Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

55036837 .. 55037250

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGGACGAGACCCTCCAGGCCACCGTCGTCAGAGACCTCGTCCTCCTCGCCTGCGTCGGCCTCCGCCCCATCTTGGTCCACAGCGGCGGCCCCGAGATCAACCTCTGGCTCAAGCGCCTCAACATTGAGGTCAACTTCCACGACGGCCTCCGTGTCACCGACGCGCCAACCACGGAGATCGTCTCCACGGTCTTGGCCGGCAAAGTCAACAAGCATTTGGTCTCCTTGATCAACCGAGAAGGAGTCAAGGCCATCAGCCTCTGCGGCTCCGACGGCGAGCTCATCACCGCCCGCCCCGCCCCCAACGCTGCCAAGTTAGGGTTTGTCGGCGAGGTGGCACGCGTGGACCCCGCAATTCTCTGGTCGATGGTGGACGACTACCACATTTCGGTGATTGCGTCGGAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

137

Amino Acids

14.83

Weight (kDa)

5.75

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	8 - 134	6.1e-14	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	167, 345
AciI	CCGC	8 cut(s)	67, 87, 90, 267, 291, 295, 300, 354
AcoI	YGGCCR	1 cut(s)	198
AfiI	CCNNNNNNNGG	3 cut(s)	76, 321, 391
AflIII	ACRYGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	4 cut(s)	5, 30, 190, 229
AlwNI	CAGNNNCTG	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	6 cut(s)	21, 61, 91, 148, 198, 252
ApeKI	GCWGC	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	120, 169
AspS9I	GGNCC	3 cut(s)	79, 92, 349
AsuHPI	GGTGA	3 cut(s)	151, 280, 406
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	79, 349
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	80, 263, 364
BceAI	ACGGC	2 cut(s)	163, 292
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	4 cut(s)	5, 30, 190, 229
BfoI	RGCGCY	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	88, 91, 268, 312
BlsI	GCNGC	4 cut(s)	89, 92, 269, 313
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	2 cut(s)	79, 349
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	3 cut(s)	79, 92, 349
BmiI	GGNNCC	3 cut(s)	94, 271, 351
BmrFI	CCNGG	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpuEI	CTTGAG	1 cut(s)	98
BsaI	GGTCTC	3 cut(s)	5, 30, 229
BsaJI	CCNNGG	2 cut(s)	174, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 321, 391
Bse118I	RCCGGY	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	174, 189
BseLI	CCNNNNNNNGG	3 cut(s)	76, 321, 391
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	2 cut(s)	167, 345
BshFI	GGCC	6 cut(s)	23, 63, 93, 150, 200, 254
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	76, 321, 391
BsmAI	GTCTC	4 cut(s)	5, 30, 190, 229
BsmBI	CGTCTC	1 cut(s)	190
BsnI	GGCC	6 cut(s)	23, 63, 93, 150, 200, 254
Bso31I	GGTCTC	3 cut(s)	5, 30, 229
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	99, 180, 231
BspACI	CCGC	8 cut(s)	67, 87, 90, 267, 291, 295, 300, 354
BspANI	GGCC	6 cut(s)	23, 63, 93, 150, 200, 254
BspFNI	CGCG	2 cut(s)	167, 345
BspLI	GGNNCC	3 cut(s)	94, 271, 351
BspTNI	GGTCTC	3 cut(s)	5, 30, 229
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	174, 189
BssMI	GATC	3 cut(s)	99, 180, 231
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	28, 193
BstC8I	GCNNGC	5 cut(s)	55, 202, 281, 295, 343
BstDSI	CCRYGG	2 cut(s)	174, 189
BstFNI	CGCG	2 cut(s)	167, 345
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 169
BstKTI	GATC	3 cut(s)	102, 183, 234
BstMAI	GTCTC	4 cut(s)	5, 30, 190, 229
BstMBI	GATC	3 cut(s)	99, 180, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	267, 276, 299, 308
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	2 cut(s)	167, 345
BstV1I	GCAGC	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	196
BsuRI	GGCC	6 cut(s)	23, 63, 93, 150, 200, 254
BtgI	CCRYGG	2 cut(s)	174, 189
Cac8I	GCNNGC	5 cut(s)	55, 202, 281, 295, 343
CaiI	CAGNNNCTG	1 cut(s)	264
CfoI	GCGC	2 cut(s)	120, 169
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	79, 92, 349
CseI	GACGC	3 cut(s)	46, 173, 390
DpnI	GATC	3 cut(s)	101, 182, 233
DpnII	GATC	3 cut(s)	99, 180, 231
EaeI	YGGCCR	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco31I	GGTCTC	3 cut(s)	5, 30, 229
Eco47I	GGWCC	2 cut(s)	79, 349
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	190
FauI	CCCGC	3 cut(s)	302, 307, 361
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	88, 91, 268, 312
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	88, 91, 268, 312
GlaI	GCGC	2 cut(s)	119, 168
GluI	GCNGC	4 cut(s)	88, 91, 268, 312
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	6 cut(s)	23, 63, 93, 150, 200, 254
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	3 cut(s)	46, 173, 390
HhaI	GCGC	2 cut(s)	120, 169
Hin6I	GCGC	2 cut(s)	118, 167
HinP1I	GCGC	2 cut(s)	118, 167
HincII	GTYRAC	2 cut(s)	136, 211
HindII	GTYRAC	2 cut(s)	136, 211
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	3 cut(s)	151, 280, 406
Hpy166II	GTNNAC	5 cut(s)	82, 136, 211, 349, 376
Hpy188I	TCNGA	3 cut(s)	35, 274, 406
Hpy8I	GTNNAC	5 cut(s)	82, 136, 211, 349, 376
Hpy99I	CGWCG	6 cut(s)	32, 62, 149, 167, 278, 406
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	28, 193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	267, 276, 299, 308
HspAI	GCGC	2 cut(s)	118, 167
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	99, 180, 231
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	6 cut(s)	5, 32, 67, 94, 214, 349
Lsp1109I	GCAGC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	3 cut(s)	101, 182, 233
MboI	GATC	3 cut(s)	99, 180, 231
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	1 cut(s)	357
MluI	ACGCGT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	2 cut(s)	297, 384
MroNI	GCCGGC	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	167, 345
MwoI	GCNNNNNNNGC	4 cut(s)	267, 276, 299, 308
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	3 cut(s)	99, 180, 231
NgoMIV	GCCGGC	1 cut(s)	200
NlaIV	GGNNCC	3 cut(s)	94, 271, 351
NmuCI	GTSAC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PdiI	GCCGGC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	89, 92, 269, 313
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	3 cut(s)	94, 271, 351
PspPI	GGNCC	3 cut(s)	79, 92, 349
PstNI	CAGNNNCTG	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	285
SatI	GCNGC	4 cut(s)	88, 91, 268, 312
Sau3AI	GATC	3 cut(s)	99, 180, 231
Sau96I	GGNCC	3 cut(s)	79, 92, 349
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	42, 108, 135, 285, 339
SinI	GGWCC	2 cut(s)	79, 349
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	8 cut(s)	67, 87, 90, 267, 291, 295, 300, 354
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	28, 193
TaqI	TCGA	1 cut(s)	368
TasI	AATT	1 cut(s)	357
TauI	GCSGC	3 cut(s)	90, 93, 270
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	143, 191
Tth111I	GACNNNGTC	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	79, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.