 217
Bse118I	RCCGGY	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	147, 217
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	4 cut(s)	26, 80, 87, 210
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	147, 217
BsmAI	GTCTC	2 cut(s)	16, 55
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	4 cut(s)	26, 80, 87, 210
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	6, 57, 195
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	93, 117, 126
BspANI	GGCC	4 cut(s)	26, 80, 87, 210
BspLI	GGNNCC	2 cut(s)	97, 177
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	26
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	6, 57, 195
BssSI	CACGAG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	28, 107
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	9, 60, 198
BstMAI	GTCTC	2 cut(s)	16, 55
BstMBI	GATC	3 cut(s)	6, 57, 195
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 102, 125, 134
BstV1I	GCAGC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	26, 80, 87, 210
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	28, 107
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	216
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	26, 80, 87, 96, 109, 210
CviKI_1	RGCY	6 cut(s)	26, 80, 87, 96, 109, 210
DpnI	GATC	3 cut(s)	8, 59, 197
DpnII	GATC	3 cut(s)	6, 57, 195
EaeI	YGGCCR	2 cut(s)	24, 208
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	19
FaiI	YATR	1 cut(s)	17
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	94, 138
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	2 cut(s)	94, 138
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	94, 138
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	26, 80, 87, 210
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	106, 232
Hpy166II	GTNNAC	2 cut(s)	37, 175
Hpy188I	TCNGA	2 cut(s)	100, 232
Hpy8I	GTNNAC	2 cut(s)	37, 175
Hpy99I	CGWCG	2 cut(s)	104, 232
HpyAV	CCTTC	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 102, 125, 134
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	6, 57, 195
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	40, 175, 203
Lsp1109I	GCAGC	1 cut(s)	124
MalI	GATC	3 cut(s)	8, 59, 197
MboI	GATC	3 cut(s)	6, 57, 195
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	2 cut(s)	123, 210
MnlI	CCTC	3 cut(s)	98, 131, 190
MroNI	GCCGGC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	93, 102, 125, 134
NaeI	GCCGGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	3 cut(s)	6, 57, 195
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	2 cut(s)	97, 177
PdiI	GCCGGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	95, 139
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	97, 177
PspPI	GGNCC	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	111
SatI	GCNGC	2 cut(s)	94, 138
Sau3AI	GATC	3 cut(s)	6, 57, 195
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	1 cut(s)	111
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	3 cut(s)	93, 117, 126
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	183
TauI	GCSGC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.