Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

63243268 .. 63245850

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010124

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGGACGAGACCCTCCAGGCCACCATCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCCGCCCCATCTTGGTCCACGGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATCGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCCACTATGGAGATCGTCTCCATGGTCTTGGCCGGCAAAGTCAATAAGCATTTGGTCTCCCTGATCAACCGGGAAGGAGTCAAGGCCATCGGCCTCTGCAGCTCCGAAGGCGAGCTCATCACAGAGGCTGTTGAGGTTGAAGGTGGCTTGGAAGTTTTCAGGGTCAGAAGAAGTGTAGAAGGCGGGCTTGGCGGTGGGGACGATGGTGGTGGTGGTGGTGGTGCTGTTGGAGTTTCGTCTGCGGTTTCGGCGATTTCAATTTGGAGGGCGAGGCATGGAGCAGGAGAAGGAGGCTTTGGGAGCGCGGTACAAATTATTCATAATAACCAATTCGGGAAATCAAAGACTCTAGTTCAAGTTCAACCTGGAAATAAAGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

184

Amino Acids

19.05

Weight (kDa)

6.52

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	8 - 99	6e-13	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	167, 473
AciI	CCGC	7 cut(s)	67, 87, 90, 351, 360, 410, 473
AcoI	YGGCCR	1 cut(s)	198
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	308, 426, 524, 530
AjnI	CCWGG	2 cut(s)	18, 532
AjuI	GAANNNNNNNTTGG	4 cut(s)	339, 371, 447, 479
AluBI	AGCT	3 cut(s)	270, 283, 545
AluI	AGCT	3 cut(s)	270, 283, 545
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	4 cut(s)	5, 30, 190, 229
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	7 cut(s)	21, 61, 91, 148, 198, 252, 259
ApeKI	GCWGC	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	120, 169, 473
AspS9I	GGNCC	2 cut(s)	79, 92
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	4 cut(s)	35, 80, 263, 365
BceAI	ACGGC	2 cut(s)	100, 163
BciT130I	CCWGG	2 cut(s)	20, 534
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	4 cut(s)	5, 30, 190, 229
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	3 cut(s)	88, 91, 268
BlsI	GCNGC	3 cut(s)	89, 92, 269
Bme1390I	CCNGG	3 cut(s)	20, 239, 534
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	79, 92
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	3 cut(s)	20, 239, 534
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	239
BsaI	GGTCTC	3 cut(s)	5, 30, 229
BsaJI	CCNNGG	2 cut(s)	82, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	2 cut(s)	20, 534
BseDI	CCNNGG	2 cut(s)	82, 189
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	2 cut(s)	167, 473
BshFI	GGCC	7 cut(s)	23, 63, 93, 150, 200, 254, 261
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	201, 238
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	4 cut(s)	5, 30, 190, 229
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	7 cut(s)	23, 63, 93, 150, 200, 254, 261
Bso31I	GGTCTC	3 cut(s)	5, 30, 229
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	99, 180, 231
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	7 cut(s)	67, 87, 90, 351, 360, 410, 473
BspANI	GGCC	7 cut(s)	23, 63, 93, 150, 200, 254, 261
BspFNI	CGCG	2 cut(s)	167, 473
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	269
BspTNI	GGTCTC	3 cut(s)	5, 30, 229
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	82, 189
BssMI	GATC	3 cut(s)	99, 180, 231
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	20, 534
BstC8I	GCNNGC	4 cut(s)	55, 202, 281, 353
BstDSI	CCRYGG	2 cut(s)	82, 189
BstFNI	CGCG	2 cut(s)	167, 473
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	3 cut(s)	120, 169, 473
BstKTI	GATC	3 cut(s)	102, 183, 234
BstMAI	GTCTC	4 cut(s)	5, 30, 190, 229
BstMBI	GATC	3 cut(s)	99, 180, 231
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 276, 357, 416, 468
BstNI	CCWGG	2 cut(s)	20, 534
BstSCI	CCNGG	3 cut(s)	18, 237, 532
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	2 cut(s)	167, 473
BstV1I	GCAGC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	7 cut(s)	23, 63, 93, 150, 200, 254, 261
BtgI	CCRYGG	2 cut(s)	82, 189
Cac8I	GCNNGC	4 cut(s)	55, 202, 281, 353
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	3 cut(s)	120, 169, 473
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	79, 92
CseI	GACGC	2 cut(s)	46, 173
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	2 cut(s)	190, 443
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	3 cut(s)	101, 182, 233
DpnII	GATC	3 cut(s)	99, 180, 231
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	3 cut(s)	5, 30, 229
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	18, 532
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	2 cut(s)	193, 446
FaiI	YATR	4 cut(s)	176, 191, 444, 489
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	189, 442
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	88, 91, 268
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	88, 91, 268
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	3 cut(s)	119, 168, 472
GluI	GCNGC	3 cut(s)	88, 91, 268
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	7 cut(s)	23, 63, 93, 150, 200, 254, 261
HapII	CCGG	2 cut(s)	201, 238
HgaI	GACGC	2 cut(s)	46, 173
HhaI	GCGC	3 cut(s)	120, 169, 473
Hin1II	CATG	2 cut(s)	193, 446
Hin6I	GCGC	3 cut(s)	118, 167, 471
HinP1I	GCGC	3 cut(s)	118, 167, 471
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	246, 514
HpaII	CCGG	2 cut(s)	201, 238
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	82, 136
Hpy188I	TCNGA	3 cut(s)	35, 274, 335
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	2 cut(s)	82, 136
Hpy99I	CGWCG	3 cut(s)	62, 149, 167
HpyAV	CCTTC	5 cut(s)	236, 269, 302, 341, 449
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 276, 357, 416, 468
Hsp92II	CATG	2 cut(s)	193, 446
HspAI	GCGC	3 cut(s)	118, 167, 471
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	99, 180, 231
LmnI	GCTCC	3 cut(s)	275, 446, 468
Lsp1109I	GCAGC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	101, 182, 233
MboI	GATC	3 cut(s)	99, 180, 231
MboII	GAAGA	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	426, 480, 497
MlyI	GAGTC	2 cut(s)	255, 508
MmeI	TCCRAC	1 cut(s)	376
MroNI	GCCGGC	1 cut(s)	200
MspI	CCGG	2 cut(s)	201, 238
MspR9I	CCNGG	3 cut(s)	20, 239, 534
MvaI	CCWGG	2 cut(s)	20, 534
MvnI	CGCG	2 cut(s)	167, 473
MwoI	GCNNNNNNNGC	5 cut(s)	267, 276, 357, 416, 468
NaeI	GCCGGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	99, 180, 231
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	193, 446
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	89, 92, 269
PleI	GAGTC	2 cut(s)	254, 508
PpsI	GAGTC	2 cut(s)	254, 508
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	18, 532
PspGI	CCWGG	2 cut(s)	18, 532
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	79, 92
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	3 cut(s)	88, 91, 268
Sau3AI	GATC	3 cut(s)	99, 180, 231
Sau96I	GGNCC	2 cut(s)	79, 92
SchI	GAGTC	2 cut(s)	255, 508
ScrFI	CCNGG	3 cut(s)	20, 239, 534
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	9 cut(s)	42, 108, 135, 272, 285, 306, 313, 535, 547
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	426, 480, 497
SsiI	CCGC	7 cut(s)	67, 87, 90, 351, 360, 410, 473
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	18, 237, 532
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	426, 480, 497
TauI	GCSGC	2 cut(s)	90, 93
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 476
TspGWI	ACGGA	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	79
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.