Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001735

Physical Location & Seq

Genomic Coordinates Reverse (-)

27611733 .. 27612080

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTAACAACTTTTCTGGAGAACTGTACACAACTAGTAGTTGTTGACCTTGGAGCAAATATATTATCCGGAAAAATCCCACCATGGATAGGCCAAAGCCTAACAAGTTTGTTTGTTCTACGCCTACGGTCTAATGAGTTCAACGGAATCATACCCTCATCCCTGTGCAGTTTAAGCTCCATTCATGTTTTGGACCTCTCTCAGAACAATTTATCCGGAGCCTTGCCGCATTGCTTCAGTAACATAACAGCTTCATCTGATGACACAAGTGTTTTTGGATTTGTAGAAATAGTGTGGAAAGGAGTAAAGACTGAGTTTGGGGGAAATCTTGCACATTTGAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003991 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006591 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016597 GO:0016740 GO:0016772 GO:0016774 GO:0019752 GO:0031406 GO:0031976 GO:0031984 GO:0034618 GO:0036094 GO:0042450 GO:0043167 GO:0043168 GO:0043169 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

AA_kinase

Protein Analysis

115

Amino Acids

12.39

Weight (kDa)

5.8

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	11 - 71	1.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57560
fragaria_vesca	FvH4_2g30500
malus_domestica	MD08G1134500.v1.1
prunus_persica	Prupe.1G463900_v2.0.a1
pyrus_communis	pycom08g11350
rosa_chinensis	RchiOBHm_Chr3g0471221 RchiOBHm_Chr5g0021691 RchiOBHm_Chr6g0246551 RchiOBHm_Chr6g0292021 RchiOBHm_Chr6g0312541 RchiOBHm_Chr7g0238931
rosa_laevigata	RLG00000007795 RLG00000010124 RLG00000010318 RLG00000012398 RLG00000019113 RLG00000023496 RLG00000025257 RLG00000034574
rosa_multiflora	Rmu_sc0002754.1_g000042 Rmu_sc0003094.1_g000013 Rmu_sc0008090.1_g000001 Rmu_sc0008363.1_g000008
rosa_roxburghii	Rroxscaffold_7G00156700
rosa_rugosa	Rorug04G0331000 Rorug05G0155900 Rorug06G0396400 Rorug07G0284600
rosa_samantha	Rh1AG359700 Rh1BG130800 Rh3AG089900 Rh3BG190800 Rh3CG093300 Rh3CG181100 Rh5CG318300 Rh6BG526000 Rh6CG531100 Rh6DG516100 Rh7AG157800 Rh7AG157900 Rh7AG177800 Rh7AG188000 Rh7AG478800 Rh7BG405100 Rh7CG131900 Rh7DG455900
rosa_wichuraiana	Rw6G044660 Rw7G022170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	68, 215
AciI	CCGC	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	142
AhlI	ACTAGT	1 cut(s)	34
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	177, 251, 345
AluI	AGCT	3 cut(s)	177, 251, 345
Aor13HI	TCCGGA	2 cut(s)	68, 215
AoxI	GGCC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	193
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 346
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	49, 83
BsaWI	WCCGGW	2 cut(s)	68, 215
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	229
BseAI	TCCGGA	2 cut(s)	68, 215
BseDI	CCNNGG	2 cut(s)	49, 83
BseGI	GGATG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	215, 303
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	69, 216
BslI	CCNNNNNNNGG	1 cut(s)	89
BsnI	GGCC	1 cut(s)	93
Bsp13I	TCCGGA	2 cut(s)	68, 215
Bsp1407I	TGTACA	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	2 cut(s)	214, 304
BspEI	TCCGGA	2 cut(s)	68, 215
BspLI	GGNNCC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	49, 83
BssT1I	CCWWGG	2 cut(s)	49, 83
Bst4CI	ACNGT	2 cut(s)	26, 129
BstAUI	TGTACA	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	201, 312
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	84, 185
CviJI	RGCY	6 cut(s)	93, 99, 177, 221, 251, 345
CviKI_1	RGCY	6 cut(s)	93, 99, 177, 221, 251, 345
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	201, 312
Eco130I	CCWWGG	2 cut(s)	49, 83
Eco47I	GGWCC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	220
EcoT14I	CCWWGG	2 cut(s)	49, 83
ErhI	CCWWGG	2 cut(s)	49, 83
FaeI	CATG	2 cut(s)	87, 188
FaiI	YATR	5 cut(s)	62, 85, 152, 186, 245
FatI	CATG	2 cut(s)	83, 184
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	2 cut(s)	35, 346
GluI	GCNGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	69, 216
Hin1II	CATG	2 cut(s)	87, 188
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	2 cut(s)	69, 216
Hpy166II	GTNNAC	2 cut(s)	29, 46
Hpy188I	TCNGA	2 cut(s)	204, 259
Hpy188III	TCNNGA	3 cut(s)	17, 69, 216
Hpy8I	GTNNAC	2 cut(s)	29, 46
HpyCH4III	ACNGT	2 cut(s)	26, 129
HpyCH4V	TGCA	2 cut(s)	168, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	2 cut(s)	201, 312
Hsp92II	CATG	2 cut(s)	87, 188
Kpn2I	TCCGGA	2 cut(s)	68, 215
LmnI	GCTCC	3 cut(s)	53, 182, 218
LpnPI	CCDG	4 cut(s)	2, 82, 176, 229
MaeI	CTAG	2 cut(s)	35, 346
MaeIII	GTNAC	2 cut(s)	4, 239
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	2 cut(s)	166, 206
MroI	TCCGGA	2 cut(s)	68, 215
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	2 cut(s)	69, 216
MwoI	GCNNNNNNNGC	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	83
NlaIII	CATG	2 cut(s)	87, 188
NlaIV	GGNNCC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	227
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	5 cut(s)	51, 179, 198, 253, 347
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	35, 346
StyI	CCWWGG	2 cut(s)	49, 83
TaaI	ACNGT	2 cut(s)	26, 129
TasI	AATT	1 cut(s)	208
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	173, 243
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	35, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.