Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008090.1

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Forward (+)

97 .. 771

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgttggcttctaaaacccacccttgtccatctctgatctcattccctccttccccaacaccccgcaacctccccaacagcctcaccttcttccgccccaaatgtccaccgcactcgcactcgcactcactctcaatcaaagcccaacacccggctcataccactccaggtcagctccgggtcgacattctctccgaatccctacccttcatccataaattccgaggcaaaacgatcgtcgtcaagtacggcggcgccgccatgaaggacgagaccctccaggccaccgtcgtcagagacctcgtcctcctcgcctgcattggcctccgccccatcttggtctacggcggcggccctgagatcaacctctggctcaagcgcctcaacattgaggtcaacttccatgacggcctccgtgtcaccaacgcgcccaccatggagatcgtctccatggtcttggtcgtcaaagtcaacaagcatttggtctccttgatcaaccgagaaggagtcaaggccatcggcctctgcggctccgacggcgagctcatcaccgcccgcccctcccccaacgctgccaagttagggtttttcggcgaggtggctcacgtggaccctgcaattctctggtcgatcatggacgacggccacattccggtgattgcgtcggagtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

224

Amino Acids

24.4

Weight (kDa)

9.14

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	183, 342
AccII	CGCG	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	218
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	4 cut(s)	151, 337, 582, 652
AjnI	CCWGG	2 cut(s)	166, 279
AluBI	AGCT	2 cut(s)	175, 544
AluI	AGCT	2 cut(s)	175, 544
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	4 cut(s)	266, 291, 451, 490
AoxI	GGCC	7 cut(s)	282, 322, 352, 409, 513, 520, 643
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	3 cut(s)	257, 381, 430
AspS9I	GGNCC	2 cut(s)	353, 610
AsuC2I	CCSGG	2 cut(s)	152, 179
AsuHPI	GGTGA	4 cut(s)	76, 412, 541, 667
AvaII	GGWCC	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	3 cut(s)	37, 341, 524
BceAI	ACGGC	5 cut(s)	265, 361, 424, 553, 658
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciT130I	CCWGG	2 cut(s)	168, 281
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	2 cut(s)	152, 179
BcoDI	GTCTC	4 cut(s)	266, 291, 451, 490
BfoI	RGCGCY	2 cut(s)	258, 382
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	6 cut(s)	253, 258, 349, 352, 529, 573
BlsI	GCNGC	6 cut(s)	254, 259, 350, 353, 530, 574
Bme1390I	CCNGG	4 cut(s)	152, 168, 179, 281
Bme18I	GGWCC	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	353, 610
BmiI	GGNNCC	3 cut(s)	256, 532, 612
BmrFI	CCNGG	4 cut(s)	152, 168, 179, 281
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
BpmI	CTGGAG	2 cut(s)	150, 263
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	152, 179
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	3 cut(s)	266, 291, 490
BsaJI	CCNNGG	3 cut(s)	223, 435, 450
BsaWI	WCCGGW	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 337, 582, 652
BseBI	CCWGG	2 cut(s)	168, 281
BseDI	CCNNGG	3 cut(s)	223, 435, 450
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	4 cut(s)	151, 337, 582, 652
BseMII	CTCAG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	559
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	7 cut(s)	284, 324, 354, 411, 515, 522, 645
BshNI	GGYRCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	3 cut(s)	152, 178, 653
BslI	CCNNNNNNNGG	4 cut(s)	151, 337, 582, 652
BsmAI	GTCTC	4 cut(s)	266, 291, 451, 490
BsmBI	CGTCTC	1 cut(s)	451
BsnI	GGCC	7 cut(s)	284, 324, 354, 411, 515, 522, 645
Bso31I	GGTCTC	3 cut(s)	266, 291, 490
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
Bsp19I	CCATGG	2 cut(s)	435, 450
BspANI	GGCC	7 cut(s)	284, 324, 354, 411, 515, 522, 645
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	256, 532, 612
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	3 cut(s)	266, 291, 490
BssECI	CCNNGG	3 cut(s)	223, 435, 450
BssMI	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	435, 450
Bst2UI	CCWGG	2 cut(s)	168, 281
Bst4CI	ACNGT	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	255
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	316, 542, 556
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	2 cut(s)	435, 450
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	2 cut(s)	258, 382
BstHHI	GCGC	3 cut(s)	257, 381, 430
BstKTI	GATC	6 cut(s)	39, 237, 363, 444, 495, 633
BstMAI	GTCTC	4 cut(s)	266, 291, 451, 490
BstMBI	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	528, 537
BstNI	CCWGG	2 cut(s)	168, 281
BstSCI	CCNGG	4 cut(s)	150, 166, 177, 279
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	457
BsuRI	GGCC	7 cut(s)	284, 324, 354, 411, 515, 522, 645
BtgI	CCRYGG	2 cut(s)	435, 450
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	3 cut(s)	316, 542, 556
CfoI	GCGC	3 cut(s)	257, 381, 430
Cfr13I	GGNCC	2 cut(s)	353, 610
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	5 cut(s)	262, 404, 436, 451, 634
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	357
DinI	GGCGCC	1 cut(s)	256
DpnI	GATC	6 cut(s)	38, 236, 362, 443, 494, 632
DpnII	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
EaeI	YGGCCR	1 cut(s)	643
EciI	GGCGGA	2 cut(s)	83, 317
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	435, 450
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	3 cut(s)	266, 291, 490
Eco47I	GGWCC	1 cut(s)	610
Eco53kI	GAGCTC	1 cut(s)	544
Eco72I	CACGTG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	166, 279
EcoT14I	CCWWGG	2 cut(s)	435, 450
EcoT38I	GRGCYC	1 cut(s)	546
EgeI	GGCGCC	1 cut(s)	256
EheI	GGCGCC	1 cut(s)	256
ErhI	CCWWGG	2 cut(s)	435, 450
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	5 cut(s)	265, 407, 439, 454, 637
FaiI	YATR	7 cut(s)	159, 216, 263, 405, 437, 452, 635
FatI	CATG	5 cut(s)	261, 403, 435, 450, 633
FauI	CCCGC	2 cut(s)	71, 563
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	2 cut(s)	183, 342
Fnu4HI	GCNGC	6 cut(s)	253, 258, 349, 352, 529, 573
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	6 cut(s)	253, 258, 349, 352, 529, 573
GlaI	GCGC	3 cut(s)	256, 380, 429
GluI	GCNGC	6 cut(s)	253, 258, 349, 352, 529, 573
GsuI	CTGGAG	2 cut(s)	150, 263
HaeII	RGCGCY	2 cut(s)	258, 382
HaeIII	GGCC	7 cut(s)	284, 324, 354, 411, 515, 522, 645
HapII	CCGG	3 cut(s)	152, 178, 653
HgaI	GACGC	1 cut(s)	651
HhaI	GCGC	3 cut(s)	257, 381, 430
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	5 cut(s)	265, 407, 439, 454, 637
Hin6I	GCGC	3 cut(s)	255, 379, 428
HinP1I	GCGC	3 cut(s)	255, 379, 428
HincII	GTYRAC	3 cut(s)	184, 397, 472
HindII	GTYRAC	3 cut(s)	184, 397, 472
HinfI	GANTC	2 cut(s)	197, 507
HpaII	CCGG	3 cut(s)	152, 178, 653
HphI	GGTGA	4 cut(s)	76, 412, 541, 667
Hpy166II	GTNNAC	6 cut(s)	107, 184, 343, 397, 472, 610
Hpy188I	TCNGA	6 cut(s)	36, 196, 224, 296, 535, 667
Hpy8I	GTNNAC	6 cut(s)	107, 184, 343, 397, 472, 610
Hpy99I	CGWCG	5 cut(s)	242, 293, 539, 644, 667
HpyAV	CCTTC	5 cut(s)	60, 97, 217, 259, 497
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	2 cut(s)	318, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	528, 537
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	606
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	265, 407, 439, 454, 637
HspAI	GCGC	3 cut(s)	255, 379, 428
KasI	GGCGCC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
LmnI	GCTCC	2 cut(s)	180, 536
Lsp1109I	GCAGC	1 cut(s)	559
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	6 cut(s)	38, 236, 362, 443, 494, 632
MboI	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
MboII	GAAGA	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	2 cut(s)	218, 618
Mly113I	GGCGCC	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	516
MmeI	TCCRAC	2 cut(s)	558, 645
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	3 cut(s)	152, 178, 653
MspR9I	CCNGG	4 cut(s)	152, 168, 179, 281
MvaI	CCWGG	2 cut(s)	168, 281
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	528, 537
NarI	GGCGCC	1 cut(s)	255
NciI	CCSGG	2 cut(s)	152, 179
NcoI	CCATGG	2 cut(s)	435, 450
NdeII	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
NlaIII	CATG	5 cut(s)	265, 407, 439, 454, 637
NlaIV	GGNNCC	3 cut(s)	256, 532, 612
NmuCI	GTSAC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	6 cut(s)	254, 259, 350, 353, 530, 574
Ple19I	CGATCG	1 cut(s)	237
PleI	GAGTC	1 cut(s)	515
PluTI	GGCGCC	1 cut(s)	258
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	515
Ppu21I	YACGTR	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	546
Psp6I	CCWGG	2 cut(s)	166, 279
PspCI	CACGTG	1 cut(s)	607
PspGI	CCWGG	2 cut(s)	166, 279
PspN4I	GGNNCC	3 cut(s)	256, 532, 612
PspPI	GGNCC	2 cut(s)	353, 610
PsyI	GACNNNGTC	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	653
SacI	GAGCTC	1 cut(s)	546
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	6 cut(s)	253, 258, 349, 352, 529, 573
Sau3AI	GATC	6 cut(s)	36, 234, 360, 441, 492, 630
Sau96I	GGNCC	2 cut(s)	353, 610
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	4 cut(s)	152, 168, 179, 281
SduI	GDGCHC	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	218, 618
SspDI	GGCGCC	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	150, 166, 177, 279
StyI	CCWWGG	2 cut(s)	435, 450
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	2 cut(s)	183, 629
TasI	AATT	2 cut(s)	218, 618
TauI	GCSGC	5 cut(s)	255, 260, 351, 354, 531
TfiI	GAWTC	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	199, 278
TspGWI	ACGGA	1 cut(s)	404
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	610
XapI	RAATTY	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	183, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.