Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

24619456 .. 24621395

Gene Structure 1940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTGGCTTCTAAAACCCACCCTTGTCCATCTCTGATCTCATTCCCTCCTTCCCCAACATCCCTCAACCTCCCCAACACCCTCACCTTCTTCTGCCCCAAATGTCCACCGCACTCGCACTCACTCTCAATCAAAGCCCAACACCCGGCTCATACCACTCCAGGTCAGCTCCGGGTCGACATTCTCTCCGAATCCCTACCCTTCATCCAGAAATTCCGAGGCAAAACCATCATCGTCAAGTACGGCGGCGCTGCCATAAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCCGCCCTATCTTGGTCCACGGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACCATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCCTGATCAACCGGGAAGGAGTCAAGGCCATCGGCCTCTGCGGCTCCCACGGGTCAGAAGAAGTGTATAAGGCGGGCTTGGCGGTGGGGACGGTGGTGGTGGTGGTGGTGGTGCTGTTGGAGTTTTGTTTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAACAGGAGAAGGAGGCTTTGGGAGCGCGGGTTGCGGAAGAAGAAGAGGAGAGGAGGAGAGAGGTGAACAAATTGAGGAAGTCAGGGCTGAGAAGAATCGGCGGTGGAACAGGGAATCAGAATTCGAAATTCGGAATTCAGATTAGGGAATCAGCGGTGGTGGTAGGGGAAGTCAGGGCTGGTGGAGGAGGAGTACTTGGCGTGGGTTATGGTTCGGGCAAGAAGAGTGAGGAGGCGGAGGGCGGAGGTTGCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

302

Amino Acids

32.26

Weight (kDa)

9.38

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	75 - 179	2.2e-17	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	422, 676
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	4 cut(s)	212, 769, 776, 783
AfaI	GTAC	2 cut(s)	242, 843
AfiI	CCNNNNNNNGG	2 cut(s)	145, 331
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	160, 273
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	4 cut(s)	260, 285, 445, 484
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	7 cut(s)	276, 316, 346, 403, 453, 507, 514
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	4 cut(s)	212, 769, 776, 783
AspLEI	GCGC	4 cut(s)	251, 375, 424, 676
AspS9I	GGNCC	2 cut(s)	334, 347
AsuC2I	CCSGG	3 cut(s)	146, 173, 494
AsuHPI	GGTGA	3 cut(s)	76, 406, 724
AsuII	TTCGAA	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	3 cut(s)	37, 236, 518
BceAI	ACGGC	3 cut(s)	259, 355, 418
BciT130I	CCWGG	2 cut(s)	162, 275
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	3 cut(s)	146, 173, 494
BcoDI	GTCTC	4 cut(s)	260, 285, 445, 484
BfoI	RGCGCY	2 cut(s)	252, 376
BglI	GCCNNNNNGGC	1 cut(s)	522
BisI	GCNGC	5 cut(s)	247, 252, 343, 346, 523
BlsI	GCNGC	5 cut(s)	248, 253, 344, 347, 524
BmcAI	AGTACT	1 cut(s)	843
Bme1390I	CCNGG	5 cut(s)	146, 162, 173, 275, 494
Bme18I	GGWCC	1 cut(s)	334
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	334, 347
BmiI	GGNNCC	2 cut(s)	349, 526
BmrFI	CCNGG	5 cut(s)	146, 162, 173, 275, 494
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	2 cut(s)	144, 257
Bpu14I	TTCGAA	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	3 cut(s)	146, 173, 494
BsaI	GGTCTC	3 cut(s)	260, 285, 484
BsaJI	CCNNGG	5 cut(s)	217, 337, 429, 444, 529
BsaXI	ACNNNNNCTCC	6 cut(s)	170, 200, 663, 693, 825, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 331
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	162, 275
BseDI	CCNNGG	5 cut(s)	217, 337, 429, 444, 529
BseGI	GGATG	2 cut(s)	59, 204
BseLI	CCNNNNNNNGG	2 cut(s)	145, 331
BseMII	CTCAG	1 cut(s)	728
BseRI	GAGGAG	7 cut(s)	293, 710, 715, 718, 849, 852, 893
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	422, 676
BshFI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	146, 172, 456, 493
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	145, 331
BsmAI	GTCTC	4 cut(s)	260, 285, 445, 484
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
Bso31I	GGTCTC	3 cut(s)	260, 285, 484
BsoBI	CYCGRG	1 cut(s)	350
Bsp119I	TTCGAA	1 cut(s)	773
Bsp143I	GATC	4 cut(s)	36, 354, 435, 486
Bsp19I	CCATGG	2 cut(s)	429, 444
BspANI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BspCNI	CTCAG	1 cut(s)	729
BspFNI	CGCG	2 cut(s)	422, 676
BspLI	GGNNCC	2 cut(s)	349, 526
BspT104I	TTCGAA	1 cut(s)	773
BspTNI	GGTCTC	3 cut(s)	260, 285, 484
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	5 cut(s)	217, 337, 429, 444, 529
BssMI	GATC	4 cut(s)	36, 354, 435, 486
BssT1I	CCWWGG	2 cut(s)	429, 444
Bst2UI	CCWGG	2 cut(s)	162, 275
Bst4CI	ACNGT	2 cut(s)	283, 574
Bst6I	CTCTTC	2 cut(s)	687, 866
BstBI	TTCGAA	1 cut(s)	773
BstC8I	GCNNGC	3 cut(s)	310, 457, 556
BstDEI	CTNAG	1 cut(s)	737
BstDSI	CCRYGG	4 cut(s)	337, 429, 444, 529
BstF5I	GGATG	2 cut(s)	59, 204
BstFNI	CGCG	2 cut(s)	422, 676
BstH2I	RGCGCY	2 cut(s)	252, 376
BstHHI	GCGC	4 cut(s)	251, 375, 424, 676
BstKTI	GATC	4 cut(s)	39, 357, 438, 489
BstMAI	GTCTC	4 cut(s)	260, 285, 445, 484
BstMBI	GATC	4 cut(s)	36, 354, 435, 486
BstMWI	GCNNNNNNNGC	6 cut(s)	522, 560, 619, 671, 680, 897
BstNI	CCWGG	2 cut(s)	162, 275
BstSCI	CCNGG	5 cut(s)	144, 160, 171, 273, 492
BstUI	CGCG	2 cut(s)	422, 676
BstV1I	GCAGC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
BtgI	CCRYGG	4 cut(s)	337, 429, 444, 529
BtsCI	GGATG	2 cut(s)	59, 204
Cac8I	GCNNGC	3 cut(s)	310, 457, 556
CfoI	GCGC	4 cut(s)	251, 375, 424, 676
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	334, 347
CseI	GACGC	2 cut(s)	301, 428
Csp6I	GTAC	2 cut(s)	241, 842
CviAII	CATG	3 cut(s)	430, 445, 646
CviQI	GTAC	2 cut(s)	241, 842
DdeI	CTNAG	1 cut(s)	737
DpnI	GATC	4 cut(s)	38, 356, 437, 488
DpnII	GATC	4 cut(s)	36, 354, 435, 486
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	687, 866
EarI	CTCTTC	2 cut(s)	687, 866
EciI	GGCGGA	3 cut(s)	311, 899, 906
Eco130I	CCWWGG	2 cut(s)	429, 444
Eco31I	GGTCTC	3 cut(s)	260, 285, 484
Eco47I	GGWCC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	769, 783
EcoRII	CCWGG	2 cut(s)	160, 273
EcoT14I	CCWWGG	2 cut(s)	429, 444
ErhI	CCWWGG	2 cut(s)	429, 444
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	3 cut(s)	433, 448, 649
FaiI	YATR	7 cut(s)	153, 257, 431, 446, 549, 647, 858
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	3 cut(s)	429, 444, 645
FauI	CCCGC	2 cut(s)	547, 669
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	5 cut(s)	247, 252, 343, 346, 523
FokI	GGATG	2 cut(s)	46, 191
Fsp4HI	GCNGC	5 cut(s)	247, 252, 343, 346, 523
GlaI	GCGC	4 cut(s)	250, 374, 423, 675
GluI	GCNGC	5 cut(s)	247, 252, 343, 346, 523
GsuI	CTGGAG	2 cut(s)	144, 257
HaeII	RGCGCY	2 cut(s)	252, 376
HaeIII	GGCC	7 cut(s)	278, 318, 348, 405, 455, 509, 516
HapII	CCGG	4 cut(s)	146, 172, 456, 493
HgaI	GACGC	2 cut(s)	301, 428
HhaI	GCGC	4 cut(s)	251, 375, 424, 676
Hin1II	CATG	3 cut(s)	433, 448, 649
Hin6I	GCGC	4 cut(s)	249, 373, 422, 674
HinP1I	GCGC	4 cut(s)	249, 373, 422, 674
HincII	GTYRAC	3 cut(s)	178, 391, 466
HindII	GTYRAC	3 cut(s)	178, 391, 466
HinfI	GANTC	5 cut(s)	191, 501, 744, 763, 797
HpaII	CCGG	4 cut(s)	146, 172, 456, 493
HphI	GGTGA	3 cut(s)	76, 406, 724
Hpy166II	GTNNAC	6 cut(s)	107, 178, 337, 391, 466, 715
Hpy188I	TCNGA	8 cut(s)	36, 190, 218, 290, 538, 768, 782, 789
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	6 cut(s)	107, 178, 337, 391, 466, 715
Hpy99I	CGWCG	4 cut(s)	287, 317, 404, 422
HpyAV	CCTTC	5 cut(s)	60, 97, 211, 491, 652
HpyCH4III	ACNGT	2 cut(s)	283, 574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	522, 560, 619, 671, 680, 897
HpyF3I	CTNAG	1 cut(s)	737
Hsp92II	CATG	3 cut(s)	433, 448, 649
HspAI	GCGC	4 cut(s)	249, 373, 422, 674
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	4 cut(s)	36, 354, 435, 486
LmnI	GCTCC	3 cut(s)	174, 530, 671
Lsp1109I	GCAGC	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	4 cut(s)	38, 356, 437, 488
MboI	GATC	4 cut(s)	36, 354, 435, 486
MboII	GAAGA	7 cut(s)	82, 551, 698, 701, 704, 753, 883
MluCI	AATT	6 cut(s)	212, 629, 719, 769, 776, 783
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	4 cut(s)	146, 172, 456, 493
MspR9I	CCNGG	5 cut(s)	146, 162, 173, 275, 494
MvaI	CCWGG	2 cut(s)	162, 275
MvnI	CGCG	2 cut(s)	422, 676
MwoI	GCNNNNNNNGC	6 cut(s)	522, 560, 619, 671, 680, 897
NaeI	GCCGGC	1 cut(s)	457
NciI	CCSGG	3 cut(s)	146, 173, 494
NcoI	CCATGG	2 cut(s)	429, 444
NdeII	GATC	4 cut(s)	36, 354, 435, 486
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	3 cut(s)	433, 448, 649
NlaIV	GGNNCC	2 cut(s)	349, 526
NmuCI	GTSAC	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	773
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	4 cut(s)	191, 744, 763, 797
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	248, 253, 344, 347, 524
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	160, 273
PspGI	CCWGG	2 cut(s)	160, 273
PspN4I	GGNNCC	2 cut(s)	349, 526
PspPI	GGNCC	2 cut(s)	334, 347
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	2 cut(s)	242, 843
RsaNI	GTAC	2 cut(s)	241, 842
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	5 cut(s)	247, 252, 343, 346, 523
Sau3AI	GATC	4 cut(s)	36, 354, 435, 486
Sau96I	GGNCC	2 cut(s)	334, 347
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	5 cut(s)	146, 162, 173, 275, 494
SetI	ASST	9 cut(s)	72, 89, 166, 171, 297, 363, 390, 714, 898
SfuI	TTCGAA	1 cut(s)	773
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	6 cut(s)	212, 629, 719, 769, 776, 783
StyD4I	CCNGG	5 cut(s)	144, 160, 171, 273, 492
StyI	CCWWGG	2 cut(s)	429, 444
TaaI	ACNGT	2 cut(s)	283, 574
TaqI	TCGA	3 cut(s)	177, 384, 773
TasI	AATT	6 cut(s)	212, 629, 719, 769, 776, 783
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	4 cut(s)	249, 345, 348, 525
TfiI	GAWTC	4 cut(s)	191, 744, 763, 797
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	4 cut(s)	212, 769, 776, 783
XmiI	GTMKAC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.