Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

21199621 .. 21204836

Gene Structure 5216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007795

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCCGCCCCATCTTGGTCCACGACGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCACCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCCTGATCAACCGGGAAGGAGTCAAGGCCATCGGCCTCTGCAGCTCCGACGGCGAGCTCATCACAGAGGCTGTTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAGAAGGCGGGCTTGGCGGTGGGGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGTTGGAGTTTCGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAGCAGGAGAAGGAGGCTTTGGGAGCGCGGGTTGCGGAAGAAGAAGAGGAGAGGAGGAGAGAGATAGAGATCGTACGGTAGGTGGGAGGCCGGACTTGAGCTATTGGACCGAGCGGCGCTTGACGTTGGAGTCCAGGTGCGTCTCGCGTCGAGGTCGTGCAACAGGGTCGACTGCCGGAGACCCTGCTATCGGGGGCGGCGGTGGCGGTGGCGGTGATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

227

Amino Acids

23.2

Weight (kDa)

6.45

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	8 - 100	1.2e-10	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	586
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	2 cut(s)	485, 604
AcoI	YGGCCR	1 cut(s)	198
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	76, 647
AgsI	TTSAA	2 cut(s)	308, 438
AjnI	CCWGG	2 cut(s)	18, 590
AjuI	GAANNNNNNNTTGG	4 cut(s)	339, 371, 459, 491
AluBI	AGCT	3 cut(s)	270, 283, 558
AluI	AGCT	3 cut(s)	270, 283, 558
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	6 cut(s)	5, 30, 190, 229, 604, 630
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	8 cut(s)	21, 61, 91, 148, 198, 252, 259, 545
ApeKI	GCWGC	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	120, 485, 576
AspS9I	GGNCC	3 cut(s)	79, 92, 564
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	79, 564
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	3 cut(s)	80, 263, 668
BceAI	ACGGC	3 cut(s)	103, 163, 292
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	2 cut(s)	20, 592
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	6 cut(s)	5, 30, 190, 229, 604, 630
BfaI	CTAG	1 cut(s)	679
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	2 cut(s)	121, 577
BisI	GCNGC	4 cut(s)	91, 268, 572, 655
BlsI	GCNGC	4 cut(s)	92, 269, 573, 656
Bme1390I	CCNGG	3 cut(s)	20, 239, 592
Bme18I	GGWCC	2 cut(s)	79, 564
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	79, 92, 564
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	3 cut(s)	20, 239, 592
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	2 cut(s)	98, 574
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	4 cut(s)	5, 30, 229, 630
BsaJI	CCNNGG	2 cut(s)	174, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	472, 502, 578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 647
Bse118I	RCCGGY	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	20, 592
BseDI	CCNNGG	2 cut(s)	174, 189
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	76, 647
BseRI	GAGGAG	4 cut(s)	38, 519, 524, 527
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	485, 604
BshFI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 547
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	4 cut(s)	201, 238, 548, 633
BsiWI	CGTACG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	76, 647
BsmAI	GTCTC	6 cut(s)	5, 30, 190, 229, 604, 630
BsmBI	CGTCTC	2 cut(s)	190, 604
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 547
Bso31I	GGTCTC	4 cut(s)	5, 30, 229, 630
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	99, 180, 231, 526
Bsp19I	CCATGG	2 cut(s)	174, 189
BspANI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 547
BspFNI	CGCG	2 cut(s)	485, 604
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	269
BspTNI	GGTCTC	4 cut(s)	5, 30, 229, 630
BsrBI	CCGCTC	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	174, 189
BssMI	GATC	4 cut(s)	99, 180, 231, 526
BssT1I	CCWWGG	2 cut(s)	174, 189
Bst2UI	CCWGG	2 cut(s)	20, 592
Bst4CI	ACNGT	3 cut(s)	28, 371, 535
Bst6I	CTCTTC	1 cut(s)	496
BstC8I	GCNNGC	4 cut(s)	55, 202, 281, 353
BstDSI	CCRYGG	2 cut(s)	174, 189
BstFNI	CGCG	2 cut(s)	485, 604
BstH2I	RGCGCY	2 cut(s)	121, 577
BstHHI	GCGC	3 cut(s)	120, 485, 576
BstKTI	GATC	4 cut(s)	102, 183, 234, 529
BstMAI	GTCTC	6 cut(s)	5, 30, 190, 229, 604, 630
BstMBI	GATC	4 cut(s)	99, 180, 231, 526
BstMWI	GCNNNNNNNGC	8 cut(s)	267, 276, 357, 428, 480, 489, 660, 675
BstNI	CCWGG	2 cut(s)	20, 592
BstSCI	CCNGG	3 cut(s)	18, 237, 590
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	485, 604
BstV1I	GCAGC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 547
BtgI	CCRYGG	2 cut(s)	174, 189
Cac8I	GCNNGC	4 cut(s)	55, 202, 281, 353
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	3 cut(s)	120, 485, 576
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	79, 92, 564
CseI	GACGC	4 cut(s)	46, 173, 586, 593
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	3 cut(s)	175, 190, 455
CviQI	GTAC	1 cut(s)	531
DpnI	GATC	4 cut(s)	101, 182, 233, 528
DpnII	GATC	4 cut(s)	99, 180, 231, 526
DrdI	GACNNNNNNGTC	1 cut(s)	586
DseDI	GACNNNNNNGTC	1 cut(s)	586
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	174, 189
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	4 cut(s)	5, 30, 229, 630
Eco47I	GGWCC	2 cut(s)	79, 564
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	18, 590
EcoT14I	CCWWGG	2 cut(s)	174, 189
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	174, 189
Esp3I	CGTCTC	2 cut(s)	190, 604
FaeI	CATG	3 cut(s)	178, 193, 458
FaiI	YATR	3 cut(s)	176, 191, 456
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	174, 189, 454
FauI	CCCGC	2 cut(s)	344, 478
FbaI	TGATCA	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	4 cut(s)	91, 268, 572, 655
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	91, 268, 572, 655
FspBI	CTAG	1 cut(s)	679
GlaI	GCGC	3 cut(s)	119, 484, 575
GluI	GCNGC	4 cut(s)	91, 268, 572, 655
HaeII	RGCGCY	2 cut(s)	121, 577
HaeIII	GGCC	8 cut(s)	23, 63, 93, 150, 200, 254, 261, 547
HapII	CCGG	4 cut(s)	201, 238, 548, 633
HgaI	GACGC	4 cut(s)	46, 173, 586, 593
HhaI	GCGC	3 cut(s)	120, 485, 576
Hin1II	CATG	3 cut(s)	178, 193, 458
Hin6I	GCGC	3 cut(s)	118, 483, 574
HinP1I	GCGC	3 cut(s)	118, 483, 574
HincII	GTYRAC	3 cut(s)	136, 211, 627
HindII	GTYRAC	3 cut(s)	136, 211, 627
HinfI	GANTC	2 cut(s)	246, 587
HpaII	CCGG	4 cut(s)	201, 238, 548, 633
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	4 cut(s)	82, 136, 211, 627
Hpy188I	TCNGA	3 cut(s)	35, 274, 335
Hpy8I	GTNNAC	4 cut(s)	82, 136, 211, 627
Hpy99I	CGWCG	7 cut(s)	32, 62, 89, 149, 167, 278, 609
HpyAV	CCTTC	4 cut(s)	236, 302, 341, 461
HpyCH4III	ACNGT	3 cut(s)	28, 371, 535
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	2 cut(s)	267, 617
HpyF10VI	GCNNNNNNNGC	8 cut(s)	267, 276, 357, 428, 480, 489, 660, 675
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	178, 193, 458
HspAI	GCGC	3 cut(s)	118, 483, 574
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	99, 180, 231, 526
LmnI	GCTCC	3 cut(s)	275, 458, 480
Lsp1109I	GCAGC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	679
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	101, 182, 233, 528
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	4 cut(s)	99, 180, 231, 526
MboII	GAAGA	4 cut(s)	348, 507, 510, 513
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	255, 596
MmeI	TCCRAC	3 cut(s)	297, 388, 564
MroNI	GCCGGC	1 cut(s)	200
MspI	CCGG	4 cut(s)	201, 238, 548, 633
MspR9I	CCNGG	3 cut(s)	20, 239, 592
MvaI	CCWGG	2 cut(s)	20, 592
MvnI	CGCG	2 cut(s)	485, 604
MwoI	GCNNNNNNNGC	8 cut(s)	267, 276, 357, 428, 480, 489, 660, 675
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	174, 189
NdeII	GATC	4 cut(s)	99, 180, 231, 526
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	178, 193, 458
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	202
Pfl23II	CGTACG	1 cut(s)	530
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	92, 269, 573, 656
PleI	GAGTC	2 cut(s)	254, 595
PpsI	GAGTC	2 cut(s)	254, 595
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	18, 590
PspGI	CCWGG	2 cut(s)	18, 590
PspLI	CGTACG	1 cut(s)	530
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	3 cut(s)	79, 92, 564
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	1 cut(s)	625
SatI	GCNGC	4 cut(s)	91, 268, 572, 655
Sau3AI	GATC	4 cut(s)	99, 180, 231, 526
Sau96I	GGNCC	3 cut(s)	79, 92, 564
SchI	GAGTC	2 cut(s)	255, 596
ScrFI	CCNGG	3 cut(s)	20, 239, 592
SduI	GDGCHC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	79, 564
SmlI	CTYRAG	2 cut(s)	113, 553
SmoI	CTYRAG	2 cut(s)	113, 553
Sse9I	AATT	1 cut(s)	438
SspMI	CTAG	1 cut(s)	679
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	18, 237, 590
StyI	CCWWGG	2 cut(s)	174, 189
TaaI	ACNGT	3 cut(s)	28, 371, 535
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	3 cut(s)	129, 607, 626
TaqII	GACCGA	1 cut(s)	581
TasI	AATT	1 cut(s)	438
TauI	GCSGC	3 cut(s)	93, 574, 657
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	79, 564
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.